Abstract
Human neuroglobin (Ngb) is a hexacoordinated globin which binds some small ligands. Its function is still not well-established, even though Ngb seems to be implicated in the protection against neurodegenerative diseases. It has been shown by molecular dynamics and crystallography that ligand binding could occur thanks to a haem sliding mechanism specific to Ngb. In this paper, we studied some regions which could participate in this mechanism. We used UV–visible spectroscopy, CD and NMR to have a look on the protein structure and NMR and stopped-flow to study the ligand binding properties of the proteins. In the haem environment we mutated the distal histidine H64, the alanine A90 which is on the proximal F helix and the phenylalanine F106 which is close to the haem. We showed that both H64V and A90P variants, which affect the haem coordination, seemed to be important to haem and protein secondary structure stabilities whereas F106L mutation did not affect those properties. Then we confirmed that the cyanide binding kinetics were isomer dependent on wild-type Ngb and A90P and F106L variants. H64V Ngb variant had a behavior similar to wild-type Mb or Hb with a loss of the haem kinetic differentiation. Moreover, our results suggested that one haem isomer was more sensitive to A90P and F106L mutations. Those results brought some evidence that the haem sliding mechanism could occur for the cyanide binding and could be haem isomer dependent. The isomer forms may play distinct roles for the potential function of Ngb in vivo.
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Burmester T, Weich B, Reinhardt S, Hankeln T (2000) A vertebrate globin expressed in the brain. Nature 407:520–523
Schmidt M, Giessl A, Laufs T, Hankeln T, Wolfrum U, Burmester T (2003) J Biol Chem 278:1932–1935
D’Aprile A, Scrima R, Quarato G, Tataranni T, Falzetti F, Di Ianni M, Gemei M, Del Vecchio L, Piccoli C, Capitanio N (2014) Stem Cells (Dayton, Ohio) 32:1267–1277
Reuss S, Banica O, Elgurt M, Mitz S, Disque-Kaiser U, Riemann R, Hill M, Jaquish DV, Koehrn FJ, Burmester T, Hankeln T, Woolf NK (2016) Mol Neurobiol 53:1461–1477
Sun Y, Jin K, Mao XO, Zhu Y, Greenberg DA (2001) Proc Natl Acad Sci USA 98:15306–15311
Fordel E, Geuens E, Dewilde S, De Coen W, Moens L (2004) IUBMB Life 56:681–687
Fordel E, Thijs L, Martinet W, Schrijvers D, Moens L, Dewilde S (2007) Gene 398:114–122
Duong TT, Witting PK, Antao ST, Parry SN, Kennerson M, Lai B, Vogt S, Lay PA, Harris HH (2009) J Neurochem 108:1143–1154
Jin K, Mao Y, Mao X, Xie L, Greenberg DA (2010) Stroke 41:557–559
Jin K, Mao X, Xie L, Greenberg DA (2011) Acta Neurochir Suppl 111:315–319
Yu Z, Poppe JL, Wang X (2013) Oxidative Med Cell Longev 2013:756989
Fordel E, Thijs L, Martinet W, Lenjou M, Laufs T, Van Bockstaele D, Moens L, Dewilde S (2006) Neurosci Lett 410:146–151
Li RC, Morris MW, Lee SK, Pouranfar F, Wang Y, Gozal D (2008) Brain Res 1190:159–166
