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Quantifying consistent individual differences in habitat selection

Abstract

Habitat selection is a fundamental behaviour that links individuals to the resources required for survival and reproduction. Although natural selection acts on an individual’s phenotype, research on habitat selection often pools inter-individual patterns to provide inferences on the population scale. Here, we expanded a traditional approach of quantifying habitat selection at the individual level to explore the potential for consistent individual differences of habitat selection. We used random coefficients in resource selection functions (RSFs) and repeatability estimates to test for variability in habitat selection. We applied our method to a detailed dataset of GPS relocations of brown bears (Ursus arctos) taken over a period of 6 years, and assessed whether they displayed repeatable individual differences in habitat selection toward two habitat types: bogs and recent timber-harvest cut blocks. In our analyses, we controlled for the availability of habitat, i.e. the functional response in habitat selection. Repeatability estimates of habitat selection toward bogs and cut blocks were 0.304 and 0.420, respectively. Therefore, 30.4 and 42.0 % of the population-scale habitat selection variability for bogs and cut blocks, respectively, was due to differences among individuals, suggesting that consistent individual variation in habitat selection exists in brown bears. Using simulations, we posit that repeatability values of habitat selection are not related to the value and significance of β estimates in RSFs. Although individual differences in habitat selection could be the results of non-exclusive factors, our results illustrate the evolutionary potential of habitat selection.

Introduction

Understanding factors that shape animals’ habitat selection is a fundamental ecological challenge (Morris 2011), because habitat selection links individuals to the resources required for survival and reproduction. Throughout their lives, individuals are constantly tasked to choose sets of resources (e.g. forage, prey, refuges) distributed within habitats to maximise their fitness (McLoughlin et al. 2010). When individual differences in habitat selection covary with fitness (McLoughlin et al. 2006; Leclerc et al. 2014), this variation, if heritable, represents alternative tactics available to adaptive evolution, which may change in frequency within a population according to density- or frequency-dependent selective pressures (Fortin et al. 2008). So far, however, no approach is available to explore the potential for evolution to act on individual differences in habitat selection behaviour. The first step to tackle this question is to document whether consistent individual variation in habitat selection exists.

Individual differences in behaviour have been studied for several decades (Krebs 1970; Bell et al. 2009). Originally, behaviours were assumed to potentially be completely plastic (Sih et al. 2004). More recently, however, behaviours are viewed as correlated traits that can generate trade-offs (Sih et al. 2004). Behavioural ecologists typically refer to those consistent individual differences as personality traits (Réale et al. 2010; Wolf and Weissing 2012). The study of individual differences in behaviour is of growing interest, because several studies have shown that such differences can have important ecological and evolutionary implications (Réale et al. 2010; Sih et al. 2012; Wolf and Weissing 2012). For example, individual variation in behaviour plays an important role in population dynamics in western bluebirds (Sialia mexicana), where aggressiveness and dispersal varies among males (Duckworth 2006; Duckworth and Badyaev 2007). Aggressive males disperse farther and colonise new habitats, whereas less aggressive males disperse less and have higher reproductive success in older established populations (Duckworth 2008). Therefore, for a given population, aggressiveness declines through time as the population becomes older (Duckworth 2008). Consistent individual differences in behaviour also have evolutionary implications, as selective pressures can act upon those differences, because they affect survival and reproduction (see review Smith and Blumstein 2008). For example, in North American red squirrels (Tamiasciurus hudsonicus), differences in female aggressiveness were correlated to overwinter offspring survival (Boon et al. 2007). The direction and strength of the relationship between behavioural traits and fitness can also depend on the environment (Nussey et al. 2007; Boon et al. 2007), highlighting the importance of studying consistent individual variation in habitat selection, which has yet to be done.

Morris (2003) defines habitat selection as the process whereby individuals use, or occupy, a nonrandom set of available habitats. Habitat selection is a hierarchical process (Johnson 1980), through which an individual aims to reduce the influence of limiting factors (a factor limiting an individual’s fitness) (Rettie and Messier 2000; Leclerc et al. 2012). Consequently, habitat selection patterns may vary according to the spatial scale studied (Morris 1987; Meyer and Thuiller 2006). For example, at large spatial scales, yellow-headed blackbirds (Xanthocephalus xanthocephalus) place nests where food abundance is higher, but at a finer spatial scale they place nests where vegetation cover is greater (Orians and Wittenberger 1991). Therefore, careful attention to scale and limiting factors governing habitat selection are essential to accurately estimate biologically relevant behavioural patterns.

