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Correlation Studies of HEPT Derivatives Using Swarm Intelligence and Support Vector Machines

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Summary.

Two novel algorithms based on particle swarm optimization (PSO) and support vector machine (SVM) have been employed to obtain predictive QSAR models of anti-HIV-1 activity of HEPT derivatives. The results obtained by using the adopted PSO and SVM for structure-activity correlation determination were in close agreement with previous multiple linear regression models, which are reasonably satisfying, based on both statistical significance and predictive ability.

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References

  • E De Clercq (1998) Antiviral Res 38 153 Occurrence Handle10.1016/S0166-3542(98)00025-4 Occurrence Handle9754886

    Article  PubMed  Google Scholar 

  • D Richman C-K Shih I Lowy J Rose P Prodanovich S Goff J Griffin (1991) Proc Natl Acad Sci USA 88 11241 Occurrence Handle1722324

    PubMed  Google Scholar 

  • M Carla Re I Bon P Monari M Borderi D Gibellini P Schiavone F Vitone F Chiodo M La Placa (2003) Int J Antimicrob Agents 22 388 Occurrence Handle10.1016/S0924-8579(03)00082-7 Occurrence Handle14522102

    Article  PubMed  Google Scholar 

  • S Hannongbua L Lawtrakul J Limtrakul (1996) J Comput-Aided Mol Des 10 145 Occurrence Handle10.1007/BF00402822 Occurrence Handle8741018

    Article  PubMed  Google Scholar 

  • S Hannongbua L Lawtrakul CA Sotriffer BM Rode (1996) Quant Struct-Act Relat 15 389

    Google Scholar 

  • S Hannongbua K Nivesanond L Lawtrakul P Pungpo P Wolschann (2001) J Chem Inf Comput Sci 43 848 Occurrence Handle10.1021/ci0001278

    Article  Google Scholar 

  • P Pungpo S Hannongbua P Wolschann (2003) Curr Med Chem 10 1661

    Google Scholar 

  • JM Lumo FH Ferretti (1997) J Chem Inf Comput Sci 37 392 Occurrence Handle10.1021/ci960487o Occurrence Handle9090857

    Article  PubMed  Google Scholar 

  • M Jalali-Heravi F Parastar (2000) J Chem Inf Comput Sci 40 147 Occurrence Handle10.1021/ci990314+ Occurrence Handle10661561

    Article  PubMed  Google Scholar 

  • L Douali D Villemin D Cherqaoui (2003) J Chem Inf Comput Sci 43 1200 Occurrence Handle10.1021/ci034047q Occurrence Handle12870912

    Article  PubMed  Google Scholar 

  • T Miyasaka H Tanaka RT Walker J Balzarini E De Clercq (1989) J Med Chem 32 2507 Occurrence Handle10.1021/jm00132a002 Occurrence Handle2479745

    Article  PubMed  Google Scholar 

  • H Tanaka M Baba H Hayakawa T Sakamaki T Miyasaka M Ubasawa H Takashima K Sekiya I Nitta S Shigeta RT Walker J Balzarin E De Clercq (1991) J Med Chem 34 349

    Google Scholar 

  • H Tanaka H Takashima M Ubasawa K Sekiya I Nitta M Baba S Shigeta RT Walker E De Clercq T Miyasaka (1992) J Med Chem 35 337

    Google Scholar 

  • H Tanaka H Takashima M Ubasawa K Sekiya N Inouye M Baba S Shigeta RT Walker E De Clercq T Miyasaka (1995) J Med Chem 38 2860

    Google Scholar 

  • Eberhart R, Kennedy J (1995) Proc of the 6th Int Symp On Micro Machine and Human Science. IEEE Service Center, Piscataway, NJ, pp 39–43

  • AR Cockshott BE Hartman (2001) Process Biochem 36 661 Occurrence Handle10.1016/S0032-9592(00)00261-2

    Article  Google Scholar 

  • CO Ourique EC Biscaia JC Pinto SuffixJr (2002) Comput Chem Eng 26 1783 Occurrence Handle10.1016/S0098-1354(02)00153-9

    Article  Google Scholar 

  • A Salman I Ahmad S Al-Madani (2002) Microprocess Microsy 26 363 Occurrence Handle10.1016/S0141-9331(02)00053-4

