Molecular Genetics and Genomics

, Volume 288, Issue 3–4, pp 77–87 | Cite as

miRNA–transcription factor interactions: a combinatorial regulation of gene expression

Review

Abstract

Developmental processes require a precise spatio-temporal regulation of gene expression wherein a diverse set of transcription factors control the signalling pathways. MicroRNAs (miRNAs), a class of small non-coding RNA molecules have recently drawn attention for their prominent role in development and disease. These tiny sequences are essential for regulation of processes, including cell signalling, cell development, cell death, cell proliferation, patterning and differentiation. The consequence of gene regulation by miRNAs is similar to that by transcription factors (TFs). A regulatory cascade essential for appropriate execution of several biological events is triggered through a combinatorial action of miRNAs and TFs. These two important regulators share similar regulatory logics and bring about a cooperative action in the gene regulatory network, dependent on the binding sites present on the target gene. The review addresses the biogenesis and nomenclature of miRNAs, outlines the mechanism of action and regulation of their expression, and focuses on the combinatorial action of miRNAs and TFs for the expression of genes in various regulatory cascades.

Keywords

miRNA Transcription factor Gene expression miRNA nomenclature Combinatorial regulation 

Abbreviations

CRM

Cis-regulatory modules

FFL

Feed-forward loop

HDAC

Histone-deacetylase

miRNA

MicroRNA

miRNPs

miRNA-containing ribonucleoprotein complexes

RISC

RNA-induced silencing complex

RNAi

RNA interference

siRNA

Small interfering RNA

TF

Transcription factor

TSS

Transcription start site

TUs

Transcription units

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© Springer-Verlag Berlin Heidelberg 2013

Authors and Affiliations

  • S. Arora
    • 1
  • R. Rana
    • 1
  • A. Chhabra
    • 1
  • A. Jaiswal
    • 1
  • V. Rani
    • 1
  1. 1.Department of BiotechnologyJaypee Institute of Information TechnologyNoidaIndia

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