Skip to main content
Log in

Complete genome sequence of a novel mitovirus from the wheat stripe rust fungus Puccinia striiformis

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

Abstract

The complete genome of a novel mycovirus, Puccinia striiformis mitovirus 1 (PsMV1), derived from the wheat stripe rust fungus Puccinia striiformis strain SCSN-10, was sequenced and analyzed. The full-length cDNA sequence is 2496 bp in length with a predicted AU content of 57.65% in the genomic RNA. Sequence analysis indicated that a single large open reading frame (ORF) is present on the positive strand when the fungal mitochondrial genetic code is used. The single ORF encodes a putative RNA-dependent RNA polymerase of 743 amino acids with a molecular mass of 84.9 kDa that shares the closest similarity with the corresponding proteins of Cronartium ribicola mitovirus 5 and Helicobasidium mompa mitovirus 1-18 (34% and 35% aa sequence identity, respectively). Phylogenetic analysis further indicated that PsMV1 is a new member of the genus Mitovirus within the family Narnaviridae. This is the first report of the full-length nucleotide sequence of a novel mitovirus, PsMV1, from the causal agent of wheat stripe rust.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  1. Chen XM (2005) Epidemiology and control of stripe rust [Puccinia striiformis f. sp. tritici] on wheat. Can J Plant Pathol 27:314–337

    Article  Google Scholar 

  2. Wellings CR (2011) Global status of stripe rust: a review of historical and current threats. Euphytica 179:129–141

    Article  Google Scholar 

  3. Chen WQ, Wu LR, Liu TG, Xu SC, Jin SL, Peng YL, Wang BT (2009) Race dynamics, diversity, and virulence evolution in Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust in China from 2003 to 2007. Plant Dis 93:1093–1101

    Article  CAS  PubMed  Google Scholar 

  4. Ghabrial SA, Jiang DH, Nibert ML, Suzuki N (2015) 50-plus years of fungal viruses. Virology 479:356–368

    Article  CAS  PubMed  Google Scholar 

  5. Newton AC, Caten CE, Johnson R (1985) Variation for isozymes and double-stranded RNA among isolates of Puccinia striiformis and two other cereal rusts. Plant Pathol 34:235–247

    Article  CAS  Google Scholar 

  6. Link TI, Lang P, Scheffler BE, Duke MV, Graham MA, Cooper B et al (2014) The haustorial transcriptomes of Uromyces appendiculatus and Phakopsora pachyrhizi and their candidate effector families. Mol Plant Pathol 15:379–393

    Article  CAS  PubMed  Google Scholar 

  7. Cooper B, Campbell KB, Garrett WM (2016) Expression of a synthetic rust fungal virus cDNA in yeast. Arch Virol 161:111–123

    Article  CAS  PubMed  Google Scholar 

  8. Liu JJ, Chan D, Xiang Y, Williams H, Li XR, Sniezko RA, Sturrock RN (2016) Characterization of five novel mitoviruses in the white pine blister rust fungus Cronartium ribicola. Plos One 11(5):e0154267

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Zheng L, Lu X, Liang XF, Jiang SC, Zhao J, Zhan GM, Liu P, Wu JH, Kang ZS (2017) Molecular characterization of novel totivirus-like double-stranded RNA from Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. Front Microbiol 8:1960

    Article  PubMed  PubMed Central  Google Scholar 

  10. Zheng L, Zhang ML, Chen QG, Zhu MH, Zhou EX (2014) A novel mycovirus closely related to viruses in the genus Alphapartitivirus, confers hypovirulence in the phytopathogenic fungus Rhizoctonia solani. Virology 456:220–226

    Article  CAS  PubMed  Google Scholar 

  11. Hillman BI, Cai G (2013) The family Narnaviridae: simplest of RNA viruses. Adv Virus Res 86:149–176

    Article  PubMed  Google Scholar 

  12. Zhang T, Li W, Chen H, Yu H (2015) Full genome sequence of a putative novel mitovirus isolated from Rhizoctonia cerealis. Arch Virol 160:1815–1818

    Article  CAS  PubMed  Google Scholar 

  13. Cao LH, Xu SC, Chen WQ, Liu TG, Chen WQ (2008) Early molecular diagnosis and detection of Puccinia striiformis f. sp. tritici in China. Lett Appl Microbiol 46:501–506

    Article  CAS  Google Scholar 

  14. Xu ZY, Wu SS, Liu LJ, Cheng JS, Fu YP, Jiang DH, Xie JT (2015) A mitovirus related to plant mitochondrial gene confers hypovirulence on the phytopathogenic fungus Sclerotinia sclerotiorum. Virus Res 197:127–136

    Article  CAS  PubMed  Google Scholar 

  15. Komatsu K, Katayama Y, Omatsu T, Mizutani T, Fukuhara T, Kodama M, Arie T, Teraoka T, Moriyama H (2016) Genome sequence of a novel mitovirus identified in the phytopathogenic fungus Alternaria arborescens. Arch Virol 161:2627–2631

    Article  CAS  PubMed  Google Scholar 

  16. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Kondo H, Hisano S, Chiba S, Maruyama K, Andika IB, Toyoda K et al (2016) Sequence and phylogenetic analyses of novel totivirus-like double stranded RNAs from field-collected powdery mildew fungi. Virus Res 213:353–364

    Article  CAS  PubMed  Google Scholar 

  18. Chen Y, Shang HH, Yang HQ, Gao BD, Zhong J (2017) A mitovirus isolated from the phytopathogenic fungus Alternaria brassicicola. Arch Virol 162:2869–2874

    Article  CAS  PubMed  Google Scholar 

  19. King AM, Lefkowitz E, Adams MJ, Carstens EB (eds) (2011) Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Elsevier, Amsterdam

    Google Scholar 

Download references

Funding

This study was financially supported by the National Natural Science Foundation of China (31701732).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Zhensheng Kang.

Ethics declarations

Conflict of interest

All authors declare no conflict of interest.

Ethical approval

This article does not contain any studies with animals or human participants performed by any of the authors.

Additional information

Handling Editor: Robert H.A. Coutts.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zheng, L., Zhao, J., Liang, X. et al. Complete genome sequence of a novel mitovirus from the wheat stripe rust fungus Puccinia striiformis. Arch Virol 164, 897–901 (2019). https://doi.org/10.1007/s00705-018-04134-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-018-04134-4

Navigation