Abstract
Polarized growth is required in eukaryotic cells for processes such as cell division, morphogenesis and motility, which involve conserved and interconnected signalling pathways controlling cell cycle progression, cytoskeleton reorganization and secretory pathway functioning. While many of the factors involved in polarized growth are known, it is not yet clear how they are coordinated both spatially and temporally. Several lines of evidence point to the important role of lipid flippases in polarized growth events. Lipid flippases, which mainly belong to the P4 subfamily of P-type ATPases, are active transporters that move different lipids to the cytosolic side of biological membranes at the expense of ATP. The involvement of the Saccharomyces cerevisiae plasma membrane P4 ATPases Dnf1p and Dnf2p in polarized growth and their activation by kinase phosphorylation were established some years ago. However, these two proteins do not seem to be responsible for the phosphatidylserine internalization required for early recruitment of proteins to the plasma membrane during yeast mating and budding. In a recent publication, we demonstrated that the Golgi-localized P4 ATPase Dnf3p has a preference for PS as a substrate, can reach the plasma membrane in a cell cycle-dependent manner, and is regulated by the same kinases that activate Dnf1p and Dnf2p. This finding solves a long-lasting enigma in the field of lipid flippases and suggests that tight and heavily coordinated spatiotemporal control of lipid translocation at the plasma membrane is important for proper polarized growth.
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References
Alder-Baerens N, Lisman Q, Luong L et al (2006) Loss of P4 ATPases Drs2p and Dnf3p disrupts aminophospholipid transport and asymmetry in yeast post-Golgi secretory vesicles. Mol Biol Cell 17:1632–1642. https://doi.org/10.1091/mbc.E05-10-0912
Asano S, Park JE, Yu LR et al (2006) Direct phosphorylation and activation of a Nim1-related kinase Gin4 by Elm1 in budding yeast. J Biol Chem 281:27090–27098. https://doi.org/10.1074/jbc.M601483200
Baldridge RD, Graham TR (2013) Two-gate mechanism for phospholipid selection and transport by type IV P-type ATPases. Proc Natl Acad Sci 110:E358–E367. https://doi.org/10.1073/pnas.1216948110
Balhadère PV, Talbot NJ (2001) PDE1 encodes a P-type ATPase involved in appressorium-mediated plant infection by the rice blast fungus Magnaporthe grisea. Plant Cell 13:1987–2004. https://doi.org/10.1105/TPC.010056
Barale S, McCusker D, Arkowitz RA (2004) The exchange factor Cdc24 is required for cell fusion during yeast mating. Eukaryot Cell 3:1049–1061. https://doi.org/10.1128/EC.3.4.1049-1061.2004
Bertin A, McMurray MA, Thai L et al (2010) Phosphatidylinositol-4,5-bisphosphate promotes budding yeast septinfilament assembly and organization. J Mol Biol 404:711–731. https://doi.org/10.1016/j.jmb.2010.10.002
Brand AC, Morrison E, Milne S et al (2014) Cdc42 GTPase dynamics control directional growth responses. Proc Natl Acad Sci U S A 111:811–816. https://doi.org/10.1073/pnas.1307264111
Butty AC, Perrinjaquet N, Petit A et al (2002) A positive feedback loop stabilizes the guanine-nucleotide exchange factor Cdc24 at sites of polarization. EMBO J 21:1565–1576. https://doi.org/10.1093/emboj/21.7.1565
Chantalat S, Park S-K, Hua ZL et al (2004) The Arf activator Gea2p and the P-type ATPase Drs2p interact at the golgi in Saccharomyces cerevisiae. J Cell Sci 117:711–722. https://doi.org/10.1242/Jcs.00896