    Article  Google Scholar 

  • IC Trelea (2003) Inform Process Lett 85 317 Occurrence Handle10.1016/S0020-0190(02)00447-7 Occurrence HandleMR1956454

    Article  MathSciNet  Google Scholar 

  • DK Agrafiotis W Cedeno (2002) J Med Chem 45 1098

    Google Scholar 

  • Q Shen J Jiang C Jiao G Shen R Yu (2004) Eur J Pharm Sci 22 145 Occurrence Handle10.1016/j.ejps.2004.03.002 Occurrence Handle15158899

    Article  PubMed  Google Scholar 

  • J Lü Q Shen J Jiang G Shen R Yu (2004) J Pharmaceut Biomed 35 679 Occurrence Handle10.1016/j.jpba.2004.02.026

    Article  Google Scholar 

  • CHQ Ding I Dubchak (2001) Bioinformatics 17 349 Occurrence Handle10.1093/bioinformatics/17.4.349 Occurrence Handle11301304

    Article  PubMed  Google Scholar 

  • R Karchin K Karplus D Haussler (2002) Bioinformatics 18 147 Occurrence Handle10.1093/bioinformatics/18.1.147 Occurrence Handle11836223

    Article  PubMed  Google Scholar 

  • CZ Cai WL Wang LZ Sun YZ Chen (2003) Math Biosci 185 111 Occurrence Handle10.1016/S0025-5564(03)00096-8 Occurrence Handle12941532

    Article  PubMed  Google Scholar 

  • M Song CM Breneman J Bi N Sukumar KP Bennett S Cramer N Tugeu (2002) J Chem Inf Comput Sci 42 1347 Occurrence Handle10.1021/ci025580t Occurrence Handle12444731

    Article  PubMed  Google Scholar 

  • L Li H Tang Z Wu J Gong M Gruidl J Zou M Tockman R Clark (2004) Artif Intell Med 32 71 Occurrence Handle10.1016/j.artmed.2004.03.006 Occurrence Handle15364092

    Article  PubMed  Google Scholar 

  • Vapnik V (1995) The Nature of Statistical Learning Theory. Springer Verlag, New York

  • Smola AJ, Scholkopf B (1998) A Tutorial on Support Vector Regression. NeuroCOLT Technical Report NC-TR-98-030. Royal Holloway College, University of London, UK

  • Vapnik V, Golowich SE, Smola A (1997) Support Vector Method for Function Approximation, Regression Estimation, and Signal Processing. In: Mozer M, Jordan M, Petsche T (eds) Advances in Neural Information Processing Systems 9. MIT Press, Cambridge, MA, pp 281–287

  • Drucker H, Burges CJC, Kaufman L, Smola A, Vapnik V (1997) Support Vector Regression Machines. In: Mozer M, Jordan M, Petsche T (eds) Advances in Neural Information Processing Systems 9. MIT Press, Cambridge, MA, pp 155–161

  • Scholkopf B, Bartlett PL, Smola A, Williamson R (1999) Shrinking the Tube: A new Support Vector Regression Algorithm. In: Mozer M, Jordan M, Petsche T (eds) Advances in Neural Information Processing Systems 11. MIT Press, Cambridge, MA, pp 330–336

  • Eberhart RC, Shi Y (2001) Proc IEEE Cong Evol Comp. IEEE Service Center, Piscataway, NJ, pp 81–86

  • Kennedy J, Eberhart R (1995) Proc IEEE Int Conf Neural Networks. Piscataway, NJ, pp 1942–1948

  • Shi Y, Eberhart RC (1999) Proc IEEE Cong Evol Comp. IEEE Service Center, Piscataway, NJ, pp 1945–1950

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Correspondence to Luckhana Lawtrakul or Chakguy Prakasvudhisarn.

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Lawtrakul, L., Prakasvudhisarn, C. Correlation Studies of HEPT Derivatives Using Swarm Intelligence and Support Vector Machines. Monatsh. Chem. 136, 1681–1691 (2005). https://doi.org/10.1007/s00706-005-0357-0

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  • DOI: https://doi.org/10.1007/s00706-005-0357-0

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