Battelli G (2009) Echinococcosis: costs, losses and social consequences of a neglected zoonosis. Vet Res Commun 33(1):47–52. https://doi.org/10.1007/s11259-009-9247-y
Article
PubMed
Google Scholar
Bonelli P, Masu G, Dei Giudici S, Pintus D, Peruzzu A, Piseddu T, Santucciu C, Cossu A, Demurtas N, Masala, G (2018) Cystic echinococcosis in a domestic cat (Felis catus) in Italy. Parasite 25:25. https://doi.org/10.1051/parasite/2018027
Bonelli P, Dei Giudici S, Peruzzu A, Piseddu T, Santucciu C, Masu G, Mastrandrea S, Delogu ML, Masala G (2020) Genetic diversity of Echinococcus granulosus sensu stricto in Sardinia (Italy). Parasitol Int 77:102120. https://doi.org/10.1016/j.parint.2020.102120
CAS
Article
PubMed
Google Scholar
Boufana B, Lahmar S, Rebaï W, Ben Safta Z, Jebabli L, Ammar A, Kachti M, Aouadi S, Craig PS (2014) Genetic variability and haplotypes of Echinococcus isolates from Tunisia. Trans R Soc Trop Med Hyg 108(11):706–714. https://doi.org/10.1093/trstmh/tru138
CAS
Article
PubMed
Google Scholar
Boufana B, Saïd Y, Dhibi M, Craig PS, Lahmar S (2015a) Echinococcus granulosus sensu stricto (ss) from the critically endangered antelope Addax nasomaculatus in Tunisia. Acta Trop 152:112–115. https://doi.org/10.1016/j.actatropica.2015.08.015
Article
PubMed
Google Scholar
Boufana B, Lett W, Lahmar S, Griffiths A, Jenkins DJ, Buishi I, Engilez SA, Alrefadi MA, Eljaki AA, Elmestiri FM, Reyes MM, Ponting S, Al-Hindi A, Torgerson PR, Okamoto M, Craig PS (2015b) Canine echinococcosis: genetic diversity of Echinococcus granulosus sensu stricto (ss) from definitive hosts. J Helminth 89(6):689–698. https://doi.org/10.1017/S0022149X15000395
CAS
Article
PubMed
Google Scholar
Boufana B, San Lett W, Lahmar S, Buishi I, Bodell AJ, Varcasia A, Casulli A, Beeching NJ, Campbell F, McManus TM, D. P., Craig PS, (2015c) Echinococcus equinus and Echinococcus granulosus sensu stricto from the United Kingdom: genetic diversity and haplotypic variation. Int J Parasitol 45(2–3):161–166. https://doi.org/10.1016/j.ijpara.2014.10.005
Article
PubMed
Google Scholar
Bowles J, Blair D, McManus DP (1992) Genetic variants within the genus Echinococcus identified by mitochondrial DNA sequencing. Mol Biochem Parasitol 54(2):165–173. https://doi.org/10.1016/0166-6851(92)90109-W
CAS
Article
PubMed
Google Scholar
Budke CM, Deplazes P, Torgerson PR (2006) Global socioeconomic impact of cystic echinococcosis. Emerg Infect Dis 12(2):296. https://doi.org/10.3201/eid1202.050499
Article
PubMed
PubMed Central
Google Scholar
Busi M, Šnábel V, Varcasia A, Garippa G, Perrone V, De Liberato C, D’Amelio S (2007) Genetic variation within and between G1 and G3 genotypes of Echinococcus granulosus in Italy revealed by multilocus DNA sequencing. Vet Parasitol 150(1–2):75–83. https://doi.org/10.1016/j.vetpar.2007.09.003
CAS
Article
PubMed
Google Scholar
Capuano F, Rinaldi L, Maurelli MP, Perugini AG, Veneziano V, Garippa G, Genchi C, Musella V, Cringoli G (2006) Cystic echinococcosis in water buffaloes: epidemiological survey and molecular evidence of ovine (G1) and buffalo (G3) strains. Vet Parasitol 137(3–4):262–268. https://doi.org/10.1016/j.vetpar.2006.01.016
CAS
Article
PubMed
Google Scholar