Antao ST, Duong TT, Aran R, Witting PK (2010) Antioxid Redox Signal 13:769–781
Vorasubin N, Hosokawa S, Hosokawa K, Ishiyama G, Ishiyama A, Lopez IA (2016) Brain Res 1630:56–63
Guimaraes BG, Hamdane D, Lechauve C, Marden MC, Golinelli-Pimpaneau B (2014) Acta Crystallogr Sect D Biol Crystallogr 70:1005–1014
Dewilde S, Kiger L, Burmester T, Hankeln T, Baudin-Creuza V, Aerts T, Marden MC, Caubergs R, Moens L (2001) J Biol Chem 276:38949–38955
Couture M, Burmester T, Hankeln T, Rousseau DL (2001) J Biol Chem 276:36377–36382
Hamdane D, Kiger L, Dewilde S, Uzan J, Burmester T, Hankeln T, Moens L, Marden MC (2005) FEBS J 272:2076–2084
Picotti P, Dewilde S, Fago A, Hundahl C, De Filippis V, Moens L, Fontana A (2009) FEBS J 276:7027–7039
Xu J, Li L, Yin G, Li H, Du W (2009) J Inorg Biochem 103:1693–1701
Gerd HT, La Mar N, Krishnamoorthi R (1984) J Am Chem Soc 106:6395–6401
Jue T, La Mar GN (1984) Biochem Biophys Res Commun 119:640–645
La Mar GN, Yamamoto Y, Jue T, Smith KM, Pandey RK (1985) Biochemistry 24:3826–3831
Ishikawa H, Takahashi S, Ishimori K, Morishima I (2004) Biochem Biophys Res Commun 324:1095–1100
Du W, Syvitski R, Dewilde S, Moens L, La Mar GN (2003) J Am Chem Soc 125:8080–8081
Nunez M, Guittet E, Pompon D, van Heijenoort C, Truan G (2010) J Biomol NMR 47:289–295
Shulman RG, Wuthrich K, Yamane T, Antonini E, Brunori M (1969) Proc Natl Acad Sci USA 63:623–628
La Mar GN, Budd DL, Viscio DB, Smith KM, Langry KC (1978) Proc Natl Acad Sci USA 75:5755–5759
Docherty JC, Brown SB (1982) Biochem J 207:583–587
Yee S, Peyton DH (1991) FEBS Lett 290:119–122
Pesce A, Dewilde S, Nardini M, Moens L, Ascenzi P, Hankeln T, Burmester T, Bolognesi M (2003) Structure 11:1087–1095
Vallone B, Nienhaus K, Brunori M, Nienhaus GU (2004) Proteins 56:85–92
Ascenzi P, di Masi A, Leboffe L, Fiocchetti M, Nuzzo MT, Brunori M, Marino M (2016) Mol Asp Med. https://doi.org/10.1016/j.mam.2016.10.004
Anselmi M, Brunori M, Vallone B, Di Nola A (2007) Biophys J 93:434–441
Anselmi M, Brunori M, Vallone B, Di Nola A (2008) Biophys J 95:4157–4162
Bocahut A, Bernad S, Sebban P, Sacquin-Mora S (2009) J Phys Chem B 113:16257–16267
Vallone B, Nienhaus K, Matthes A, Brunori M, Nienhaus GU (2004) Proc Natl Acad Sci USA 101:17351–17356
Nadra AD, Marti MA, Pesce A, Bolognesi M, Estrin DA (2008) Proteins 71:695–705
Xu J, Yin G, Huang F, Wang B, Du W (2010) J Mol Model 16:759–770
Xu J, Yin G, Du W (2011) Proteins 79:191–202
Uno T, Ryu D, Tsutsumi H, Tomisugi Y, Ishikawa Y, Wilkinson AJ, Sato H, Hayashi T (2004) J Biol Chem 279:5886–5893
Hamdane D, Kiger L, Dewilde S, Green BN, Pesce A, Uzan J, Burmester T, Hankeln T, Bolognesi M, Moens L, Marden MC (2004) Micron (Oxford, England: 1993) 35:59–62
Smagghe BJ, Sarath G, Ross E, Hilbert JL, Hargrove MS (2006) Biochemistry 45:561–570
Fago A, Mathews AJ, Moens L, Dewilde S, Brittain T (2006) FEBS Lett 580:4884–4888
Astudillo L, Bernad S, Derrien V, Sebban P, Miksovska J (2012) Biochemistry 51:9984–9994
