Skip to main content
SpringerLink
Log in

Complete genome sequence of triticum yellow stripe virus, a new polerovirus infecting wheat (triticum aestivum) in China

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

Wheat plants with yellow stripes on their leaves were collected in the city of Tai’an (Shandong province, China). High-throughput sequencing analysis of the collected plants showed that they were coinfected with wheat leaf yellowing-associated virus (WLYaV) and an unidentified polerovirus. The genome of the unidentified virus, tentatively named “triticum yellow stripe virus” (TriYSV), comprises 5,595 nucleotides and contains seven open reading frames (ORFs), with a typical polerovirus genome structure. Analysis by sequence alignment showed that TriYSV had the highest sequence similarity to wheat yellow dwarf virus (WYDV, a tentative member of the genus Polerovirus), with 87.3% nucleotide sequence identity over the whole genome. Except for P3a and the coat protein (CP), all of the proteins encoded by TriYSV showed < 90% amino acid identity to those of other poleroviruses. Phylogenetic analysis based on RNA-dependent RNA polymerase and CP amino acid sequences and complete genome nucleotide sequences showed that the poleroviruses WYDV, cereal yellow dwarf virus RPS (CYDV-RPS), CYDV-RPV, and barley yellow dwarf virus GPV are the most closely related to TriYSV. Thus, TriYSV is proposed to be a new member of the genus Polerovirus.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

Data availability

The sequences described in this study have been deposited in the GenBank database under accession numbers OM829808-OM829809.

References

  1. Bortolamiol D, Pazhouhandeh M, Marrocco K, Genschik P, Ziegler-Graff V (2007) The Polerovirus F box protein P0 targets ARGONAUTE1 to suppress RNA silencing. Curr biology: CB 17:1615–1621

    Article  CAS  Google Scholar 

  2. Brault V, Périgon S, Reinbold C, Erdinger M, Scheidecker D, Herrbach E, Richards K, Ziegler-Graff V (2005) The polerovirus minor capsid protein determines vector specificity and intestinal tropism in the aphid. J Virol 79:9685–9693

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. FAO F (2018) Food Outlook: biannual report on global food markets. FAO Rome

  4. Fu S, Zhang T, He M, Sun B, Zhou X, Wu J (2021) Molecular characterization of a novel wheat-infecting virus of the family Betaflexiviridae. Arch Virol 166:2875–2879

    Article  CAS  PubMed  Google Scholar 

  5. Guo Lm, He J, Li J, Chen J-p, Zhang H-m (2019) Chinese wheat mosaic virus: A long-term threat to wheat in China. J Integr Agric 18:821–829

    Article  Google Scholar 

  6. Guo M, Yuan X, Wu N, Liu Y, Wang X (2022) Complete genome sequence of a novel wheat-infecting polerovirus associated with yellowing dwarf disease in China. Arch Virol 167:983–987

    Article  CAS  PubMed  Google Scholar 

  7. Han C, Li D, Xing Y, Zhu K, Tian Z, Cai Z, Yu J, Liu Y (2000) Wheat yellow mosaic virus Widely Occurring in Wheat (Triticum aestivum) in China. Plant Dis 84:627–630

    Article  PubMed  Google Scholar 

  8. Knierim D, Tsai WS, Deng TC, Green SK, Kenyon L (2013) Full-length genome sequences of four polerovirus isolates infecting cucurbits in Taiwan determined from total RNA extracted from field samples. Plant patholgy 62:633–641

    Article  CAS  Google Scholar 

  9. Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol 33:1870–1874

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Liu Y, Du Z, Wang H, Zhang S, Cao M, Wang X (2018) Identification and Characterization of Wheat Yellow Striate Virus, a Novel Leafhopper-Transmitted Nucleorhabdovirus Infecting Wheat. Front Microbiol 9:468

    Article  PubMed  PubMed Central  Google Scholar 

  11. Liu Y, Khine MO, Zhang P, Fu Y, Wang X (2020) Incidence and Distribution of Insect-Transmitted Cereal Viruses in Wheat in China from 2007 to 2019. Plant Dis 104:1407–1414

