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MiRNA expression in the eye

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Abstract

MiRNAs are a newly discovered class of small noncoding RNAs that regulate gene expression by translational repression and mRNA degradation. It has become evident that miRNAs are involved in many important biological processes, including tissue differentiation and development. The role of miRNAs in the eye is beginning to be explored following their recent detection by miRNA expression analyses. Many of the target genes for these ocular miRNAs remain undefined. This review summarizes the current information about ocular miRNA expression. Future research should focus on the function of ocular miRNAs in eye development.

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References

  • Arora A, McKay GJ, Simpson DA (2007) Prediction and verification of miRNA expression in human and rat retinas. Invest Ophthalmol Vis Sci 48:3962–3967

    Article  Google Scholar 

  • Bak M, Silahtaroglu A, Moller M, Christensen M, Rath MF et al (2008) MicroRNA expression in the adult mouse central nervous system. RNA 14:432–444

    Article  CAS  Google Scholar 

  • Bartel DP, Chen CZ (2004) Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs. Nat Rev Genet 5:396–400

    Article  CAS  Google Scholar 

  • Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S et al (2005) Identification of hundreds of conserved and nonconserved human microRNAs. Nat Genet 37:766–770

    Article  CAS  Google Scholar 

  • Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L et al (2006) Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. Genome Res 16:1289–1298

    Article  CAS  Google Scholar 

  • Del Rio-Tsonis K, Tsonis PA (2003) Eye regeneration at the molecular age. Dev Dyn 226:211–224

    Article  Google Scholar 

  • Deo M, Yu JY, Chung KH, Tippens M, Turner DL (2006) Detection of mammalian microRNA expression by in situ hybridization with RNA oligonucleotides. Dev Dyn 235:2538–2548

    Article  CAS  Google Scholar 

  • Frederikse PH, Donnelly R, Partyka LM (2006) miRNA and Dicer in the mammalian lens: expression of brain-specific miRNAs in the lens. Histochem Cell Biol 126:1–8

    Article  CAS  Google Scholar 

  • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP et al (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27:91–105

    Article  CAS  Google Scholar 

  • Karali M, Peluso I, Marigo V, Banfi S (2007) Identification and characterization of microRNAs expressed in the mouse eye. Invest Ophthalmol Vis Sci 48:509–515

    Article  Google Scholar 

  • Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J et al (2006a) Cloning and expression of new microRNAs from zebrafish. Nucleic Acids Res 34:2558–2569

    Article  CAS  Google Scholar 

  • Kloosterman WP, Wienholds E, de Bruijn E, Kauppinen S, Plasterk RH (2006b) In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes. Nat Methods 3:27–29

    Article  CAS  Google Scholar 

  • Kolb FA, Zhang H, Jaronczyk K, Tahbaz N, Hobman TC, Filipowicz W (2005) Human dicer: purification, properties, and interaction with PAZ PIWI domain proteins. Methods Enzymol 392:316–336

    Article  CAS  Google Scholar 

  • Lagos-Quintana M, Rauhut R, Meyer J, BorkhardtA TuschlT (2003) New microRNAs from mouse and human. RNA 9:175–179

    Article  CAS  Google Scholar 

  • Li X, Carthew RW (2005) A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye. Cell 123:1267–1277

    Article  CAS  Google Scholar 

  • Loscher CJ, Hokamp K, Kenna PK, Ivens AC, Humphries P et al (2007) Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa. Genome Biol 8:R248

    Article  Google Scholar 

  • Makarev E, Spence JR, Del Rio-Tsonis K, Tsonis PA (2006) Identification of microRNAs and other small RNAs from the adult newt eye. Mol Vis 12:1386–1391

    CAS  PubMed  Google Scholar 

  • Nuovo GJ (2008) In situ detection of precursor and mature microRNAs in paraffin embedded, formalin fixed tissues and cell preparations. Methods 44:39–46