Patterns in habitat selection can also result from functional responses to habitat availability. Functional responses in habitat selection are defined as a change in the selection of a habitat type depending on its availability (Mysterud and Ims 1998). The study of functional responses can help our understanding of resource use trade-offs (Mabille et al. 2012), which in turn can influence fitness (Leclerc et al. 2014; Losier et al. 2015). Functional responses in habitat selection are often interpreted at the population level by looking at the habitat selection of individuals in different landscapes (e.g. Mabille et al. 2012). This usually occurs because one individual rarely exists in a variety of landscapes or in all landscapes available to the population during the study period (Fig. 1). Therefore, functional responses in habitat selection can be seen as a concept analogous to behavioural reaction norm (Fig. 1) and should be accounted for when evaluating consistent individual differences in habitat selection (Supplementary Material Fig. S1).

Fig. 1
figure 1

Similarities can be drawn between the behavioural reaction norm (a) and the functional response in habitat selection (b) concepts. Both evaluate how the behaviour of individuals changes along an environmental gradient. Reaction norms are often evaluated with smaller species in laboratories or in open-field or maze tests. However, functional responses in habitat selection are usually interpreted at the population level, as individuals rarely exist in all landscapes available to the population. Biased estimates of repeatability can be obtained if functional responses in habitat selection are not accounted for (Supplementary material, Fig. S1). Here, we assumed that if one individual would select habitat type “X” (environmental gradient) less strongly than the mean population response, it would do so along the entire environmental gradient. Note that different numbers refer to different individuals

This study has three main objectives. First, we extend a method that combines ubiquitous practices from behavioural ecology, namely repeatability analysis and resource selection functions (RSFs), to quantify consistent individual differences in habitat selection. Second, we apply this method to a detailed behavioural dataset of GPS-collared brown bears (Ursus arctos) and assess whether individual differences in habitat selection are detectable. We focused our analyses on two habitat types, bogs and recent timber-harvest cut blocks (hereafter, cut blocks). We used bogs and cut blocks because they are the most abundant anthropogenically undisturbed and disturbed habitat types, respectively, in the study area and because they are avoided and selected for, respectively, at the population scale (Moe et al. 2007; Martin et al. 2010). Finally, using simulations, we explored the relationship between the repeatability in habitat selection across years and the strength at which a habitat type is selected or avoided at the population level. Ultimately, we argue that individual differences in habitat selection should be common in nature, given the evolutionary implications of resource choice strategies (see Fortin et al. 2008 for an example).

Materials and methods

The study area was located in south-central Sweden (61°N, 15°E) and was composed of bogs, lakes, and intensively managed coniferous forest stands of variable ages. The dominant tree species were Norway spruce Picea abies, Scots pine Pinus sylvestris, and birch Betula spp. Elevations ranged between 150 and 1000 m asl. Gravel roads (0.7 km/km2) were more abundant than paved roads (0.14 km/km2). See Martin et al. (2010) for further information about the study area.

We captured brown bears from a helicopter (2007–2012) using a remote drug delivery system (Dan-Inject, Børkop, Denmark). We extracted a vestigial first premolar for age determination from each individual not captured as a yearling with its mother (Matson 1993). We equipped bears with GPS collars (GPS Plus; Vectronic Aerospace, Berlin, Germany) programmed to relocate a bear every 30 min. See Fahlman et al. (2011) for details on capture and handling. All bears captured were part of the Scandinavian Brown Bear Research Project, and all captures and handling were approved by the appropriate authority and ethical committee (Djuretiska nämden i Uppsala, Sweden).

Spatial analysis

The GPS location fix success rate was >94 %. We screened the relocation data and removed GPS fixes with dilution of precision values >5 to increase spatial accuracy. Removed GPS locations were not biased with respect to habitat type (P > 0.22) compared to GPS locations retained in our analyses. Preliminary analyses showed consistent results when working with 30 min, 1, 2, or 4 h locations intervals (data not shown). Therefore, we used the complete dataset, i.e. 30 min location intervals. We used GPS locations from 21 August to 20 September for males and lone females. We chose to use this time period, during which the bears are foraging on berries, to reduce the influence of seasonality on behaviour. Hereafter, the set of locations of one bear from 21 August to 20 September on a given year will be referred as bear-year.