Casulli A, Interisano M, Sreter T, Chitimia L, Kirkova Z, La Rosa G, Pozio E (2012) Genetic variability of Echinococcus granulosus sensu stricto in Europe inferred by mitochondrial DNA sequences. Infect Gen Evol 12(2):377–383. https://doi.org/10.1016/j.meegid.2011.12.014
CAS
Article
Google Scholar
Conchedda M, Antonelli A, Caddori A, Gabriele F (2010) A retrospective analysis of human cystic echinococcosis in Sardinia (Italy), an endemic Mediterranean region, from 2001 to 2005. Parasitol Int 59(3):454–459. https://doi.org/10.1016/j.parint.2010.06.008
Article
PubMed
Google Scholar
Deplazes P, Rinaldi L, Rojas CA, Torgerson PR, Harandi MF, Romig T, Antolova D, Schurer JM, Lahmar S, Cringoli G, Magambo J, Thompson RC, Jenkins EJ (2017) Global distribution of alveolar and cystic echinococcosis. Adv Parasitol 95:315–493. https://doi.org/10.1016/bs.apar.2016.11.001
CAS
Article
PubMed
Google Scholar
Eckert J, Deplazes P (2004) Biological, epidemiological, and clinical aspects of echinococcosis, a zoonosis of increasing concern. Clin Microbiol Rev 17(1):107–135. https://doi.org/10.1128/CMR.17.1.107-135.2004
Article
PubMed
PubMed Central
Google Scholar
Excoffier L, Lischer HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3):564–567. https://doi.org/10.1111/j.1755-0998.2010.02847.x
Article
PubMed
Google Scholar
Kinkar L, Laurimäe T, Simsek S, Balkaya I, Casulli A, Manfredi MT, Ponce-Gordo F, Varcasia A, Lavikainen A, Gonzalez LM, Rehbein S, van der Giessen J, Sprong H, Saarma U (2016) High-resolution phylogeography of zoonotic tapeworm Echinococcus granulosus sensu stricto genotype G1 with an emphasis on its distribution in Turkey, Italy and Spain. Parasitology 143:1790–1801. https://doi.org/10.1017/S0031182016001530
Article
PubMed
Google Scholar
Kinkar L, Laurimäe T, Sharbatkhori M, Mirhendi H, Kia EB, Ponce-Gordo F, Andresiuk V, Simsek S, Lavikainen A, Irshadullah M, Umhang G, Oudni-M’rad M, Acosta-Jamett G, Rehbein S, Saarma U (2017) New mitogenome and nuclear evidence on the phylogeny and taxonomy of the highly zoonotic tapeworm Echinococcus granulosus sensu stricto. Infect Genet Evol 52:52–58. https://doi.org/10.1016/j.meegid.2017.04.023
CAS
Article
PubMed
Google Scholar
Kinkar L, Laurimäe T, Balkaya I, Casulli A, Zait H, Irshadullah M, Sharbatkhori M, Mirhendi H, Rostami-Nejad M, Ponce-Gordo F, Rehbein S, Kia EB, Simsek S, Šnábel V, Umhang G, Varcasia A, Saarma U (2018a) Genetic diversity and phylogeography of the elusive, but epidemiologically important Echinococcus granulosus sensu stricto genotype G3. Parasitology 145(12):1613–1622. https://doi.org/10.1017/S0031182018000549
CAS
Article
PubMed
Google Scholar
Kinkar L, Laurimäe T, Acosta-Jamett G, Andresiuk V, Balkaya I, Casulli A, Gasser RB, González LM, Haag KL, Zait H, Irshadullah M, Jabbar A, Jenkins DJ, Manfredi MT, Mirhendi H, M’rad S, Rostami-Nejad M, Oudni-M’rad M, Pierangeli NB, Ponce-Gordo F, Rehbein S, Sharbatkhori M, Kia EB, Simsek S, Soriano SV, Sprong H, Šnábel V, Umhang G, Varcasia A, Saarma U (2018b) Distinguishing Echinococcus granulosus sensu stricto genotypes G1 and G3 with confidence: a practical guide. Infect Genet Evol 64:178–184. https://doi.org/10.1016/j.meegid.2018.06.026
