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RETRACTED ARTICLE: Structure-based development and optimization of therapy antibody drugs against TNFα

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This article was retracted on 09 December 2015

Abstract

Previously, we reported on the crystal structures of the Fab fragments of two food and drug administration approved therapeutic antibodies, Infliximab and Adalimumab, in complex with TNFα. The structurally identified epitopes on TNFα reveal the mechanism of TNFα inhibition by partially overlapping with the TNFα-receptor interface. In this study, we launched a screen of a phage display library to isolate novel anti-TNFα antibodies based on the adalimumab epitope. Structural analysis, the phage display antibody isolation technology, step-by-step antibody optimization, complementarity-determining region residues random mutagenesis, phage ELISA, binding affinity characterization, and cell signaling assays were used for the development and optimization of the novel anti-TNFα antibodies. Moreover, one of the novel antibodies, hAta09, has a superior inhibitory effect on TNFα function and signaling. Taken together, our report established that the novel anti-TNFα antibody hAta09 may achieve clinical efficacy in a TNFα-associated disease.

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References

  • Baselga J, Cortes J, Kim SB, Im SA, Hegg R, Im YH, Roman L, Pedrini JL, Pienkowski T, Knott A, Clark E, Benyunes MC, Ross G, Swain SM, Group CS (2012) Pertuzumab plus trastuzumab plus docetaxel for metastatic breast cancer. N Engl J Med 366(2):109–119. doi:10.1056/NEJMoa1113216

    Article  CAS  PubMed  Google Scholar 

  • Carter P (2001) Improving the efficacy of antibody-based cancer therapies. Nat Rev Cancer 1(2):118–129. doi:10.1038/35101072

    Article  CAS  PubMed  Google Scholar 

  • Carter PJ (2006) Potent antibody therapeutics by design. Nat Rev Immunol 6(5):343–357. doi:10.1038/nri1837

    Article  CAS  PubMed  Google Scholar 

  • Carter PH, Scherle PA, Muckelbauer JK, Voss ME, Liu RQ, Thompson LA, Tebben AJ, Solomon KA, Lo YC, Li Z, Strzemienski P, Yang G, Falahatpisheh N, Xu M, Wu Z, Farrow NA, Ramnarayan K, Wang J, Rideout D, Yalamoori V, Domaille P, Underwood DJ, Trzaskos JM, Friedman SM, Newton RC, Decicco CP (2001) Photochemically enhanced binding of small molecules to the tumor necrosis factor receptor-1 inhibits the binding of TNF-alpha. Proc Natl Acad Sci USA 98(21):11879–11884

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Carter P, Smith L, Ryan M (2004) Identification and validation of cell surface antigens for antibody targeting in oncology. Endocr Relat Cancer 11(4):659–687. doi:10.1677/erc.1.00766

    Article  CAS  PubMed  Google Scholar 

  • Chan KF, Siegel MR, Lenardo JM (2000) Signaling by the TNF receptor superfamily and T cell homeostasis. Immunity 13(4):419–422

    Article  CAS  PubMed  Google Scholar 

  • Citri A, Yarden Y (2006) EGF-ERBB signalling: towards the systems level. Nat Rev Mol Cell Biol 7(7):505–516. doi:10.1038/nrm1962

    Article  CAS  PubMed  Google Scholar 

  • Eck MJ, Sprang SR (1989) The structure of tumor necrosis factor-alpha at 2.6 A resolution. Implications for receptor binding. J Biol Chem 264(29):17595–17605

    CAS  PubMed  Google Scholar 

  • Fu W, Wang Y, Zhang Y, Xiong L, Takeda H, Ding L, Xu Q, He L, Tan W, Bethune AN, Zhou L (2014) Insights into HER2 signaling from step-by-step optimization of anti-HER2 antibodies. MAbs 6(4):978–990. doi:10.4161/mabs.28786

    Article  PubMed Central  PubMed  Google Scholar 

  • Hasegawa A, Takasaki W, Greene MI, Murali R (2001) Modifying TNFalpha for therapeutic use: a perspective on the TNF receptor system. Mini Rev Med Chem 1(1):5–16

    Article  CAS  PubMed  Google Scholar 

  • Hu S, Liang S, Guo H, Zhang D, Li H, Wang X, Yang W, Qian W, Hou S, Wang H, Guo Y, Lou Z (2013) Comparison of the inhibition mechanisms of adalimumab and infliximab in treating tumor necrosis factor alpha-associated diseases from a molecular view. J Biol Chem 288(38):27059–27067. doi:10.1074/jbc.M113.491530

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Hu S, Fu W, Xu W, Yang Y, Cruz M, Berezov SD, Jorissen D, Takeda H, Zhu W (2014) Four-in-one antibodies have superior cancer inhibitory activity against EGFR, HER2, HER3, and VEGF through disruption of HER/MET crosstalk. Cancer Res. doi:10.1158/0008-5472.CAN-14-1670

    Google Scholar 

  • Hu S, Dai H, Zhang T, Fu W, Berezov SD, Chen C, Jorissen D, Takeda H, Bethune AN (2015) Silencing EGFR/HER3 signaling with a novel anti-EGFR domain II/IV antibody. Cancer Lett 357(1):374–383. doi:10.1016/j.canlet.2014.11.053

    Article  CAS  PubMed  Google Scholar 

  • Hutchinson L (2014) Targeted therapies: juggling combinations–not the way forward. Nat Rev Clin Oncol 11(2):64. doi:10.1038/nrclinonc.2013.238