For every bear-year, we selected the same number of random locations as GPS locations. Random locations were distributed within each bear-year’s annual home range (3rd order of selection; sensu Johnson 1980). We defined home ranges as 100 % minimum convex polygons (Mohr 1947). To consider the influence of the surrounding environment on habitat selection, we extracted covariates within a circular buffer with a 182-m radius (which corresponds to the mean distance between 2 GPS relocations) centred on each GPS and random location. Covariates were landscape characteristics known or expected to influence the probability of occurrence of bears, based on previous research (Moe et al. 2007; Martin et al. 2010; Steyaert et al. 2013) and were derived from Swedish Corine Land Cover (25 × 25 m) and a Digital Elevation Model (50 × 50 m) from National Land Survey of Sweden (licence i2012/901, www.lantmateriet.se). Covariates extracted from each buffer were the  % coniferous stands (tree height >5 m and canopy cover of conifers >70 %),  % cut blocks (tree height <2 m),  % water,  % bogs (bogs with shrub and tree cover <30 %),  % mixed-deciduous stands (tree height >5 m and canopy cover of deciduous trees >30 %),  % young forested stands (tree height 2–5 m), road length, mean elevation, and the coefficient of variation of elevation. We conducted all spatial analyses using ArcGIS 10.0 (ESRI, Redlands, CA, USA) and the Geospatial Modelling Environment 0.7.2 (Spatial Ecology).

Statistical analysis

We used RSFs (Manly et al. 2002) to assess habitat selection by conducting logistic regression that compared habitat characteristics at bear GPS locations (coded 1) to those at random locations (coded 0). Habitat type covariates (β coefficients from the logistic regression) can be interpreted as selected or avoided if β > 0 or β < 0, respectively, and significantly different from 0. If β = 0, or is not significantly different from 0, then the habitat type is used in proportion to its availability. More recently, RSFs often include individual as a random effect on the intercept and also include random coefficient (Gillies et al. 2006; Hebblewhite and Merrill 2008). Random intercepts account for differences in sample size among individuals, whereas random coefficients account for differences in selection among individuals (Gillies et al. 2006; Hebblewhite and Merrill 2008). To our knowledge, no study has used random coefficients in RSFs to test if habitat selection constitutes behaviour with consistent individual differences upon which natural selection could act. Prior to statistical analyses, we assessed multicolinearity between covariates using the variance inflation factor (VIF <5; Graham 2003), and, based on this, removed the  % coniferous stands from our analyses which occupied on average >56 % of buffer zones. We performed model selection (Burnham and Anderson 2002) and evaluated different candidate models defined a priori using the Akaike Information Criterion (AIC).

We first evaluated two different RSF models with differently structured random effects to ascertain whether variance in habitat selection occurred among individuals. In model A, we nested bear-year within BearID and included no random coefficient. This model provided information about habitat selection at the population level and accounted for differences in number of GPS fixes per individual (Gillies et al. 2006). In model B, we also considered differences in selection among individuals by adding  % bog as a random coefficient to model A (Gillies et al. 2006). We added  % bog to test for individual variation in habitat selection toward an abundant natural habitat type, however, any other habitat covariate of interest could have been used instead (for cut blocks habitat type, see supplementary material). If supported by AIC, model B would permit us to extract variances in habitat selection of bogs (random coefficient) within (bear-year) and among (BearID) individuals to calculate repeatability:

$$ r = \frac{{s_{\text{among}}^{2} }}{{s_{\text{among}}^{2} + s_{\text{within}}^{2} }} $$
(1)

where \( r \) is repeatability, \( s_{\text{among}}^{ 2} \) is the variance among individuals (BearID), and \( s_{\text{within}}^{2} \) is the variance within individuals (bear-year). High repeatability (r = 1) will be found if \( s_{\text{among}}^{2} \) is high relative to \( s_{\text{within}}^{2} \), or, in other words, when individuals behave consistently through time (low \( s_{\text{within}}^{2} \)) and when individuals behave differently from each other (high \( s_{\text{among}}^{2} \)). No repeatability (r = 0) will be found when all individuals behave similarly as a homogenous group (low \( s_{\text{among}}^{2} \)), but the “group” behaves differently through time (high \( s_{\text{within}}^{2} \)).