Kinkar L, Laurimäe T, Acosta-Jamett G, Andresiuk V, Balkaya I, Casulli A, Gasser RB, van der Giessen J, Gonzalez LM, Haag KL, Zait H, Irshadullah M, Jabbar A, Jenkins DJ, Kia EB, Manfredi MT, Mirhendi H, M’rad S, Rostami Nejad M, Oudni-M’rad M, Pierangeli NB, Ponce-Gordo F, Rehbein S, Sharbatkhori M, Simsek S, Soriano SV, Sprong H, Šnabel V, Umhang G, Varcasia A, Saarma U (2018c) Global phylogeography and genetic diversity of the zoonotic tapeworm Echinococcus granulosus sensu stricto genotype G1. Int J Parasitol 48:729–742. https://doi.org/10.1016/j.ijpara.2018.03.006
Article
PubMed
Google Scholar
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35(6):1547–1549. https://doi.org/10.1093/molbev/msy096
CAS
Article
PubMed
PubMed Central
Google Scholar
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23(21):2947–2948. https://doi.org/10.1093/bioinformatics/btm404
CAS
Article
PubMed
Google Scholar
Laatamna AE, Ebi D, Brahimi K, Bediaf K, Wassermann M, Souttou K, Romig T (2019) Frequency and genetic diversity of Echinococcus granulosus sensu stricto in sheep and cattle from the steppe region of Djelfa. Algeria Parasitol Res 118(1):89–96. https://doi.org/10.1007/s00436-018-6118-x
Article
PubMed
Google Scholar
Laurimäe T, Kinkar L, Andresiuk V, Haag KL, Ponce-Gordo F, Acosta-Jamett G, Garate T, Gonzalez LM, Saarma U (2016) Genetic diversity and phylogeography of highly zoonotic Echinococcus granulosus genotype G1 in the Americas (Argentina, Brazil, Chile and Mexico) based on 8279 bp of mtDNA. Infect Genet Evol 45:290–296. https://doi.org/10.1016/j.meegid.2016.09.015
CAS
Article
PubMed
Google Scholar
Laurimäe T, Kinkar L, Moks E, Romig T, Omer RA, Casulli A, Umhang G, Bagrade G, Irshadullah M, Sharbatkhori M, Mirhendi H, Ponce-Gordo F, Soriano SV, Varcasia A, Rostami-Nejad M, Andresiuk V, Saarma U (2018) Molecular phylogeny based on six nuclear genes suggests that Echinococcus granulosus sensu lato genotypes G6/G7 and G8/G10 can be regarded as two distinct species. Parasitology 145:1929–1937. https://doi.org/10.1017/S0031182018000719
Article
PubMed
Google Scholar
Laurimäe T, Kinkar L, Varcasia A, Dessì G, Sgroi G, D’Alessio N, Veneziano V, Saarma U (2019) First detection of zoonotic tapeworm Echinococcus granulosus sensu lato genotype G7 in continental Italy. Parasitol Res 118(7):2193–2201. https://doi.org/10.1007/s00436-019-06346-2
Article
PubMed
Google Scholar
Leigh JW, Bryant D (2015) POPART: full-feature software for haplotype network construction. Methods Ecol Evol 6(9):1110–1116
Article
Google Scholar
Ma J, Wang H, Lin G, Craig PS, Ito A, Cai Z, Zhang T, Han X, Ma X, Zhang J, Liu Y, Zhao Y, Wang Y (2012) Molecular identification of Echinococcus species from eastern and southern Qinghai, China, based on the mitochondrial cox1 gene. Parasitol Res 111(1):179–184. https://doi.org/10.1007/s00436-012-2815-z
Article
PubMed
Google Scholar
Ma J, Wang H, Lin G, Zhao F, Li C, Zhang T, Ma X, Zhang Y, Hou Z, Cai H, Liu P, Wang Y (2015) Surveillance of Echinococcus isolates from Qinghai, China. Vet Parasit 207(1-2):44–48
Mehmood N, Muqaddas H, Arshad M, Ullah MI, Khan ZI (2020) Comprehensive study based on mtDNA signature (nad1) providing insights on Echinococcus granulosus s.s. genotypes from Pakistan and potential role of buffalo-dog cycle. Infect Genet Evol 81:104271. https://doi.org/10.1016/j.meegid.2020.104271
