Abstract
We designed a turn-off near-infrared fluorescent fluoride chemosensor NIR-BODIPY-Si through the density functional theory/time-dependent functional theory calculations. In the designed sensor, the tert-butyldimethylsilyloxy moiety responses to the fluoride-triggered desilylation process, and the BODIPY dye serves as fluorophore. The molecular design firstly showed that the possibility of photoinduced electron transfer is low/high in NIR-BODIPY-Si/NIR-BODIPY-O (the desilylation product), thus referring that the fluorescence sensing mechanism is a photoinduced electron transfer mechanism that quenched the sensor’s fluorescence after detection of fluoride anions. Absorption and emission spectra further demonstrated that the designed sensor is a near-infrared chemosensor. The largest binding energy between NIR-BODIPY-Si and F− suggests that the sensor has an excellent selectivity to F− and the low barrier of the desilylation reaction accounts for the sensor’s rapid response speed to F−. We also provided the synthetic routine for the molecule sensor, with the expectation that this molecular design can shed some light on the experimentally based design procedure.
Graphical abstract
Similar content being viewed by others
Data availability
All data generated or analyzed during this study are included in this published article and its supplementary information files.
References
Camargo JA (2003) Fluoride toxicity to aquatic organisms: a review. Chemosphere 50(3):251–264. https://doi.org/10.1016/S0045-6535(02)00498-8
Li G-Y, Zhao G-J, Liu Y-H, Han K-L, He G-Z (2010) TD-DFT study on the sensing mechanism of a fluorescent chemosensor for fluoride: excited-state proton transfer. J. Comput. Chem. 31:1759–1765. https://doi.org/10.1002/jcc.21466
Calderón-Ortiz LK, Täuscher E, Bastos E, Görls H, Weiß D, Beckert R (2012) Hydroxythiazole-based fluorescent probes for fluoride ion detection. J. Organomet. Chem. 2012:2535–2541. https://doi.org/10.1002/ejoc.201200140
Wu J, Liu W, Ge J, Zhang H, Wang P (2011) New sensing mechanisms for design of fluorescent chemosensors emerging in recent years. Chem. Soc. Rev. 40(7):3483–3495. https://doi.org/10.1039/C0CS00224K
Chen ZJ, Wang LM, Zou G, Zhang L, Zhang GJ, Cai XF, Teng MS (2012) Colorimetric and ratiometric fluorescent chemosensor for fluoride ion based on perylene diimide derivatives. Dyes Pigments 94(3):410–415. https://doi.org/10.1016/j.dyepig.2012.01.024
Han J, Zhang J, Gao M, Hao H, Xu X (2019) Recent advances in chromo-fluorogenic probes for fluoride detection. Dyes Pigments 162:412–439. https://doi.org/10.1016/j.dyepig.2018.10.047
Du M, Huo B, Liu J, Li M, Fang L, Yang Y (2018) A near-infrared fluorescent probe for selective and quantitative detection of fluoride ions based on Si-Rhodamine. Anal. Chim. Acta 1030:172–182. https://doi.org/10.1016/j.aca.2018.05.013
Gunnlaugsson T, Kruger PE, Jensen P, Tierney J, Ali HDP, Hussey GM (2005) Colorimetric “naked eye” sensing of anions in aqueous solution. J. Org. Chem. 70(26):10875–10878. https://doi.org/10.1021/jo0520487
Peng X, Wu Y, Fan J, Tian M, Han K (2005) Colorimetric and ratiometric fluorescence sensing of fluoride: tuning selectivity in proton transfer. J. Org. Chem. 70(25):10524–10531. https://doi.org/10.1021/jo051766q
Mallick A, Roy UK, Haldar B, Pratihar S (2012) A newly developed highly selective ratiometric fluoride ion sensor: spectroscopic, NMR and density functional studies. Analyst 137:1247–1251. https://doi.org/10.1039/c2an16132j
Guha S, Saha S (2010) Fluoride ion sensing by an anion-pi interaction. J. Am. Chem. Soc. 132(50):17674–17677. https://doi.org/10.1021/ja107382x
Guha S, Goodson FS, Corson LJ, Saha S (2012) Boundaries of anion/naphthalenediimide interactions: from anion-pi interactions to anion-induced charge-transfer and electron-transfer phenomena. J. Am. Chem. Soc. 134(33):13679–13691. https://doi.org/10.1021/ja303173n
Zhang JF, Lim CS, Bhuniya S, Cho BR, Kim JS (2011) A highly selective colorimetric and ratiometric two-photon fluorescent probe for fluoride ion detection. Org. Lett. 13(5):1190–1193. https://doi.org/10.1021/ol200072e
