Skip to main content

Advertisement

Log in

Molecular characterization of deletion breakpoints in adults with 22q11 deletion syndrome

  • Original Investigation
  • Published:
Human Genetics Aims and scope Submit manuscript

Abstract

22q11 Deletion syndrome (22q11DS) is a common microdeletion syndrome with variable expression, including congenital and later onset conditions such as schizophrenia. Most studies indicate that expression does not appear to be related to length of the deletion but there is limited information on the endpoints of even the common deletion breakpoint regions in adults. We used a real-time quantitative PCR (qPCR) approach to fine map 22q11.2 deletions in 44 adults with 22q11DS, 22 with schizophrenia (SZ; 12 M, 10 F; mean age 35.7 SD 8.0 years) and 22 with no history of psychosis (NP; 8 M, 14 F; mean age 27.1 SD 8.6 years). QPCR data were consistent with clinical FISH results using the TUPLE1 or N25 probes. Two subjects (one SZ, one NP) negative for clinical FISH had atypical 22q11.2 deletions confirmed by FISH using the RP11-138C22 probe. Most (n = 34; 18 SZ, 16 NP) subjects shared a common 3 Mb hemizygous 22q11.2 deletion. However, eight subjects showed breakpoint variability: a more telomeric proximal breakpoint (n = 2), or more centromeric (n = 3) or more telomeric distal breakpoint (n = 3). One NP subject had a proximal nested 1.4 Mb deletion. COMT and TBX1 were deleted in all 44 subjects, and PRODH in 40 subjects (19 SZ, 21 NP). The results delineate proximal and distal breakpoint variants in 22q11DS. Neither deletion extent nor PRODH haploinsufficiency appeared to explain the clinical expression of schizophrenia in the present study. Further studies are needed to elucidate the molecular basis of schizophrenia and clinical heterogeneity in 22q11DS.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Amati F, Conti E, Novelli A, Bengala M, Diglio MC, Marino B, Giannotti A, Gabrielli O, Novelli G, Dallapiccola B (1999) Atypical deletions suggest five 22q11.2 critical regions related to the DiGeorge/velo-cardio-facial syndrome. Eur J Hum Genet 7:903–909

    Article  PubMed  CAS  Google Scholar 

  • Babcock M, Pavlicek A, Spiteri E, Kashork CD, Ioshikhes I, Shaffer LG, Jurka J, Morrow BE (2003) Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolution. Genome Res 13:2519–2532

    Article  PubMed  CAS  Google Scholar 

  • Bartsch O, Nemeckova M, Kocarek E, Wagner A, Puchmajerova A, Poppe M, Ounap K, Goetz P (2003) DiGeorge/velocardiofacial syndrome: FISH studies of chromosomes 22q11 and 10p14, and clinical reports on the proximal 22q11 deletion. Am J Med Genet A 117:1–5

    Article  PubMed  Google Scholar 

  • Bassett AS, Chow EW, Husted J, Weksberg R, Caluseriu O, Webb GD, Gatzoulis MA (2005) Clinical features of 78 adults with 22q11 deletion syndrome. Am J Med Genet A 138:307–313

    PubMed  Google Scholar 

  • Beatty B, Mai S, Squire J (2002) FISH: a practical approach. Oxford University Press, Oxford, New York

    Google Scholar 

  • Carlson C, Sirotkin H, Pandita R, Goldberg R, McKie J, Wadey R, Patanjali SR, Weissman SM, Anyane-Yeboa K, Warburton D, Scambler P, Shprintzen R, Kucherlapati R, Morrow BE (1997) Molecular definition of 22q11 deletions in 151 velo-cardio-facial syndrome patients. Am J Hum Genet 61:620–629

    PubMed  CAS  Google Scholar 

  • Devriendt K, Fryns JP, Mortier G, van Thienen MN, Keymolen K (1998) The annual incidence of DiGeorge/velocardiofacial syndrome. J Med Genet 35:789–790

    PubMed  CAS  Google Scholar 

  • Driscoll DA, Salvin J, Sellinger B, Budarf ML, McDonald-McGinn DM, Zackai EH, Emanuel BS (1993) Prevalence of 22q11 microdeletions in DiGeorge and velocardiofacial syndromes: implications for genetic counseling and prenatal diagnosis. J Med Genet 30:813–817