Using the most parsimonious random structure, we evaluated 4 nested candidate models with different fixed effects. The ‘base’ model was composed of the functional response toward bogs only. Functional response was added by including an interaction term between the  % bog within the 182-m radius buffer and the  % bog within the home range. The ‘elevation’ model included the ‘base’ model, mean elevation, and the coefficient of variation of elevation. The ‘natural’ model included the ‘elevation’ model,  % water, and  % mixed-deciduous stand. The ‘full’ model included the ‘natural’ model,  % cut blocks,  % young forested stand, and road length.

Subsequently, we estimated fixed and random coefficients from the most parsimonious model. We extracted variance of bog selection among bears (BearID) and within bears (bear-year) and calculated repeatability according to Eq. 1. To facilitate model convergence, all numeric covariates were scaled (mean = 0, variance = 1) before inclusion. We conducted all statistical analyses using the lme4 package (Bates et al. 2015) in R 3.0.1 (R Core Team 2013).

Simulations

We performed simulations to ensure that repeatability estimates calculated from the random effects of RSF were not functions of the value of β estimates or their significance. Three scenarios were tested (Supplementary material, Appendix S1). In each scenario, we created a population of five individuals living in similar landscapes and monitored for 3 years. In the first scenario, parts of the population always selected habitat type X, whereas others always avoided it with varying intensities among years. In the second scenario, all individuals in the population avoided, used in proportion to availability, and selected habitat type X in the first, second, and third year, respectively, but we did not allow variation among individuals in a given year. In the third scenario, all individuals in the population selected habitat type X with varying intensity between years, but we did not allow variation among bears in a given year. We evaluated repeatability estimates for each scenario (Supplementary material, Appendix S1) using the lme4 package (Bates et al. 2015) in R 3.0.1 (R Core Team 2013).

Results

Between 2007 and 2012, we followed 31 GPS collared bears, 12 males and 19 lone females, aged 2–20 years-old. The bears were tracked \( \bar{x} \)  = 2.81 years (range: 2–5 years) for a total of 87 bear-years, which included a total of 72,744 GPS locations (mean = 836 GPS locations per bear-year). Annual home range availability of bogs differed between bears and bear-year (\( \bar{x} \)  = 13 %, range = 2–27 % of annual home ranges).

We evaluated two random structures. Adding a random coefficient for  % bog in the RSF increased model support (Table 1), suggesting that differences existed in the selection of bogs between BearID and/or bear-year. For the selection of fixed effects, the ‘full’ model had the strongest support (Table 2). The fixed effect showed that, at the population level, bears selected for cut blocks, young forest, mixed-deciduous stands, and high coefficient of variation of elevation, but avoided high road density, water, and bogs (Table 3).

Table 1 Random structures tested to assess the repeatability of habitat selection of bogs by brown bears (Ursus arctos) in Sweden between 2007 and 2012
Table 2 Candidate models tested to assess repeatability of habitat selection of bogs by brown bears in Sweden between 2007 and 2012
Table 3 Coefficients (β) and 95 % confidence intervals of the fixed effect covariates of the most parsimonious model to assess the repeatability of bog habitat selection by brown bears in Sweden between 2007 and 2012

We estimated the repeatability of bog selection by extracting within (bear-year) and among (BearID) bear variances from the ‘full’ model. Variance of bog selection within (bear-year) and among (BearID) bears was 0.081 and 0.035, respectively. According to Eq. 1, repeatability of bog selection was 0.304, indicating that 30.4 % of the variance in habitat selection of bogs by bears was due to differences among individuals (Fig. 2). Habitat selection of cut blocks showed similar results (Supplementary material, Tables S1–S3). Variation in selection of cut blocks within (bear-year) and among (BearID) bears was 0.034 and 0.025, respectively, resulting in a repeatability of 0.420 (Fig. 2).