Jun Feng Z, Su LC, Sankarprasad B, Bong Rae C, Jong Seung K (2011) A highly selective colorimetric and ratiometric two-photon fluorescent probe for fluoride ion detection. Org. Lett. 13(5):1190–1193
Cao J, Zhao C, Feng P, Zhang Y, Zhu W (2012) A colorimetric and ratiometric NIR fluorescent turn-on fluoride chemodosimeter based on BODIPY derivatives: high selectivity via specific Si–O cleavage. RSC Adv. 2(2):418–420. https://doi.org/10.1039/c1ra00942g
Zhou Y, Zhang JF, Yoon J (2014) Fluorescence and colorimetric chemosensors for fluoride-ion detection. Chem. Rev. 114(10):5511–5571. https://doi.org/10.1021/cr400352m
Suresh R, Thiyagarajan SK, Ramamurthy P (2016) Encumbrance in desilylation triggered fluorogenic detection of the fluoride ion - a kinetic approach. Phys. Chem. Chem. Phys. 18(47):32247–32255. https://doi.org/10.1039/c6cp06557k
Zheng Y, Duan Y, Ji K, Wang R-L, Wang B (2016) Tuning the reaction rates of fluoride probes for detection in aqueous solution. RSC Adv. 6:25242–25245. https://doi.org/10.1039/C6RA03252D
Hilderbrand SA, Weissleder R (2010) Near-infrared fluorescence: application to in vivo molecular imaging. Curr. Opin. Chem. Biol. 14(1):71–79. https://doi.org/10.1016/j.cbpa.2009.09.029
Lou Z, Li P, Han K (2015) Redox-responsive fluorescent probes with different design strategies. Acc. Chem. Res. 48(5):1358–1368
Chu T-s LR, B-t L (2016) Reversibly monitoring oxidation and reduction events in living biological systems: recent development of redox-responsive reversible NIR biosensors and their applications in in vitro/in vivo fluorescence imaging. Biosens. Bioelectron. 86:643–655. https://doi.org/10.1016/j.bios.2016.07.039
Guo Z, Park S, Yoon J, Shin I (2014) Recent progress in the development of near-infrared fluorescent probes for bioimaging applications. Chem. Soc. Rev. 43:16–29. https://doi.org/10.1039/c3cs60271k
Sun W, Guo S, Hu C, Fan J, Peng X (2016) Recent development of chemosensors based on cyanine platforms. Chem. Rev. 116:7768–7817. https://doi.org/10.1021/acs.chemrev.6b00001
Frangioni J (2003) In vivo near-infrared fluorescence imaging. Curr. Opin. Chem. Biol. 7:626–634. https://doi.org/10.1016/j.cbpa.2003.08.007
Shiraogawa T, Candel G, Fukuda R, Ciofini I, Adamo C, Okamoto A, Ehara M (2019) Photophysical properties of fluorescent imaging biological probes of nucleic acids: SAC-CI and TD-DFT study. J. Comput. Chem. 40(1):127–134. https://doi.org/10.1002/jcc.25553
Yu F, Li P, Li G, Zhao G, Chu T, Han K (2011) A near-IR reversible fluorescent probe modulated by selenium for monitoring peroxynitrite and imaging in living cells. J. Am. Chem. Soc. 133(29):11030–11033. https://doi.org/10.1021/ja202582x
Yu F, Li P, Wang B, Han K (2013) Reversible near-infrared fluorescent probe introducing tellurium to mimetic glutathione peroxidase for monitoring the redox cycles between peroxynitrite and glutathione in vivo. J. Am. Chem. Soc. 135(20):7674–7680. https://doi.org/10.1021/ja401360a
Tian X, Tong X, Li Z, Li D, Kong Q, Yang X (2018) In vivo fluoride ion detection and imaging in mice using a designed near-infrared Ratiometric fluorescent probe based on IR-780. J. Agric. Food Chem. 66(43):11486–11491. https://doi.org/10.1021/acs.jafc.8b03736
Kamkaew A, Lim SH, Lee HB, Kiew LV, Chung LY, Burgess K (2013) BODIPY dyes in photodynamic therapy. Chem. Soc. Rev. 42(1):77–88. https://doi.org/10.1039/c2cs35216h
Niu SL, Ulrich G, Ziessel R, Kiss A, Renard P-Y, Romieu A (2009) Water-soluble BODIPY derivatives. Org. Lett. 11:2049–2052. https://doi.org/10.1021/ol900302n
Li SJ, Fu YJ, Li CY, Li YF, Yi LH, Ou-Yang J (2017) A near-infrared fluorescent probe based on BODIPY derivative with high quantum yield for selective detection of exogenous and endogenous cysteine in biological samples. Anal. Chim. Acta 994:73–81. https://doi.org/10.1016/j.aca.2017.09.031
Wang B, Li P, Yu F, Song P, Sun X, Yang S, Lou Z, Han K (2013) A reversible fluorescence probe based on Se-BODIPY for the redox cycle between HClO oxidative stress and H2S repair in living cells. Chem. Commun. (Camb.) 49(10):1014–1016. https://doi.org/10.1039/c2cc37803e
