Abstract
The electronic properties of pristine graphdiyne nanosheet (GDY) and boron-doped graphdiyne (BGDY) were scrutinized using the first-principles calculation. Furthermore, the adsorption energy, charge transfer, and electrical conductivity variation of the 5-fluorouracil (5FU) drugs on both the GDY and BGDY sheet surfaces were reported and were employed to investigate the binding among them. The tendency of pristine GDY to 5FU drug was already identified to be negligible. Moreover, the band gap energy was changed only around 3.31% after 5FU adsorption on the GDY sheet. The adsorption energy of 5FU on the BGDY was computed in both gas and water solvent media and was about − 32.72 and − 41.96 kcal/mol, respectively. The moderate amount of solvation energy indicates the good solubility of the implemented drugs in the aqueous medium. Moreover, significant transfer of charge from the 5FU to the BGDY sheet results in a substantially positive charge for B, which is a prerequisite of the adsorption of the 5FU molecule with the suitable binding energy. In addition, after 5FU adsorption, the electrical conductivity of BGDY was increased by about 25.5%, and based on this result, the BGDY is a suitable electronic sensor for 5FU detection unlike to pristine GDY.
Similar content being viewed by others
Data availability
Confirm
References
Skehan P, Storeng R, Scudiero D, Monks A, McMahon J, Vistica D, Warren JT, Bokesch H, Kenney S, Boyd MR (1990) New colorimetric cytotoxicity assay for anticancer-drug screening. JNCI: Journal of the National Cancer Institute 82:1107–1112
Tew KD (1994) Glutathione-associated enzymes in anticancer drug resistance. Cancer Res. 54:4313–4320
Chen S, Hassanzadeh-Aghdam M, Ansari R (2018) An analytical model for elastic modulus calculation of SiC whisker-reinforced hybrid metal matrix nanocomposite containing SiC nanoparticles. J Alloys Compd 767:632–641
Dharap S, Wang Y, Chandna P, Khandare J, Qiu B, Gunaseelan S, Sinko P, Stein S, Farmanfarmaian A, Minko T (2005) Tumor-specific targeting of an anticancer drug delivery system by LHRH peptide. Proc. Natl. Acad. Sci. 102:12962–12967
Krukiewicz K, Zak JK (2016) Biomaterial-based regional chemotherapy: local anticancer drug delivery to enhance chemotherapy and minimize its side-effects. Mater. Sci. Eng. C 62:927–942
Yang F, Yang F, Wang G, Kong T, Wang H, Zhang C (2020) Effects of water temperature on tissue depletion of florfenicol and its metabolite florfenicol amine in crucian carp (Carassius auratus gibelio) following multiple oral doses. Aquaculture 515:734542
Su H, Williams P, Thompson M (1995) Platinum anticancer drug binding to DNA detected by thickness-shear-mode acoustic wave sensor. Anal. Chem. 67:1010–1013
Banerjee SS, Chen D-H (2008) Multifunctional pH-sensitive magnetic nanoparticles for simultaneous imaging, sensing and targeted intracellular anticancer drug delivery. Nanotechnology 19:505104
Liu L, Li J, Yue F, Yan X, Wang F, Bloszies S, Wang Y (2018) Effects of arbuscular mycorrhizal inoculation and biochar amendment on maize growth, cadmium uptake and soil cadmium speciation in Cd-contaminated soil. Chemosphere 194:495–503
Elmi S, Foroughi MM, Dehdab M, Shahidi-Zandi M (2019) Computational evaluation of corrosion inhibition of four quinoline derivatives on carbon steel in aqueous phase. Iranian Journal of Chemistry and Chemical Engineering (IJCCE) 38:185–200
