Abstract
APOE allelic variation is critical in brain aging and Alzheimer’s disease (AD). The APOE2 allele associated with cognitive resilience and neuroprotection against AD remains understudied. We employed a multipronged approach to characterize the transition from middle to old age in mice with APOE2 allele, using behavioral assessments, image-derived morphometry and diffusion metrics, structural connectomics, and blood transcriptomics. We used sparse multiple canonical correlation analyses (SMCCA) for integrative modeling, and graph neural network predictions. Our results revealed brain sub-networks associated with biological traits, cognitive markers, and gene expression. The cingulate cortex emerged as a critical region, demonstrating age-associated atrophy and diffusion changes, with higher fractional anisotropy in males and middle-aged subjects. Somatosensory and olfactory regions were consistently highlighted, indicating age-related atrophy and sex differences. The hippocampus exhibited significant volumetric changes with age, with differences between males and females in CA3 and CA1 regions. SMCCA underscored changes in the cingulate cortex, somatosensory cortex, olfactory regions, and hippocampus in relation to cognition and blood-based gene expression. Our integrative modeling in aging APOE2 carriers revealed a central role for changes in gene pathways involved in localization and the negative regulation of cellular processes. Our results support an important role of the immune system and response to stress. This integrative approach offers novel insights into the complex interplay among brain connectivity, aging, and sex. Our study provides a foundation for understanding the impact of APOE2 allele on brain aging, the potential for detecting associated changes in blood markers, and revealing novel therapeutic intervention targets.
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Data availability
Code and data necessary to reproduce the original analyses are available from https://github.com/AD-Decode/APOE2_Mouse. The raw RNA-seq data are available from ENA database (Accession PRJEB59982).
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The authors are grateful to Dr. Nobuyo Maeda for the initial mouse donations, and to NIH and the Bass Connections program for supporting our research.
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This work was supported by National Institutes of Health (RF1 AG057895, R01 AG066184, U24 CA220245, RF1 AG070149, and P30 AG072958).
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Statistical analysis was conducted by HSM, AM, MS, DC, AB, MWL; computation by HSM, AM, MS, DC, AN, JAS, RJA, AMF; data acquisition by HSM, JTT, ZYH, AMF, JK, AB; writing and editing by HSM, AM, MWL, AB; supervision by AAK, MWL, AB; and conceptualization and funding acquisition by MWL, AB. All authors read and approved the final manuscript.
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Moon, H.S., Mahzarnia, A., Stout, J. et al. Multivariate investigation of aging in mouse models expressing the Alzheimer’s protective APOE2 allele: integrating cognitive metrics, brain imaging, and blood transcriptomics. Brain Struct Funct 229, 231–249 (2024). https://doi.org/10.1007/s00429-023-02731-x
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DOI: https://doi.org/10.1007/s00429-023-02731-x