Loudet A, Burgess K (2007) BODIPY dyes and their derivatives: syntheses and spectroscopic properties. Chem. Rev. 107(11):4891–4932. https://doi.org/10.1021/cr078381n
Liu Y, Wang S-Q, Zhao B-X (2015) A novel pyrazoline-based fluorescent probe for detecting fluoride ion in water and its application on real samples. RSC Adv. 5(42):32962–32966. https://doi.org/10.1039/c5ra04933d
Ren J, Wu Z, Zhou Y, Li Y, Xu Z (2011) Colorimetric fluoride sensor based on 1,8-naphthalimide derivatives. Dyes Pigments 91(3):442–445. https://doi.org/10.1016/j.dyepig.2011.04.012
Bao Y, Liu B, Wang H, Tian J, Bai R (2011) A ‘naked eye’ and ratiometric fluorescent chemosensor for rapid detection of F- based on combination of desilylation reaction and excited-state proton transfer. Chem. Commun. 47(13):3957–3959
Li G-Y, Chu T (2011) TD-DFT study on fluoride-sensing mechanism of 2-(2 '-phenylureaphenyl)benzoxazole: the way to inhibit the ESIPT process. Phys. Chem. Chem. Phys. 13(46):20766–20771. https://doi.org/10.1039/c1cp21470e
Song P, Ding J-X, Chu T-S (2012) TD-DFT study on the excited-state proton transfer in the fluoride sensing of a turn-off type fluorescent chemosensor based on anthracene derivatives. Spectrochim Acta Part a-Mol Biomol Spectrosc 97:746–752. https://doi.org/10.1016/j.saa.2012.07.010
Chen J-S, Liu R-Z, Yang Y, Chu T-S (2013) Intramolecular charge transfer and sensing mechanism for a colorimetric fluoride sensor based on 1,8-naphthalimide derivatives. Theor. Chem. Accounts 133(1). https://doi.org/10.1007/s00214-013-1411-3
Chen J-S, Zhou P-W, Li G-Y, Chu T-S, He G-Z (2013) Fluoride anion sensing mechanism of 2-ureido-4 1H -pyrimidinone quadruple hydrogen-bonded supramolecular assembly: photoinduced electron transfer and partial configuration change. J. Phys. Chem. B 117(17):5212–5221. https://doi.org/10.1021/jp4017757
Chen J-S, Zhou P-W, Yang S-Q, Fu A-P, Chu T-S (2013) Sensing mechanism for a fluoride chemosensor: invalidity of excited-state proton transfer mechanism. Phys. Chem. Chem. Phys. 15(38):16183–16189. https://doi.org/10.1039/c3cp51482j
Chen J-S, Zhou P-W, Zhao L, Chu T-S (2014) A DFT/TDDFT study of the excited state intramolecular proton transfer based sensing mechanism for the aqueous fluoride chemosensor BTTPB. RSC Adv. 4(1):254–259. https://doi.org/10.1039/c3ra44900a
Li Y, Chen J, Chu T-S (2018) Fluoride anion sensing mechanism of a BODIPY-linked hydrogen-bonding probe. J. Comput. Chem. 39(21):1639–1647. https://doi.org/10.1002/jcc.25341
Sakr MAS, Gawad SAA, El-Daly SA, Abou Kana MTH, Ebeid EM (2020) Photophysical and TDDFT investigation for (E, E)-2, 5-bis 2-(4-(dimethylamino)phenyl) ethenyl pyrazine (BDPEP) laser dye in restricted matrices. J. Mol. Struct. 1217:9. https://doi.org/10.1016/j.molstruc.2020.128403
Kumar J, Kumar N, Hota PK (2020) Optical properties of 3-substituted indoles. RSC Adv. 10(47):28213–28224. https://doi.org/10.1039/d0ra05405d
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, KitaoO, Nakai H, Vreven T, Montgomery JA, Jr., Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Keith T, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas O, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2010) Gaussian, Inc., Wallingford CT
Cances E, Mennucci B, Tomasi J (1997) A new integral equation formalism for the polarizable continuum model: theoretical background and applications to isotropic and anisotropic dielectrics. J. Chem. Phys. 107(8):3032–3041
d’Antuono P, Botek E, Champagne B, Spassova M, Denkova P (2006) Theoretical investigation on H 1 and C 13 NMR chemical shifts of small alkanes and chloroalkanes. J. Chem. Phys. 125(14):144309
Sokkalingam P, Lee C-H (2011) Highly sensitive fluorescence “turn-on” indicator for fluoride anion with remarkable selectivity in organic and aqueous media. J. Organomet. Chem. 76:3820–3828. https://doi.org/10.1021/jo200138t
Bai T, Chu T (2020) Exploring the simultaneous biothiols-differentiating detecting feature of a BODIPY chemosensor with DFT/TDDFT. J. Mol. Liq. 309. https://doi.org/10.1016/j.molliq.2020.113145