Muqaddas H, Mehmood N, Arshad M (2020) Genetic variability and diversity of Echinococcus granulosus sensu lato in human isolates of Pakistan based on cox1 mt-DNA sequences (366bp). Acta Trop 207:105470. https://doi.org/10.1016/j.actatropica.2020.105470
Nakao M, Sako Y, Yokoyama N, Fukunaga M, Ito A (2000) Mitochondrial genetic code in cestodes. Mol Biochem Parasitol 111(2):415–424. https://doi.org/10.1016/S0166-6851(00)00334-0
CAS
Article
PubMed
Google Scholar
Nakao M, Yokoyama N, Sako Y, Fukunaga M, Ito A (2002) The complete mitochondrial DNA sequence of the cestode Echinococcus multilocularis (Cyclophyllidea: Taeniidae). Mitochondrion 1(6):497–509. https://doi.org/10.1016/S1567-7249(02)00040-5
CAS
Article
PubMed
Google Scholar
Nakao M, Sako Y, Ito A (2003) The mitochondrial genome of the tapeworm Taenia solium: a finding of the abbreviated stop codon U. J Parasitol 89(3):633–635. https://doi.org/10.1645/0022-3395(2003)089[0633:TMGOTT]2.0.CO;2
CAS
Article
PubMed
Google Scholar
Nakao M, McManus DP, Schantz PM, Craig PS, Ito A (2007) A molecular phylogeny of the genus Echinococcus inferred from complete mitochondrial genomes. Parasitology 134(5):713. https://doi.org/10.1017/S0031182006001934
CAS
Article
PubMed
Google Scholar
Nakao M, Lavikainen A, Yanagida T, Ito A (2013) Phylogenetic systematics of the genus Echinococcus (Cestoda: Taeniidae). Int J Parasitol 43(12–13):1017–1029. https://doi.org/10.1016/j.ijpara.2013.06.002
CAS
Article
PubMed
Google Scholar
Nakao M, Lavikainen A, Hoberg EP (2015) Is Echinococcus intermedius a valid species? Trends Parasitol 31:342–343. https://doi.org/10.1016/j.pt.2015.04.012
Article
PubMed
Google Scholar
Paoletti B, Della Salda L, Di Cesare A, Iorio R, Vergara A, Fava C, Olivastri A, Dessì G, Scala A, Varcasia A (2019) Epidemiological survey on cystic echinococcosis in wild boar from Central Italy. Parasitol Res 118(1):43–46. https://doi.org/10.1007/s00436-018-6112-3
Article
PubMed
Google Scholar
Rojas CAA, Ebi D, Paredes R, Acosta-Jamett G, Urriola N, Roa JC, Manterola C, Cortes S, Romig T, Scheerlinck JP, Lightowlers MW (2017) High intraspecific variability of Echinococcus granulosus sensu stricto in Chile. Parasitol Int 66(2):112–115. https://doi.org/10.1016/j.parint.2016.12.001
Article
Google Scholar
Romig T, Ebi D, Wassermann M (2015) Taxonomy and molecular epidemiology of Echinococcus granulosus sensu lato. Vet Parasitol 213(3–4):76–84. https://doi.org/10.1016/j.vetpar.2015.07.035
CAS
Article
PubMed
Google Scholar
Rozas J, Ferrer-Mata A, Sánchez-DelBarrio JC, Guirao-Rico S, Librado P, Ramos-Onsins SE, Sánchez-Gracia A (2017) DnaSP 6: DNA sequence polymorphism analysis of large data sets. Mol Biol Evol 34(12):3299–3302. https://doi.org/10.1093/molbev/msx248
CAS
Article
PubMed
Google Scholar
Saarma U, Jõgisalu I, Moks E, Varcasia A, Lavikainen A, Oksanen A, Simsek S, Andresiuk V, Denegri G, González LM, Ferrer E, Gárate T, Rinaldi L, Maravilla P (2009) A novel phylogeny for the genus Echinococcus, based on nuclear data, challenges relationships based on mitochondrial evidence. Parasitology 136(3):317. https://doi.org/10.1017/S0031182008005453
CAS
Article
PubMed
Google Scholar
Scala A, Garippa G, Varcasia A, Tranquillo VM, Genchi C (2006) Cystic echinococcosis in slaughtered sheep in Sardinia (Italy). Vet Parasitol 135(1):33–38. https://doi.org/10.1016/j.vetpar.2005.08.006
CAS
Article
PubMed
Google Scholar