    Article  PubMed  CAS  Google Scholar 

  • Guris DL, Duester G, Papaioannou VE, Imamoto A (2006) Dose–dependent interaction of Tbx1 and Crkl and locally aberrant RA signaling in a model of del22q11 syndrome. Dev Cell 10:81–92

    Article  PubMed  CAS  Google Scholar 

  • Jacquet H, Raux G, Thibaut F, Hecketsweiler B, Houy E, Demilly C, Haouzir S, Allio G, Fouldrin G, Drouin V, Bou J, Petit M, Campion D, Frebourg T (2002) PRODH mutations and hyperprolinemia in a subset of schizophrenic patients. Hum Mol Genet 11:2243–2249

    Article  PubMed  CAS  Google Scholar 

  • Karayiorgou M, Morris MA, Morrow B, Shprintzen RJ, Goldberg R, Borrow J, Gos A, Nestadt G, Wolyniec PS, Lasseter VK et al (1995) Schizophrenia susceptibility associated with interstitial deletions of chromosome 22q11. Proc Natl Acad Sci USA 92:7612–7616

    Article  PubMed  CAS  Google Scholar 

  • Karayiorgou M, Gogos JA, Galke BL, Jeffery JA, Nestadt G, Wolyniec PS, Antonarakis SE, Kazazian HH, Housman DE, Driscoll DA, Pulver AE (1996) Genotype and phenotype analysis at the 22q11 schizophrenia susceptibility locus. Cold Spring Harb Symp Quant Biol 61:835–843

    PubMed  CAS  Google Scholar 

  • Kurahashi H, Tsuda E, Kohama R, Nakayama T, Masuno M, Imaizumi K, Kamiya T, Sano T, Okada S, Nishisho I (1997) Another critical region for deletion of 22q11: a study of 100 patients. Am J Med Genet 72:180–185

    Article  PubMed  CAS  Google Scholar 

  • Levy A, Demczuk S, Aurias A, Depetris D, Mattei MG, Philip N (1995) Interstitial 22q11 microdeletion excluding the ADU breakpoint in a patient with DiGeorge syndrome. Hum Mol Genet 4:2417–2419

    Article  PubMed  CAS  Google Scholar 

  • Lindsay EA (2001) Chromosomal microdeletions: dissecting del22q11 syndrome. Nat Rev Genet 2:858–868

    Article  PubMed  CAS  Google Scholar 

  • Lindsay EA, Goldberg R, Jurecic V, Morrow B, Carlson C, Kucherlapati RS, Shprintzen RJ, Baldini A (1995) Velo-cardio-facial syndrome: frequency and extent of 22q11 deletions. Am J Med Genet 57:514–522

    Article  PubMed  CAS  Google Scholar 

  • Lu JH, Chung MY, Betau H, Chien HP, Lu JK (2001) Molecular characterization of tetralogy of fallot within Digeorge critical region of the chromosome 22. Pediatr Cardiol 22:279–284

    Article  PubMed  CAS  Google Scholar 

  • Matsuoka R, Kimura M, Scambler PJ, Morrow BE, Imamura S, Minoshima S, Shimizu N, Yamagishi H, Joh-o K, Watanabe S, Oyama K, Saji T, Ando M, Takao A, Momma K (1998) Molecular and clinical study of 183 patients with conotruncal anomaly face syndrome. Hum Genet 103:70–80

    Article  PubMed  CAS  Google Scholar 

  • McQuade L, Christodoulou J, Budarf M, Sachdev R, Wilson M, Emanuel B, Colley A (1999) Patient with a 22q11.2 deletion with no overlap of the minimal DiGeorge syndrome critical region (MDGCR). Am J Med Genet 86:27–33

    Article  PubMed  CAS  Google Scholar 

  • Murphy KC, Jones LA, Owen MJ (1999) High rates of schizophrenia in adults with velo-cardio-facial syndrome. Arch Gen Psychiatry 56:940–945

    Article  PubMed  CAS  Google Scholar 

  • Osoegawa K, Mammoser AG, Wu C, Frengen E, Zeng C, Catanese JJ, de Jong PJ (2001) A bacterial artificial chromosome library for sequencing the complete human genome. Genome Res 11:483–496

