Abstract
We have evaluated the performance of 15 density functionals of diverse complexity on the geometry optimization and energetic evaluation of model reaction steps present in the proposed reaction mechanisms of Cu(I)-catalyzed indole synthesis and click chemistry of iodoalkynes and azides. The relative effect of the Cu+ ligand on the relative strength of Cu+-alkyne interactions, and the strong preference for a π-bonding mode is captured by all functionals. The best energetic correlations with MP2 are obtained with PBE0, M06-L, and PBE1PW91, which also provide good quality geometries. Furthermore, PBE0 and PBE1PW91 afford the best agreement with the high-level CCSD(T) computations of the deprotonation energies of Cu+-coordinated eneamines, where MP2 strongly disagrees with CCSD(T) and the examined DFT functionals. PBE0 also emerged as the most suitable functional for the study of the energetics and geometries of Cu+ hydrides, while at the same time correctly capturing the influence of the Cu+ ligands on the metal reactivity.
Similar content being viewed by others
References
Miyaura N, Suzuki A (1995) Chem Rev 95:2457–2483
Cui X, Burgess K (2005) Chem Rev 105:3272–3296
Seregin IV, Gevorgyan V (2007) Chem Soc Rev 36:1173–1193
Negishi E (2007) Bull Chem Soc Jpn 80:233–257
Bernini R, Fabrizi G, Sferrazza A, Cacchi S (2009) Angew Chem Int Ed 48:8078–8081
Hein JE, Tripp JC, Krasnova LB, Sharpless KB, Fokin VV (2009) Angew Chem Int Ed 48:8018–8021
Das JP, Chechik H, Marek I (2009) Nat Chem 1:128–132
Himo F, Lovell T, Hilgraf R, Rostovtsev VV, Noodleman L, Sharpless KB, Fokin VV (2005) J Am Chem Soc 127:210–216
Cantillo D, Ávalos M, Babiano R, Cintas P, Jiménez JL, Palacios JC (2011) Org Biomol Chem 9:2952–2958
Sousa SF, Fernandes PA, Ramos MJ (2007) J Phys Chem A 111:10439–10452
Becke AD (1993) J Chem Phys 98:5648–5652
Lee C, Yang W, Parr RG (1988) Phys Rev B 37:785–789
Hertwig RH, Koch W (1995) J Comput Chem 16:576–585
Perdew JP (1991) Electronic Structure of Solids ‘91. In: Ziesche P, Eschrig H (eds). Akademie, Berlin. 17: 11–20
Perdew JP, Burke K, Ernzerhof M (1996) Phys Rev Lett 77:3865–3868
Hamprecht FA, Cohen AJ, Tozer DJ, Handy NC (1998) J Chem Phys 109:6264–6271
Wilson PJ, Bradley TJ, Tozer DJ (2001) J Chem Phys 115:9233–9242
Becke AD (1988) Phys Rev A 38:3098–3100
Adamo C, Barone V (1999) J Chem Phys 110:6158–6170
Xu X, Zhang Q, Muller RP, Goddard WA (2005) J Chem Phys 122:014105
Tao JM, Perdew JP, Staroverov VN, Scuseria GE (2003) Phys Rev Lett 91:146401
Staroverov VN, Scuseria GE, Tao JM, Perdew JP (2004) J Chem Phys 120:6898–6911
Perdew JP, Ruzsinszky A, Tao J, Csonka GIG, Scuseria GE (2007) Phys Rev A 76:042506
Zhao Y, Truhlar DG (2006) J Chem Phys 125:194101
Staroverov VN, Scuseria GE, Tao JM, Perdew JP (2003) J Chem Phys 119:12129–12137
Zhao Y, Truhlar DG (2007) Theor Chem Acc 120:215–241
Zhao Y, Truhlar DG (2006) J Phys Chem A 110:13126–13130
Baker J, Kessi A, Delley B (1996) J Chem Phys 105:192–212
Ditchfield R, Hehre WJ, Pople JA (1971) J Chem Phys 54:724–728
Hehre WJ, Ditchfield R, Pople JA (1972) J Chem Phys 56:2257–2261
Stevens WJ, Krauss M, Basch H, Jasien PG (1992) Can J Chem 70:612–630
Krishnan R, Binkley JS, Seeger R, Pople JA (1980) J Chem Phys 72:650–654