Mohajeri S, Noei M, Salari AA, Hoseini Z, Ahmadaghaei N, Molaei N (2018) Adsorption of phosphine on a BN nanosurface. Iranian Journal of Chemistry and Chemical Engineering (IJCCE) 37:39–45
Mohajeri S, Noei M, Molaei N (2017) Cyanogen, methylacetylene, hydroquinone, ethylacetylene, aniline, pyrrole, and ethanol detection by using BNNT: DFT studies. Iranian Journal of Chemistry and Chemical Engineering (IJCCE) 36:89–98
Mohajeri S, Kamani M, Salari AA, Noei M, Ebrahimikia M, Ahmadaghaei N, Molaei N (2019) Adsorption of aniline toxic gas on a BeO nanotube. Iranian Journal of Chemistry and Chemical Engineering (IJCCE) 38:43–48
He L, Liu J, Liu Y, Cui B, Hu B, Wang M, Tian K, Song Y, Wu S, Zhang Z (2019) Titanium dioxide encapsulated carbon-nitride nanosheets derived from MXene and melamine-cyanuric acid composite as a multifunctional electrocatalyst for hydrogen and oxygen evolution reaction and oxygen reduction reaction. Appl Catal B: Environ 248:366–379
Wang M, Hu M, Hu B, Guo C, Song Y, Jia Q, He L, Zhang Z, Fang S (2019) Bimetallic cerium and ferric oxides nanoparticles embedded within mesoporous carbon matrix: Electrochemical immunosensor for sensitive detection of carbohydrate antigen 19-9. Biosensors and Bioelectronics 135:22–29
Nagarajan V, Chandiramouli R (2018) Alcohol molecules adsorption on graphane nanosheets–a first-principles investigation. Appl. Surf. Sci. 441:734–743
Wang Y, Yao M, Ma R, Yuan Q, Yang D, Cui B, Ma C, Liu M, Hu D (2020) Design strategy of barium titanate/polyvinylidene fluoride-based nanocomposite films for high energy storage. J Mater Chem A 8:884–917
Zhang Y, Guo Y, Zhou G, Wang J (2019) Telomere length and biological aging in atherosclerosis. Nanosci Nanotechnol Lett 11:265–272
Chen R, Shi R, Zhou M, Sun J, Jiang F, Fu C, Feng S, Wang C, Teng G (2019) Additional radiotherapy for superficial esophageal cancer following endoscopic submucosal dissection (ESD): A single center retrospective study. Nanosci Nanotechnol Lett 11:111–117
Patsula V, Borisova T, Kostiv U, Galkin M, Pastukhov A, Horák D (2019) Effect of Fe3O4@ SiO2 nanoparticle diameter on glutamate transport in brain nerve terminals. Nanosci Nanotechnol Lett 11:61–69
Tian X, Bai B, Chen Y, Liu Y, Huang R, Li Z, Wu C (2019) An immunoassay method based on chemiluminescence and magnetic nanoparticles for detection of soluble programmed death 1 in cancer patients’ serum. Nanosci Nanotechnol Lett 11:279–285
Barraza-Lopez S, Kaloni TP (2018) Water splits to degrade two-dimensional group-IV monochalcogenides in nanoseconds. ACS central science 4:1436–1446
Li G, Li Y, Liu H, Guo Y, Li Y, Zhu D (2010) Architecture of graphdiyne nanoscale films. Chem. Commun. 46:3256–3258
Qi H, Yu P, Wang Y, Han G, Liu H, Yi Y, Li Y, Mao L (2015) Graphdiyne oxides as excellent substrate for electroless deposition of Pd clusters with high catalytic activity. J. Am. Chem. Soc. 137:5260–5263
Wang N, Li X, Tu Z, Zhao F, He J, Guan Z, Huang C, Yi Y, Li Y (2018) Synthesis and electronic structure of boron-graphdiyne with an sp-hybridized carbon skeleton and its application in sodium storage. Angew. Chem. 130:4032–4037
Mortazavi B, Shahrokhi M, Zhuang X, Rabczuk T (2018) Boron–graphdiyne: a superstretchable semiconductor with low thermal conductivity and ultrahigh capacity for Li. Na and Ca ion storage, Journal of Materials Chemistry A 6:11022–11036
Grimme S (2004) Accurate description of van der Waals complexes by density functional theory including empirical corrections. J. Comput. Chem. 25:1463–1473
