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Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan

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Abstract

The complete genome of a severe isolate of Cucumber vein yellowing virus (CVYV) from Jordan was sequenced. Comparison with the genome of a Spanish CVYV isolate inducing very mild symptoms in cucumber cultivars revealed a nucleotide identity of 94% for the complete genome and an amino acid identity of 96% for the coding region. Comparison of synonymous and non-synonymous substitutions suggested a negative selection at amino acid and nucleotide levels with different degrees depending on the different coding regions. Finally, specific amino acid changes in the zinc finger domain of P1b and in the P1-P3 proteolytic site were found which could be involved in the virulence of CVYV.

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Acknowledgments

We thank Juan José López Moya for providing the Jordanian isolate of CVYV.

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Authors and Affiliations

  1. Departamento de Patología Vegetal, Instituto de Investigación y Tecnología Agroalimentaria (IRTA), Ctra. Cabrils Km.2, 08348, Cabrils, Barcelona, Spain

    L. Galipienso & J. Aramburu

  2. Instituto Valenciano de Investigaciones Agrarias (IVIA), 46113, Moncada, Valencia, Spain

    L. Rubio

  3. Instituto Andaluz de Investigación y Formación Agraria y Pesquera (IFAPA), Centro de Churriana, Cortijo de la Cruz s/n, 29140, Churriana, Málaga, Spain

    L. Velasco

  4. Instituto Andaluz de Investigación y Formación Agraria y Pesquera (IFAPA), Centro La Mojonera, Camino de San Nicolás nº 1, 04745, La Mojonera, Almería, Spain

    D. Janssen

Authors
  1. L. Galipienso
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  2. L. Rubio
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  3. J. Aramburu
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  4. L. Velasco
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  5. D. Janssen
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Corresponding author

Correspondence to L. Galipienso.

Additional information

The GenBank accession number of the complete genome of CVYV isolate from Jordan reported in this paper is JF460793.

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Galipienso, L., Rubio, L., Aramburu, J. et al. Complete nucleotide sequence of a severe isolate of cucumber vein yellowing virus from Jordan. Arch Virol 157, 1189–1192 (2012). https://doi.org/10.1007/s00705-012-1264-4

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  • DOI: https://doi.org/10.1007/s00705-012-1264-4

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