Hariharan PC, Pople JA (1973) Theor Chim Acta 28:213–222
Frisch MJ, Pople JA, Binkley JS (1984) J Chem Phys 80:3265–3269
Swart M, Güell M, Luis JM, Solà M (2010) J Phys Chem A 114:7191–7197
Clark T, Chandrasekhar J, Spitznagel GW, Schleyer PVR (1983) J Comput Chem 4:294–301
Glukhovtsev MN, Pross A, McGrath MP, Radom L (1995) J Chem Phys 103:1878–1885
Balabanov NB, Peterson KA (2005) J Chem Phys 123:64107
Neves AR, Fernandes PA, Ramos MJ (2011) J Chem Theory Comput 7:2059–2067
Ribeiro AJM, Ramos MJ, Fernandes PA (2010) J Chem Theory Comput 6:2281–2292
Silva PJ, Ramos MJ (2011) Comput Theor Chem 966:120–126
Peterson KA, Shepler BC, Figgen D, Stoll H (2006) J Phys Chem A 110:13877–13883
Dunning TH (1989) J Chem Phys 90:1007–1023
Kendall RA, Dunning TH, Harrison RJ (1992) J Chem Phys 96:6796–6806
Čížek J (1966) J Chem Phys 45:4256–4267
Raghavachari K, Trucks GW, Pople JA, Head-Gordon M (1989) Chem Phys Lett 157:479–483
Olson RM, Bentz JL, Kendall RA, Schmidt MW, Gordon MS (2007) J Chem Theory Comput 3:1312–1328
Bentz JL, Olson RM, Gordon MS, Schmidt MW, Kendall RA (2007) Comput Phys Commun 176:589–600
Piecuch P, Kucharski SA, Kowalski K, Musiał M (2002) Comput Phys Commun 149:71–96
Schmidt MW, Baldridge KK, Boatz JA, Elbert ST, Gordon MS, Jensen JH, Koseki S, Matsunaga N, Nguyen KA, Su S, Windus TL, Dupuis M, Montgomery JA (1993) J Comput Chem 14:1347–1363
Gordon M, Schmidt M (2005) Theory and application of computational chemistry: the first forty years. In: Dykstra CE, Frenking G, Kim KS, Scuseria GE (eds). Elsevier, Amsterdam, pp 1167 – 1189
A. A. Granovsky PC GAMESS/Firefly version 7.1.G http://classic.chem.msu.su/gran/gamess/index.html.
Thompson JS, Bradley AZ, Park K-H, Dobbs KD, Marshall W (2006) Organometallics 25:2712–2714
Dias HVR, Flores JA, Wu J, Kroll P (2009) J Am Chem Soc 131:11249–11255
Brás NF, Perez MAS, Fernandes PA, Silva PJ, Ramos MJ (2011) J Chem Theory Comput 7:3898–3908
Ke Z, Cundari TR (2010) Organometallics 29:821–834
Ge Y, Gordon MS, Piecuch P, Włoch M, Gour JR (2008) J Phys Chem A 112:11873–11884
Acknowledgments
Research at REQUIMTE is supported by Fundação para a Ciência e a Tecnologia through grant no. PEst-C/EQB/LA0006/2011. This work has been financed by FEDER through Programa Operacional Factores de Competitividade – COMPETE and by Portuguese Funds through FCT – Fundação para a Ciência e a Tecnologia under project PTDC/QUI-QUI/111288/2009. This work has also been supported by the Chemical Sciences, Geosciences and Biosciences Division, Office of Basic Energy Sciences, Office of Science, U.S. Department of Energy (Grant No. DE-FG02-01ER15228; P.P.). Useful discussions with Professor Wei Li and Mr. Jared A. Hansen are gratefully appreciated, too.
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
ESM 1
Geometries and energies of every molecule optimized with each density functional and with MP2. (DOC 1184 kb)
Rights and permissions
About this article
Cite this article
Bernardo, C.E.P., Bauman, N.P., Piecuch, P. et al. Evaluation of density functional methods on the geometric and energetic descriptions of species involved in Cu+-promoted catalysis. J Mol Model 19, 5457–5467 (2013). https://doi.org/10.1007/s00894-013-2045-z
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00894-013-2045-z