    Article  CAS  Google Scholar 

  • Obernosterer G, Martinez J, Alenius M (2007) Locked nucleic acid-based in situ detection of microRNAs in mouse tissue sections. Nat Protoc 2:1508–1514

    Article  CAS  Google Scholar 

  • Pierce ML, Weston MD, Fritzsch B, Gabel HW, Ruvkun G et al (2008) MicroRNA-183 family conservation and ciliated neurosensory organ expression. Evol Dev 10:106–113

    Article  CAS  Google Scholar 

  • Pillai RS, Bhattacharyya SN, Filipowicz W (2007) Repression of protein synthesis by miRNAs: how many mechanisms? Trends Cell Biol 17:118–126

    Article  CAS  Google Scholar 

  • Rodriguez A, Vigorito E, Clare S, Warren MV, Couttet P et al (2007) Requirement of bic/microRNA-155 for normal immune function. Science 316:608–611

    Article  CAS  Google Scholar 

  • Ryan DG, Oliveira-Fernandes M, Lavker RM (2006) MicroRNAs of the mammalian eye display distinct and overlapping tissue specificity. Mol Vis 12:1175–1184

    CAS  PubMed  Google Scholar 

  • Schmittgen TD, Lee EJ, Jiang J, Sarkar A, Yang L et al (2008) Real-time PCR quantification of precursor and mature microRNA. Methods 44:31–38

    Article  CAS  Google Scholar 

  • Sempere LF, Freemantle S, Pitha-Rowe I, Moss E, Dmitrovsky E et al (2004) Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation. Genome Biol 5:R13

    Article  Google Scholar 

  • Stefani G, Slack FJ (2008) Small non-coding RNAs in animal development. Nat Rev Mol Cell Biol 9:219–230

    Article  CAS  Google Scholar 

  • Thai TH, Calado DP, Casola S, Ansel KM, Xiao C et al (2007) Regulation of the germinal center response by microRNA-155. Science 316:604–608

    Article  CAS  Google Scholar 

  • Tsonis PA (2006) How to build and rebuild a lens. J Anat 209:433–437

    Article  Google Scholar 

  • Tsonis PA, Call MK, Grogg MW, Sartor MA, Taylor RR et al (2007) MicroRNAs and regeneration: Let-7 members as potential regulators of dedifferentiation in lens and inner ear hair cell regeneration of the adult newt. Biochem Biophys Res Commun 362:940–945

    Article  CAS  Google Scholar 

  • Weston MD, Pierce ML, Rocha-Sanchez S, Beisel KW, Soukup GA (2006) MicroRNA gene expression in the mouse inner ear. Brain Res 1111:95–104

    Article  CAS  Google Scholar 

  • Wienholds E, Kloosterman MiskaE, Alvarez-Saavedra E, Berezikov E et al (2005) MicroRNA expression in zebrafish embryonic development. Science 309:310–311

    Article  CAS  Google Scholar 

  • Xiao C, Calado DP, Galler G, Thai TH, Patterson HC et al (2007) MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb. Cell 131:146–159

    Article  CAS  Google Scholar 

  • Xu S, Witmer PD, Lumayag S, Kovacs B, Valle D (2007) MicroRNA (miRNA) transcriptome of mouse retina and identification of a sensory organ-specific miRNA cluster. J Biol Chem 282:25053–25066

    Article  CAS  Google Scholar 

  • Yang M, Lee JE, Padgett RW, Edery I (2008) Circadian regulation of a limited set of conserved microRNAs in Drosophila. BMC Genomics 9:83

    Article  Google Scholar 

  • Zhao Y, Ransom JF, Li A, Vedantham V, von Drehle M et al (2007) Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1–2. Cell 129:303–317

    Article  CAS  Google Scholar 

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Correspondence to Kristen M. Huang.

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Huang, K.M., Dentchev, T. & Stambolian, D. MiRNA expression in the eye. Mamm Genome 19, 510–516 (2008). https://doi.org/10.1007/s00335-008-9127-8

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  • DOI: https://doi.org/10.1007/s00335-008-9127-8

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