Fig. 2
figure 2

Estimates of coefficients for the selection of bogs (a) and cut blocks (b) for each bear-year (n = 87) of brown bears (Ursus arctos) in south-central Sweden from 2007 to 2012. Bear-year is represented by a single dot, whereas stacked dots represent selection coefficients of a given individual (n = 31). Some bears consistently avoided bogs or selected cut blocks more strongly than others. The repeatability estimate of bog and cut blocks selection coefficients was 0.304 and 0.420, respectively, which indicates that individual variation in habitat selection exists and may allow adaptive evolution to occur in this brown bear population

The simulation results suggested that in scenario 1, habitat type X was neither selected nor avoided at the population level, but was highly repeatable at the individual level (>0.8; Table 4; Supplementary material, Appendix S1). Habitat type X from scenario 2 was also neither selected nor avoided at the population level, but was not repeatable (<0.001; Table 4; Supplementary material, Appendix S1). Finally, in scenario 3, habitat type X was selected at the population level but was not repeatable (<0.001; Table 4; Supplementary material, Appendix S1).

Table 4 Summary of results from simulations and GPS-collared bears that explored the relationship between the repeatability of habitat selection and the value and significance of β estimates in RSFs

Discussion

Although natural selection acts on individual phenotypes, most literature on habitat selection reports population-scale inferences. Here, we have extended a traditional method based on RSF to investigate habitat selection at the individual level and have shown that individual variation in habitat selection exists in our brown bear study population. By investigating habitat selection at the individual level, we found that individual differences in habitat selection existed, were repeatable, and revealed patterns in selection that were not apparent at the population level. Bears avoided bogs at the population level, but with varying intensity. Some bears avoided bogs more strongly than others. A similar pattern was also observed for cut blocks. Cut blocks were selected for at the population level, but consistent individual differences in their selection occurred among bears. Our simulations also suggested that repeatability estimates were not influenced by the pattern of habitat selection at the population level.

In our study, we have focused on individual variation in habitat selection toward habitat types that were selected and avoided at the population level. However, we expect that individual variation in habitat selection can also occur regarding habitat types that appear to be used in proportion to their availability at the population level, i.e. in habitat types with a non-significant β estimate in RSFs. For example, we should observe individual variation in habitat selection toward a ‘non-significant’ habitat type if individuals behave differently from one to another, but the mean population use is equivalent to the mean population availability (Table 4; see simulations in Supplementary material, Appendix S1). Furthermore, if a habitat type is selected or avoided at the population level, i.e. β estimate ≠ 0, this does not imply that selection for or avoidance of this habitat type will be repeatable at the individual level. For example, all individuals in a population could express the same behaviour (low among-individual variation relative to within-individual variation) of avoiding or selecting a habitat type, resulting in a low or zero repeatability (Table 4; see simulations in Supplementary material, Appendix S1). We therefore do not expect a relationship between the value and significance of β estimates in RSFs and their repeatability.

The biological significance of individual differences in habitat selection will be linked to the spatial scale at which a study is conducted. Here, we evaluated habitat selection at the third order of selection (Johnson 1980), where bears should be less influenced by conspecifics and selection should reflect their own trade-offs regarding resource use (see Steyaert et al. 2013 for the mating period). If we had evaluated habitat selection repeatability at the second order of selection, we might have evaluated the consistency of the social structure and intra-specific competition rather than resource use trade-offs (Dahle and Swenson 2003; Støen et al. 2005; Dahle et al. 2006). In addition to choosing the most biologically relevant spatial scale, careful attention must be paid to density-dependent habitat selection (van Beest et al. 2014). Based on Ideal Free Distribution theory, individuals should distribute themselves to reduce resource competition and maximise fitness (Fretwell and Lucas 1970). Favourable habitat types should be used less by individuals when density increases, leading to a generalisation in habitat selection (Fortin et al. 2008; van Beest et al. 2014). Therefore, observed habitat selection patterns and repeatability estimates can be functions of varying density over time (lower repeatability) or across the landscape (higher repeatability). We did not control for bear density, as we assumed that it was stable over the study area during the study period (6 years). Furthermore, bears typically show a despotic distribution (Elfström et al. 2014), and density should influence habitat selection of bears at the second, rather than the third, order of selection. Briefly, careful attention must be paid to density-dependent habitat selection and the spatial scale at which we evaluated habitat selection repeatability, which should vary depending on a species’ ecology, limiting factors, etc.