Sgroi G, Varcasia A, Dessi G, D’Alessio N, Tamponi C, Saarma U, Laurimäe T, Kinkar L, Santoro M, Caputo V, Sarnelli P, Fusco G, Varuzza P, Fioretti A, Scala A, Veneziano V (2019) Cystic echinococcosis in wild boars (Sus scrofa) from southern Italy: epidemiological survey and molecular characterization. Int J Parasitol Parasites Wildl 9:305–311. https://doi.org/10.1016/j.ijppaw.2019.04.013
Article
PubMed
PubMed Central
Google Scholar
Sharbatkhori M, Harandi MF, Mirhendi H, Hajialilo E (2011) Kia EB (2011) Sequence analysis of cox1 and nad1 genes in Echinococcus granulosus G3 genotype in camels (Camelus dromedarius) from central Iran. Parasitol Res 108:521–527. https://doi.org/10.1007/s00436-010-2092-7
Article
PubMed
Google Scholar
Sharma M, Sehgal R, Fomda BA, Malhotra A, Malla N (2013) Molecular characterization of Echinococcus granulosus cysts in north Indian patients: identification of G1, G3, G5 and G6 genotypes. PLoS Negl Trop Dis 7(6):e2262. https://doi.org/10.1371/journal.pntd.0002262
Article
PubMed
PubMed Central
Google Scholar
Šnábel V, Altintas N, D’amelio S, Nakao M, Romig T, Yolasigmaz A, Gunes K, Turk M, Busi M, Hüttner M, Ševcová D, Ito A, Altintas N, Dubinský P (2009) Cystic echinococcosis in Turkey: genetic variability and first record of the pig strain (G7) in the country. Parasitol Res 105(1):145. https://doi.org/10.1007/s00436-009-1376-2
Article
PubMed
Google Scholar
Thompson RCA (2017) Biology and systematics of Echinococcus. Adv Parasitology 95:65–109. https://doi.org/10.1016/bs.apar.2016.07.001
CAS
Article
Google Scholar
Tigre W, Deresa B, Haile A, Gabriël S, Victor B, Van Pelt J, Devleesschauwer B, Vercruysse J, Dorny P (2016) Molecular characterization of Echinococcus granulosus s.l. cysts from cattle, camels, goats and pigs in Ethiopia. Vet Parasitol 215:17–21. https://doi.org/10.1016/j.vetpar.2015.10.022
CAS
Article
PubMed
Google Scholar
Umhang G, Richomme C, Bastid V, Boucher JM, de Garam CP, Itié-Hafez S, Danan C, Boué F (2020) National survey and molecular diagnosis of Echinococcus granulosus sensu lato in livestock in France, 2012. Parasitology 147(6):667–672. https://doi.org/10.1017/S0031182020000190
Article
PubMed
Google Scholar
Varcasia A, Canu S, Lightowlers MW, Scala A, Garippa G (2006) Molecular characterization of Echinococcus granulosus strains in Sardinia. Parasitol Res 98(3):273–277. https://doi.org/10.1007/s00436-005-0059-x
CAS
Article
PubMed
Google Scholar
Varcasia A, Piseddu T, Pipia AP, Schianchi G, Marongiu A, Petruzzi V, Scala A, Garippa G (2008) Epidemiological and biomolecular updates on cystic echinococcosis in pigs and wild boars of Sardinia (Italy). Lucr Stiintifice Med Veterinara 41:385–387
Google Scholar
Varcasia A, Dessì G, Lattanzio S, Marongiu D, Cuccuru C, Carta S, Meloni MP, Tamponi C, Scala A (2020) Cystic echinococcosis in the endemic island of Sardinia (Italy): has something changed? Parasitol Res 119(7):2207–2215. https://doi.org/10.1007/s00436-020-06717-0
Article
PubMed
Google Scholar
Yanagida T, Mohammadzadeh T, Kamhawi S, Nakao M, Sadjjadi SM, Hijjawi N, Abdel-Hafez SK, Sako Y, Okamoto M, Ito A (2012) Genetic polymorphisms of Echinococcus granulosus sensu stricto in the Middle East. Parasitol Int 61(4):599–603. https://doi.org/10.1016/j.parint.2012.05.014
CAS
Article
PubMed
Google Scholar