Bocahut A, Derrien V, Bernad S, Sebban P, Sacquin-Mora S, Guittet E, Lescop E (2013) J Biol Inorg Chem 18:111–122
Avella G, Ardiccioni C, Scaglione A, Moschetti T, Rondinelli C, Montemiglio LC, Savino C, Giuffre A, Brunori M, Vallone B (2014) Acta Crystallogr Sect D Biol Crystallogr 70:1640–1648
Pesce A, Dewilde S, Nardini M, Moens L, Ascenzi P, Hankeln T, Burmester T, Bolognesi M (2004) Micron (Oxford, England: 1993) 35:63–65
Codutti L, Picotti P, Marin O, Dewilde S, Fogolari F, Corazza A, Viglino P, Moens L, Esposito G, Fontana A (2009) FEBS J 276:5177–5190
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) J Biomol NMR 6:277–293
Whitmore L, Wallace BA (2004) Nucleic Acids Res 32:W668–W673
Whitmore L, Wallace BA (2008) Biopolymers 89:392–400
Provencher SW, Glockner J (1981) Biochemistry 20:33–37
Van Stokkum IH, Spoelder HJ, Bloemendal M, van Grondelle R, Groen FC (1990) Anal Biochem 191:110–118
Hamdane D, Kiger L, Dewilde S, Green BN, Pesce A, Uzan J, Burmester T, Hankeln T, Bolognesi M, Moens L, Marden MC (2003) J Biol Chem 278:51713–51721
de Duve C (1948) Acta Chim Scand 2:264–290
Paul KG, Theorell H, Akeson A (1953) Acta Chim Scand 7:4
Smith KM (ed) (1975) Porphyrins and metalloporphyrins. Elsevier, New York
Berry EA, Trumpower BL (1987) Anal Biochem 161:15
Nicolis S, Monzani E, Ciaccio C, Ascenzi P, Moens L, Casella L (2007) Biochem J 407:89–99
Zhao C, Li L, Wang L, Ji H (2006) Chin Sci Bull 51:2581–2585
Bondarenko V, Dewilde S, Moens L, La Mar GN (2006) J Am Chem Soc 128:12988–12999
Bocahut A, Derrien VR, Bernad S, Sebban P, Sacquin-Mora S, Guittet E, Lescop E (2013) JBIC J Biol Inorg Chem 18:111–122
Herold S, Fago A, Weber RE, Dewilde S, Moens L (2004) J Biol Chem 279:22841–22847
Ascenzi P, di Masi A, Gullotta F, Mattu M, Ciaccio C, Coletta M (2010) Biochem Biophys Res Commun 393:196–200
Dou Y, Olson JS, Wilkinson AJ, Ikeda-Saito M (1996) Biochemistry 35:7017–7018
Bolognesi M, Cannillo E, Ascenzi P, Giacometti GM, Merli A, Brunori M (1982) J Mol Biol 158:305–315
Ringe D, Petsko GA, Kerr DE, Ortiz de Montellano PR (1984) Biochemistry 23:2–4
Johnson KA, Olson JS, Phillips GN Jr (1989) J Mol Biol 207:459–463
Ikeda-Saito M, Hori H, Andersson LA, Prince RC, Pickering IJ, George GN, Sanders CR 2nd, Lutz RS, McKelvey EJ, Mattera R (1992) J Biol Chem 267:22843–22852
Orlowski S, Nowak W (2008) Bio Syst 94:263–266
Picotti P, Marabotti A, Negro A, Musi V, Spolaore B, Zambonin M, Fontana A (2004) Protein Sci 13:1572–1585
Ikeda-Saito M, Horill H, Andersson LA, Prince RC, Pickering IJ, George GN, Sanders CR, Lutz RS, McKelvey EJ, Mattera R (1992) J Biol Chem 267:10
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André, E., Derrien, V., Sebban, P. et al. Impact of A90P, F106L and H64V mutations on neuroglobin stability and ligand binding kinetics. J Biol Inorg Chem 24, 39–52 (2019). https://doi.org/10.1007/s00775-018-1625-x
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DOI: https://doi.org/10.1007/s00775-018-1625-x