Chen RE, Thorner J (2007) Function and regulation in MAPK signaling pathways: lessons learned from the yeast Saccharomyces cerevisiae. Biochim Biophys Acta 1773:1311–1340. https://doi.org/10.1016/j.bbamcr.2007.05.003
Costanzo M, Baryshnikova A, Bellay J et al (2010) The genetic landscape of a cell. Science 327:425–431. https://doi.org/10.1126/science.1180823
Costanzo M, VanderSluis B, Koch EN et al (2016) A global genetic interaction network maps a wiring diagram of cellular function. Science 353:aaf1420. https://doi.org/10.1126/science.aaf1420
Das A, Slaughter BD, Unruh JR et al (2012) Flippase-mediated phospholipid asymmetry promotes fast Cdc42 recycling in dynamic maintenance of cell polarity. Nat Cell Biol 14:304–310. https://doi.org/10.1038/ncb2444
Emoto K, Umeda M (2000) An essential role for a membrane lipid in cytokinesis: regulation of contractile ring disassembly by redistribution of phosphatidylethanolamine. J Cell Biol 149:1215–1224. https://doi.org/10.1083/jcb.149.6.1215
Emoto K, Kobayashi T, Yamaji A et al (1996) Redistribution of phosphatidylethanolamine at the cleavage furrow of dividing cells during cytokinesis. Proc Natl Acad Sci U S A 93:12867–12872. https://doi.org/10.1073/pnas.93.23.12867
Etienne-Manneville S (2004) Cdc42 - the centre of polarity. J Cell Sci 117:1291–1300. https://doi.org/10.1242/jcs.01115
Fairn GD, Hermansson M, Somerharju P, Grinstein S (2011) Phosphatidylserine is polarized and required for proper Cdc42 localization and for development of cell polarity. Nat Cell Biol 13:1424–1430. https://doi.org/10.1038/ncb2351
Frøsig MM, Costa SR, Liesche J et al (2020) Pseudohyphal growth in Saccharomyces cerevisiae involves protein kinase-regulated lipid flippases. J Cell Sci 133:jcs235994. https://doi.org/10.1242/jcs.235994
Gall WE, Geething NC, Hua ZL et al (2002) Drs2p-dependent formation of exocytic clathrin-coated vesicles in vivo. Curr Biol 12:1623–1627. https://doi.org/10.1016/S0960-9822(02)01148-X
Gancedo JM (2001) Control of pseudohyphae formation in Saccharomyces cerevisiae. FEMS Microbiol Rev 25:107–123. https://doi.org/10.1016/S0168-6445(00)00056-5
Garrenton LS, Stefan CJ, McMurray MA et al (2010) Pheromone-induced anisotropy in yeast plasma membrane phosphatidylinositol-4,5-bisphosphate distribution is required for MAPK signaling. Proc Natl Acad Sci 107:11805–11810. https://doi.org/10.1073/pnas.1005817107
Gilbert MJ, Thornton CR, Wakley GE, Talbot NJ (2006) A P-type ATPase required for rice blast disease and induction of host resistance. Nature 440:535–539. https://doi.org/10.1038/nature04567
Gulli MP, Jaquenoud M, Shimada Y et al (2000) Phosphorylation of the Cdc42 exchange factor Cdc24 by the PAK-like kinase Cla4 may regulate polarized growth in yeast. Mol Cell 6:1155–1167. https://doi.org/10.1016/S1097-2765(00)00113-1
Hachiro T, Yamamoto T, Nakano K, Tanaka K (2013) Phospholipid flippases Lem3p-Dnf1p and Lem3p-Dnf2p are involved in the sorting of the tryptophan permease Tat2p in yeast. J Biol Chem 288:3594–3608. https://doi.org/10.1074/jbc.M112.416263
Han BK, Bogomolnaya LM, Totten JM et al (2005) Bem1p, a scaffold signaling protein, mediates cyclin-dependent control of vacuolar homeostasis in Saccharomyces cerevisiae. Genes Dev 19:2606–2618. https://doi.org/10.1101/gad.1361505
Heinrich M, Köhler T, Mösch HU (2007) Role of Cdc42-Cla4 interaction in the pheromone response of Saccharomyces cerevisiae. Eukaryot Cell 6:317–327. https://doi.org/10.1128/EC.00102-06