    Article  PubMed  Google Scholar 

  • Idriss HT, Naismith JH (2000) TNF alpha and the TNF receptor superfamily: structure-function relationship(s). Microsc Res Tech 50(3):184–195. doi:10.1002/1097-0029(20000801)50:3<184:AID-JEMT2>3.0.CO;2-H

    Article  CAS  PubMed  Google Scholar 

  • Kola I, Landis J (2004) Can the pharmaceutical industry reduce attrition rates? Nat Rev Drug Discov 3(8):711–715. doi:10.1038/nrd1470

    Article  CAS  PubMed  Google Scholar 

  • Liang S, Dai J, Hou S, Su L, Zhang D, Guo H, Hu S, Wang H, Rao Z, Guo Y, Lou Z (2013) Structural basis for treating tumor necrosis factor alpha (TNFalpha)-associated diseases with the therapeutic antibody infliximab. J Biol Chem 288(19):13799–13807. doi:10.1074/jbc.M112.433961

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Nakano K, Satoh K, Morimatsu A, Ohnuma M, Mabuchi I (2001) Interactions among a fimbrin, a capping protein, and an actin-depolymerizing factor in organization of the fission yeast actin cytoskeleton. Mol Biol Cell 12(11):3515–3526

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Presta LG (2002) Engineering antibodies for therapy. Curr Pharm Biotechnol 3(3):237–256

    Article  CAS  PubMed  Google Scholar 

  • Quesnelle KM, Grandis JR (2011) Dual kinase inhibition of EGFR and HER2 overcomes resistance to cetuximab in a novel in vivo model of acquired cetuximab resistance. Clin Cancer Res Off J Am Assoc Cancer Res 17(18):5935–5944. doi:10.1158/1078-0432.CCR-11-0370

    Article  CAS  Google Scholar 

  • Reichert JM, Rosensweig CJ, Faden LB, Dewitz MC (2005) Monoclonal antibody successes in the clinic. Nat Biotechnol 23(9):1073–1078. doi:10.1038/nbt0905-1073

    Article  CAS  PubMed  Google Scholar 

  • Ren X-L, Xu Y-M, Bao W, Fu H-J, Wu C-G, Zhao Y, Li Z-K, Zhang J, Li S-Q, Chen W-Q (2009) Inhibition of non-small cell lung cancer cell proliferation and tumor growth by vector-based small interfering RNAs targeting HER2/neu. Cancer Lett 281(2):134–143

    Article  CAS  PubMed  Google Scholar 

  • Salfield J, Kaymakcalan J, Tracey D, Roberts A, Kamen R (1998) Generation of fully human anti-TNF antibody D2E7. In: Arthritis and Rheumatism. vol 9. Lippincott Williams & Wilkins 227 east Washington SQ, Philadelphia, PA 19106 USA, p S57

  • Shealy DJ, Visvanathan S (2008) Anti-TNF antibodies: lessons from the past, roadmap for the future. Handb Exp Pharmacol 181:101–129. doi:10.1007/978-3-540-73259-4_5

    Article  CAS  PubMed  Google Scholar 

  • Tao R-H, Maruyama IN (2008) All EGF (ErbB) receptors have preformed homo-and heterodimeric structures in living cells. J Cell Sci 121(19):3207–3217

    Article  CAS  PubMed  Google Scholar 

  • Weisman MH, Moreland LW, Furst DE, Weinblatt ME, Keystone EC, Paulus HE, Teoh LS, Velagapudi RB, Noertersheuser PA, Granneman GR, Fischkoff SA, Chartash EK (2003) Efficacy, pharmacokinetic, and safety assessment of adalimumab, a fully human anti-tumor necrosis factor-alpha monoclonal antibody, in adults with rheumatoid arthritis receiving concomitant methotrexate: a pilot study. Clin Ther 25(6):1700–1721

    Article  CAS  PubMed  Google Scholar 

  • Wiens A, Venson R, Correr CJ, Otuki MF, Pontarolo R (2010) Meta-analysis of the efficacy and safety of adalimumab, etanercept, and infliximab for the treatment of rheumatoid arthritis. Pharmacotherapy 30(4):339–353

    Article  CAS  PubMed  Google Scholar 

  • Zhang Q, Park E, Kani K, Landgraf R (2012) Functional isolation of activated and unilaterally phosphorylated heterodimers of ERBB2 and ERBB3 as scaffolds in ligand-dependent signaling. Proc Natl Acad Sci USA 109(33):13237–13242. doi:10.1073/pnas.1200105109

    Article  PubMed Central  CAS  PubMed  Google Scholar 

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Acknowledgments

We thank Celplor LLC and ProMab Biotechnologies, Inc., for help on mammalian cell based recombinant protein production; Dr. Cheng Chen, of Tianjin University, and Dr. Tai An, of Union Medical College, for helpful discussions. This work was supported by the National Natural Science Foundation of China (Grant nos. 31170678 and 31000332).

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The authors declare that they have no conflict of interest.

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Correspondence to Augus N. Bethune or Yajun Guo.

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Handling Editor: D. Tsikas.

Wenyan Fu, Xiaoze Wang, and Weili Yang have contributed equally to this study.

The Publisher and Editor retract this article in accordance with the recommendations of the Committee on Publication Ethics (COPE). After a thorough investigation we have strong reason to believe that the peer review process was compromised. In addition some author identities and given institutional addresses could not be confirmed.

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Fu, W., Wang, X., Yang, W. et al. RETRACTED ARTICLE: Structure-based development and optimization of therapy antibody drugs against TNFα. Amino Acids 47, 1259–1266 (2015). https://doi.org/10.1007/s00726-015-1954-9

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  • DOI: https://doi.org/10.1007/s00726-015-1954-9

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