Ooyama Y, Yamaji K, Ohshita J (2017) Photovoltaic performances of type-II dye-sensitized solar cells based on catechol dye sensitizers: retardation of back-electron transfer by PET (photo-induced electron transfer). Mater. Chem. Front. 1(11):2243–2255. https://doi.org/10.1039/c7qm00211d
Escudero D (2016) Revising intramolecular photoinduced electron transfer (PET) from first-principles. Acc. Chem. Res. 49(9):1816–1824. https://doi.org/10.1021/acs.accounts.6b00299
Ueno T, Urano Y, Setsukinai K, Takakusa H, Kojima H, Kikuchi K, Ohkubo K, Fukuzumi S, Nagano T (2004) Rational principles for modulating fluorescence properties of fluorescein. J. Am. Chem. Soc. 126(43):14079–14085. https://doi.org/10.1021/ja048241k
Ueno T, Urano Y, Kojima H, Nagano T (2006) Mechanism-based molecular design of highly selective fluorescence probes for nitrative stress. J. Am. Chem. Soc. 128(33):10640–10641. https://doi.org/10.1021/ja061972v
Gabe Y, Urano Y, Kikuchi K, Kojima H, Nagano T (2004) Highly sensitive fluorescence probes for nitric oxide based on boron dipyrromethene chromophore-rational design of potentially useful bioimaging fluorescence probe. J. Am. Chem. Soc. 126(10):3357–3367. https://doi.org/10.1021/ja037944j
Kasha M (1950) Characterization of electronic transitions in complex molecules. Discuss. Faraday. Soc. 9:14–19. https://doi.org/10.1039/DF9500900014
Zhao GJ, Liu JY, Zhou LC, Han KL (2007) Site-selective photoinduced electron transfer from alcoholic solvents to the chromophore facilitated by hydrogen bonding: a new fluorescence quenching mechanism. J. Phys. Chem. B 111(30):8940–8945. https://doi.org/10.1021/jp0734530
Ros P, Schuit GCA (1966) Molecular orbital calculations on copper chloride complexes. Theor. Chim. Acta 4(1):1–12. https://doi.org/10.1007/BF00526005
Pollock JB, Cook TR, Stang PJ (2012) Photophysical and computational investigations of bis(phosphine) organoplatinum(II) metallacycles. J. Am. Chem. Soc. 134:10607–10620. https://doi.org/10.1021/ja3036515
Deng W-Q, Sun L, Huang J-D, Chai S, Wen S-H, Han K-L (2015) Quantitative prediction of charge mobilities of π-stacked systems by first-principles simulation. Nat. Protoc. 10:632. https://doi.org/10.1038/nprot.2015.038https://www.nature.com/articles/nprot.2015.038#supplementary-information
Boys SF, Bernardi F (1970) The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors. Mol. Phys. 19(4):553–566
Zhao G-J, Han K-L (2012) Hydrogen bonding in the electronic excited state. Acc. Chem. Res. 45(3):404–413. https://doi.org/10.1021/ar200135h
Nikolin AA, Kramarova EP, Shipov AG, Baukov YI, Negrebetsky VV, Korlyukov AA, Arkhipov DE, Bowden A, Bylikin SY, Bassindale AR, Taylor PG (2012) Synthesis, structures, and stereodynamic behavior of novel pentacoordinate fluorosilanes: fluorosilyl derivatives of Proline. Organometallics 31:4988–4997. https://doi.org/10.1021/om3002697
Code availability
N/A.
Funding
The research leading to these results received funding from the National Natural Science Foundation of China under Grant Agreement No. 10874096 and the Shandong Provincial Natural Science Foundation, China, under the Grant Agreement No. ZR2014AM025.
Author information
Authors and Affiliations
Contributions
Xiaochen Wang: Conceptualization, Methodology, Writing—Original draft preparation. Tianxin Bai: Conceptualization, Methodology, Software, Visualization, Validation. Tianshu Chu: Conceptualization, Supervision, Funding acquisition, Writing—Reviewing and Editing.
Corresponding author
Ethics declarations
Ethics approval
N/A.
Consent to participate
N/A.
Consent for publication
N/A.
Conflict of interest
The authors declare no competing interests.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary information
ESM 1
(DOCX 580 kb)
Rights and permissions
About this article
Cite this article
Wang, X., Bai, T. & Chu, T. A molecular design for a turn-off NIR fluoride chemosensor. J Mol Model 27, 104 (2021). https://doi.org/10.1007/s00894-021-04716-1
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s00894-021-04716-1