Hajlaoui S, Chaabane I, Lhoste J, Bulou A, Guidara K (2016) Structural characterization, vibrational spectroscopy accomplished with DFT calculation, thermal and dielectric behaviors in a new organic-inorganic tertrapropylammonium aquapentachlorostannate dihydrate compound. J. Alloys Compd. 679:302–315
Muz İ, Atiş M (2016) Boron-doped hydrogenated Al3 clusters: a material for hydrogen storage. J. Alloys Compd. 667:275–281
Schmidt MW, Baldridge KK, Boatz JA, Elbert ST, Gordon MS, Jensen JH, Koseki S, Matsunaga N, Nguyen KA, Su S, Windus TL, Dupuis M, Montgomery Jr JA (1993) General atomic and molecular electronic structure system. J. Comput. Chem. 14:1347–1363
Boys SF, Bernardi F (1970) The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors. Mol. Phys. 19:553–566
O'boyle NM, Tenderholt AL, Langner KM (2008) cclib: a library for package-independent computational chemistry algorithms. J. Comput. Chem. 29:839–845
Long M, Tang L, Wang D, Li Y, Shuai Z (2011) Electronic structure and carrier mobility in graphdiyne sheet and nanoribbons: theoretical predictions. ACS Nano 5:2593–2600
Nagarajan V, Dharani S, Chandiramouli R (2018) Density functional studies on the binding of methanol and ethanol molecules to graphyne nanosheet. Computational and Theoretical Chemistry 1125:86–94
Rad AS, Ayub K (2017) Adsorption properties of acetylene and ethylene molecules onto pristine and nickel-decorated Al12N12 nanoclusters. Mater. Chem. Phys. 194:337–344
Ullah H, Shah A-u-HA, Bilal S, Ayub K (2013) DFT study of polyaniline NH3, CO2, and CO gas sensors: comparison with recent experimental data. The Journal of Physical Chemistry C 117:23701–23711
Snehha P, Nagarajan V, Chandiramouli R (2018) Doped aluminum nanocones as an efficient electron field emitter: a first-principles investigation. Inorg. Chem. Commun. 96:5–12
Ullah H, Ayub K, Ullah Z, Hanif M, Nawaz R, Bilal S (2013) Theoretical insight of polypyrrole ammonia gas sensor. Synth. Met. 172:14–20
Nagarajan V, Chandiramouli R (2018) Adsorption behavior of NH3 and NO2 molecules on stanene and stanane nanosheets–a density functional theory study. Chem. Phys. Lett. 695:162–169
Kaloni TP, Schreckenbach G, Freund MS (2014) Large enhancement and tunable band gap in silicene by small organic molecule adsorption. J. Phys. Chem. C 118:23361–23367
Hazrati MK, Javanshir Z, Bagheri Z (2017) B24N24 fullerene as a carrier for 5-fluorouracil anti-cancer drug delivery: DFT studies. J. Mol. Graph. Model. 77:17–24
Kaloni TP (2014) Tuning the structural, electronic, and magnetic properties of germanene by the adsorption of 3d transition metal atoms. J. Phys. Chem. C 118:25200–25208
Ri M-H, Jang Y-M, Ri U-S, Yu C-J, Kim K-I, Kim S-U (2018) Ab initio investigation of adsorption characteristics of bisphosphonates on hydroxyapatite (001) surface. J. Mater. Sci. 53:4252–4261
Author information
Authors and Affiliations
Contributions
J. Yuan and A. Mohamadi have same contributed in the investigation, methodology, validation, writing—review and editing.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflict of interest.
Ethical approval
N/A
Consent to participate
Confirm
Consent to publish
Confirm
Code availability
N/A
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
About this article
Cite this article
Yuan, J., Mohamadi, A. Study the adsorption process of 5-Fluorouracil drug on the pristine and doped graphdiyne nanosheet. J Mol Model 27, 32 (2021). https://doi.org/10.1007/s00894-020-04629-5
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s00894-020-04629-5