    Article  CAS  PubMed  Google Scholar 

  12. Miller WA, Giedroc DP (2010) Ribosomal Frameshifting in Decoding Plant Viral RNAs. In: Atkins JF, Gesteland RF (eds) Recoding: Expansion of Decoding Rules Enriches Gene Expression. Springer New York, New York, NY, pp 193–220

    Chapter  Google Scholar 

  13. Rotenberg D, Bockus WW, Whitfield AE, Hervey K, Baker KD, Ou Z, Laney AG, De Wolf ED, Appel JA (2016) Occurrence of Viruses and Associated Grain Yields of Paired Symptomatic and Nonsymptomatic Tillers in Kansas Winter Wheat Fields. Phytopathology 106:202–210

    Article  PubMed  Google Scholar 

  14. Sõmera M, Fargette D, Hébrard E, Sarmiento C, Ictv Report C (2021) ICTV Virus Taxonomy Profile: Solemoviridae 2021. J Gen Virol 102:001707

    Article  PubMed  PubMed Central  Google Scholar 

  15. Tan S-T, Liu F, Lv J, Liu Q-L, Luo H-M, Xu Y, Ma Y, Chen X-J, Lan P-X, Chen H-R, Cao M-J, Li F (2021) Identification of two novel poleroviruses and the occurrence of Tobacco bushy top disease causal agents in natural plants. Sci Rep 11:21045

    Article  PubMed  PubMed Central  Google Scholar 

  16. Zhang P, Liu Y, Liu W, Cao M, Massart S, Wang X (2017) Identification, Characterization and Full-Length Sequence Analysis of a Novel Polerovirus Associated with Wheat Leaf Yellowing Disease. Front Microbiol 8:1689

    Article  PubMed  PubMed Central  Google Scholar 

  17. Zhou Y, Chen Z, Cheng M, Chen J, Zhu T, Wang R, Liu Y, Qi P, Chen G, Jiang Q, Wei Y, Luo MC, Nevo E, Allaby RG, Liu D, Wang J, Dvorák J, Zheng Y (2018) Uncovering the dispersion history, adaptive evolution and selection of wheat in China. Plant Biotechnol J 16:280–291

    Article  CAS  PubMed  Google Scholar 

Download references

Funding

This work was financially supported by grants from the Transformation and Application Special Project in Agricultural Scientific and Technological Achievements of Anhui Province (grant number 2022ZH003), the Hefei Postdoctoral Research Activities Foundation, the Natural Science Foundation of Anhui Province (grant number 1908085QC107), and the Natural Science Foundation of Anhui Province (grant number 2008085MC74).

Author information

Author notes

  1. Dankan Yan and Kelei Han contributed equally to this work.

Authors and Affiliations

  1. Institute of Plant Protection and Agro-Products Safety, Anhui Academy of Agricultural Sciences, 230031, Hefei, Anhui, China

    Dankan Yan, Kelei Han, Ying Chen, Chao Ma, Shuzhen Hu, Wei Zhao & Fang Wang

Authors
  1. Dankan Yan
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Kelei Han
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Ying Chen
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Chao Ma
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Shuzhen Hu
    View author publications

    You can also search for this author in PubMed Google Scholar

  6. Wei Zhao
    View author publications

    You can also search for this author in PubMed Google Scholar

  7. Fang Wang
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding authors

Correspondence to Wei Zhao or Fang Wang.

Ethics declarations

Ethical approval

This study did not involve the use of any animal or human data or tissues, and therefore no ethical approval was required.

Conflict of interest

The authors declare that they have no competing interests.

Additional information

Communicated by Ralf Georg Dietzgen

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic Supplementary Material

Below is the link to the electronic supplementary material

Supplementary Material 1

Supplementary Table S1 Primers used for RT-PCR and RACE

Supplementary Material 2

Supplementary Material 3

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Yan, D., Han, K., Chen, Y. et al. Complete genome sequence of triticum yellow stripe virus, a new polerovirus infecting wheat (triticum aestivum) in China. Arch Virol 168, 146 (2023). https://doi.org/10.1007/s00705-023-05758-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s00705-023-05758-x

Search

Navigation