    Article  PubMed  CAS  Google Scholar 

  • Paylor R, Glaser B, Mupo A, Ataliotis P, Spencer C, Sobotka A, Sparks C, Choi CH, Oghalai J, Curran S, Murphy KC, Monks S, Williams N, O’Donovan MC, Owen MJ, Scambler PJ, Lindsay E (2006) Tbx1 haploinsufficiency is linked to behavioral disorders in mice and humans: implications for 22q11 deletion syndrome. Proc Natl Acad Sci USA 103:7729–7734

    Article  PubMed  CAS  Google Scholar 

  • Rauch A, Zink S, Zweier C, Thiel CT, Koch A, Rauch R, Lascorz J, Huffmeier U, Weyand M, Singer H, Hofbeck M (2005) Systematic assessment of atypical deletions reveals genotype-phenotype correlation in 22q11.2. J Med Genet 42:871–876

    Article  PubMed  CAS  Google Scholar 

  • Saitta SC, McGrath JM, Mensch H, Shaikh TH, Zackai EH, Emanuel BS (1999) A 22q11.2 deletion that excludes UFD1L and CDC45L in a patient with conotruncal and craniofacial defects. Am J Hum Genet 65:562–566

    Article  PubMed  CAS  Google Scholar 

  • Saitta SC, Harris SE, Gaeth AP, Driscoll DA, McDonald-McGinn DM, Maisenbacher MK, Yersak JM, Chakraborty PK, Hacker AM, Zackai EH, Ashley T, Emanuel BS (2004) Aberrant interchromosomal exchanges are the predominant cause of the 22q11.2 deletion. Hum Mol Genet 13:417–428

    Article  PubMed  CAS  Google Scholar 

  • Shaw CJ, Lupski JR (2005) Non-recurrent 17p11.2 deletions are generated by homologous and non-homologous mechanisms. Hum Genet 116:1–7

    Article  PubMed  CAS  Google Scholar 

  • Stock AD, Spallone PA, Dennis TR, Netski D, Morris CA, Mervis CB, Hobart HH (2003) Heat shock protein 27 gene: chromosomal and molecular location and relationship to Williams syndrome. Am J Med Genet A 120:320–325

    Article  PubMed  Google Scholar 

  • Urban AE, Korbel JO, Selzer R, Richmond T, Hacker A, Popescu GV, Cubells JF, Green R, Emanuel BS, Gerstein MB, Weissman SM, Snyder M (2006) High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays. Proc Natl Acad Sci USA 103:4534–4539

    Article  PubMed  CAS  Google Scholar 

  • Vittorini S, Sacchelli M, Iascone MR, Collavoli A, Storti S, Giusti A, Andreani G, Botto N, Biagini A, Clerico A (2001) Molecular characterization of chromosome 22 deletions by short tandem repeat polymorphism (STRP) in patients with conotruncal heart defects. Clin Chem Lab Med 39:1249–1258

    Article  PubMed  CAS  Google Scholar 

  • Weksberg R, Hughes S, Moldovan L, Bassett AS, Chow EW, Squire JA (2005) A method for accurate detection of genomic microdeletions using real-time quantitative PCR. BMC Genomics 6:180

    Article  PubMed  CAS  Google Scholar 

  • Yamagishi H, Srivastava D (2003) Unraveling the genetic and developmental mysteries of 22q11 deletion syndrome. Trends Mol Med 9:383–389

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This research was supported by grants from the W. Garfield Weston Foundation, Ontario Mental Health Foundation, Medical Research Council of Canada (MOP-38099), and by a Young Investigator Award (EWCC) and Distinguished Investigator Awards (ASB and RW) from the National Alliance for Research on Schizophrenia and Depression, and Canada Research Chair in Schizophrenia Genetics (ASB). We also thank the National Cancer Institute of Canada (NCIC) with funds from the Canadian Cancer Society (JS and JB) for support. The authors thank the patients and their families for their participation, and many colleagues for referring patients, including Drs. Gary Webb and Michael Gatzoulis and the staff at the Toronto Congenital Cardiac Centre for Adults. None of the authors have financial interests that might present a conflict of interest.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Rosanna Weksberg.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Weksberg, R., Stachon, A.C., Squire, J.A. et al. Molecular characterization of deletion breakpoints in adults with 22q11 deletion syndrome. Hum Genet 120, 837–845 (2007). https://doi.org/10.1007/s00439-006-0242-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00439-006-0242-x

Keywords

Navigation