Hua ZL, Graham TR (2003) Requirement for Neo1p in retrograde transport from the Golgi complex to the endoplasmic reticulum. Mol Biol Cell 14:4971–4983. https://doi.org/10.1091/mbc.E03-07-0463
Hua Z, Fatheddin P, Graham TR (2002) An essential subfamily of Drs2p-related P-Type ATPases is required for protein trafficking between Golgi complex and endosomal/vacuolar system. Mol Biol Cell 13:3162–3177. https://doi.org/10.1091/mbc.E02-03-0172
Iwamoto K, Kobayashi S, Fukuda R et al (2004) Local exposure of phosphatidylethanolamine on the yeast plasma membrane is implicated in cell polarity. Genes Cells 9:891–903. https://doi.org/10.1111/j.1365-2443.2004.00782.x
Kato U, Emoto K, Fredriksson C et al (2002) A novel membrane protein, Ros3p, is required for phospholipid translocation across the plasma membrane in Saccharomyces cerevisiae. J Biol Chem 277:37855–37862. https://doi.org/10.1074/jbc.M205564200
Kay JG, Fairn GD (2019) Distribution, dynamics and functional roles of phosphatidylserine within the cell. Cell Commun Signal 17:126. https://doi.org/10.1186/s12964-019-0438-z
Lorenz MC, Cutler NS, Heitman J (2000) Characterization of alcohol-induced filamentous growth in Saccharomyces cerevisiae. Mol Biol Cell 11:183–199. https://doi.org/10.1091/mbc.11.1.183
Martin SG, Arkowitz RA (2014) Cell polarization in budding and fission yeasts. FEMS Microbiol Rev 38:228–253. https://doi.org/10.1111/1574-6976.12055
Meca J, Massoni-Laporte A, Martinez D et al (2019) Avidity-driven polarity establishment via multivalent lipid–GTPase module interactions. EMBO J 38:e99652. https://doi.org/10.15252/embj.201899652
Merlini L, Dudin O, Martin SG (2013) Mate and fuse: how yeast cells do it. Open Biol 3:130008. https://doi.org/10.1098/rsob.130008
Miller KE, Kang PJ, Park H-O (2020) Regulation of Cdc42 for polarized growth in budding yeast. Microb Cell 7:175–189. https://doi.org/10.15698/mic2020.07.722
Molina M, Cid VJ, Martín H (2010) Fine regulation of Saccharomyces cerevisiae MAPK pathways by post-translational modifications. Yeast 27:503–511. https://doi.org/10.1002/yea.1791
Moravcevic K, Mendrola JM, Schmitz KR et al (2010) Kinase associated-1 domains drive MARK/PAR1 kinases to membrane targets by binding acidic phospholipids. Cell 143:966–977. https://doi.org/10.1016/j.cell.2010.11.028
Mortensen EM, McDonald H, Yates J, Kellogg DR (2002) Cell cycle-dependent assembly of a Gin4-septin complex. Mol Biol Cell 13:2091–2105. https://doi.org/10.1091/mbc.01-10-0500
Mukherjee D, Sen A, Boettner DR et al (2013) Bem3, a Cdc42 GTPase-activating protein, traffics to an intracellular compartment and recruits the secretory Rab GTPase Sec4 to endomembranes. J Cell Sci 126:4560–4571. https://doi.org/10.1242/jcs.117663
Nakano K, Yamamoto T, Kishimoto T et al (2008) Protein kinases Fpk1p and Fpk2p are novel regulators of phospholipid asymmetry. Mol Biol Cell 19:1783–1797. https://doi.org/10.1091/mbc.E07-07-0646
Natarajan P, Liu K, Patil DV et al (2009) Regulation of a Golgi flippase by phosphoinositides and an ArfGEF. Nat Cell Biol 11:1421–1426. https://doi.org/10.1038/ncb1989
Noack LC, Jaillais Y (2020) Functions of anionic lipids in plants. Annu Rev Plant Biol 71:71–102. https://doi.org/10.1146/annurev-arplant-081519-035910
Palmgren MG, Nissen P (2011) P-Type ATPases. Annu Rev Biophys 40:243–266. https://doi.org/10.1146/annurev.biophys.093008.131331