Consistent individual variation in behaviour, or animal personality, has been shown to occur across many species for a variety of behaviours (Bell et al. 2009). In a meta-analysis, the average repeatability across all behaviours was 0.37 (Bell et al. 2009), which is similar to the habitat selection repeatability estimates that we obtained. Traditional experiments of personality have consisted mainly of capturing individuals in the wild and quantifying their behaviours in laboratory or open field tests (Bell et al. 2009). Niemelä and Dingemanse (2014) argued that novel environments (e.g. in a laboratory) can elicit behavioural patterns that fail to match behaviours expressed in natural environments. By using remotely sensed data (i.e. GPS collars), we avoid this criticism, having measured behaviour directly in the wild. The advent of technologies, such as GPS telemetry (or camera traps, Passive Integrated Transponder networks, etc.), presents a plethora of opportunities for understanding the repeatability of a diverse range of animal behaviours, e.g. here with habitat selection (see also Ciuti et al. 2012; Kays et al. 2015; Wilmers et al. 2015). Coupling measurements coming from both traditional experiments and personality measures using GPS telemetry will provide new opportunities to assess whether behaviour measured in laboratory or open field tests is associated with behaviour in the wild.

Consistent individual differences in habitat selection may have important ecological and evolutionary implications. As the expression of personality traits can be environment-dependent (Nussey et al. 2007), we suggest that individual variation in habitat selection could have important cascading effects on other behavioural traits (Dubois and Giraldeau 2014). For example, individual variation in habitat selection might canalise individuals into different behavioural patterns. In return, those behavioural patterns might appear as personality traits that could be caused by individual variation in habitat selection. More research linking habitat selection and animal personality is needed to disentangle the causes and consequences of individual variation in habitat selection and its potential cascading effects on other behavioural traits.

Individual differences in habitat selection could be the results of many non-exclusive factors. As bears seek resources that are distributed into habitat types, differences in habitat selection pattern could be the result of different resource needs in relation to sex or age. Therefore, it might not be surprising that we observed high inter-annual variance (bear-year) in habitat selection, as bears are opportunistic omnivores and the distribution of resource availability can differ among years (Bojarska and Selva 2012). Another mechanism that could explain individual differences in habitat selection is natal habitat preference induction, i.e. when experience in a natal habitat increases the level of preference for that habitat later in life (Davis and Stamps 2004; Stamps et al. 2009). Similarly, Nielsen et al. (2013) suggested that habitat selection in brown bears is a behaviour learned from the mother. Finally, as repeatability estimates are considered to be the upper limit of heritability (Falconer and Mackay 1996), our results suggest that patterns of habitat selection may be, at least partly, heritable (Shafer et al. 2014). Thus, we speculate that if these individual differences in habitat selection have a genetic basis and are under selective pressure, we would expect evolutionary change in patterns of habitat selection, which may have important implications for adaptive potential and the maintenance of genetic variation in wild populations.

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Acknowledgments

We thank Pierre-Olivier Montiglio for statistical advices and one anonymous reviewer for constructive comments. ML was supported financially by NSERC, FQRNT, and NSTP. EVW was supported financially by an NSERC postdoctoral fellowship. FP was funded by NSERC discovery grant and by the Canada research Chair in Evolutionary Demography and Conservation. This is scientific publication No. 194 from the SBBRP, which was funded by the Swedish Environmental Protection Agency, the Norwegian Directorate for Nature Management, the Research Council of Norway, and the Austrian Science Fund. We acknowledge the support of the Center for Advanced Study in Oslo, Norway, that funded and hosted our research project “Climate effects on harvested large mammal populations” during the academic year of 2015–2016 and funding from the Polish–Norwegian Research Program operated by the National Center for Research and Development under the Norwegian Financial Mechanism 2009–2014 in the frame of Project Contract No POL-NOR/198352/85/2013.

Author contribution statement

ML and EVW developed the idea. All authors participated in the study design. ML carried out analyses. All authors wrote the manuscript and gave final approval for publication. AZ and JK participated in the coordination of the Scandinavian Brown Bear Research Project (SBBRP). JES coordinated the SBBRP.

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Correspondence to Andreas Zedrosser.

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Communicated by Ilpo Kojola.

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Leclerc, M., Vander Wal, E., Zedrosser, A. et al. Quantifying consistent individual differences in habitat selection. Oecologia 180, 697–705 (2016). https://doi.org/10.1007/s00442-015-3500-6

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Keywords

  • Functional response
  • Personality
  • Repeatability
  • Ursus arctos