Palmgren M, Østerberg JT, Nintemann SJ et al (2019) Evolution and a revised nomenclature of P4 ATPases, a eukaryotic family of lipid flippases. Biochim Biophys Acta Biomembr 1861:1135–1151. https://doi.org/10.1016/j.bbamem.2019.02.006
Platre MP, Bayle V, Armengot L et al (2019) Developmental control of plant Rho GTPase nano-organization by the lipid phosphatidylserine. Science 364:57–62. https://doi.org/10.1126/science.aav9959
Pomorski T, Menon AK (2006) Lipid flippases and their biological functions. Cell Mol Life Sci 63:2908–2921. https://doi.org/10.1007/s00018-006-6167-7
Pomorski T, Lombardi R, Riezman H et al (2003) Drs2p-related P-type ATPases Dnf1p and Dnf2p are required for phospholipid translocation across the yeast plasma membrane and serve a role in endocytosis. Mol Biol Cell 14:1240–1254. https://doi.org/10.1091/mbc.e02-08-0501
Prezant TR, Chaltraw WE, Fischel-Ghodsian N (1996) Identification of an overexpressed yeast gene which prevents aminoglycoside toxicity. Microbiology 142:3407–3414. https://doi.org/10.1099/13500872-142-12-3407
Riekhof WR, Voelker DR (2006) Uptake and utilization of lyso-phosphatidylethanolamine by Saccharomyces cerevisiae. J Biol Chem 281:36588–36596. https://doi.org/10.1074/jbc.M608851200
Riekhof WR, Wu J, Gijon MA et al (2007) Lysophosphatidylcholine metabolism in Saccharomyces cerevisiae: the role of P-Type ATPases in transport and a broad specificity acyltransferase in acylation. J Biol Chem 282:36853–36861. https://doi.org/10.1074/jbc.M706718200
Roberts CJ (2000) Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles. Science 287:873–880. https://doi.org/10.1126/science.287.5454.873
Roelants FM, Baltz AG, Trott AE et al (2010) A protein kinase network regulates the function of aminophospholipid flippases. Proc Natl Acad Sci 107:34–39. https://doi.org/10.1073/pnas.0912497106
Roelants FM, Breslow DK, Muir A et al (2011) Protein kinase Ypk1 phosphorylates regulatory proteins Orm1 and Orm2 to control sphingolipid homeostasis in Saccharomyces cerevisiae. Proc Natl Acad Sci 108:19222–19227. https://doi.org/10.1073/pnas.1116948108
Roelants FM, Su BM, von Wulffen J et al (2015) Protein kinase Gin4 negatively regulates flippase function and controls plasma membrane asymmetry. J Cell Biol 208:299–311. https://doi.org/10.1083/jcb.201410076
Roland BP, Naito T, Best JT et al (2019) Yeast and human P4-ATPases transport glycosphingolipids using conserved structural motifs. J Biol Chem 294:1794–1806. https://doi.org/10.1074/jbc.RA118.005876
Saito K, Fujimura-Kamada K, Hanamatsu H et al (2007) Transbilayer phospholipid flipping regulates Cdc42p signaling during polarized cell growth via Rga GTPase-activating proteins. Dev Cell 13:743–751. https://doi.org/10.1016/j.devcel.2007.09.014
Sartorel E, Barrey E, Lau RK, Thorner J (2015) Plasma membrane aminoglycerolipid flippase function is required for signaling competence in the yeast mating pheromone response pathway. Mol Biol Cell 26:134–150. https://doi.org/10.1091/mbc.E14-07-1193
Sartorel E, Ünlü C, Jose M et al (2018) Phosphatidylserine and GTPase activation control Cdc42 nanoclustering to counter dissipative diffusion. Mol Biol Cell 29:1299–1310. https://doi.org/10.1091/mbc.E18-01-0051
Schultzhaus Z, Yan H, Shaw BD (2015) Aspergillus nidulans flippase DnfA is cargo of the endocytic collar and plays complementary roles in growth and phosphatidylserine asymmetry with another flippase, DnfB. Mol Microbiol 97:18–32. https://doi.org/10.1111/mmi.13019
Schultzhaus Z, Cunningham GA, Mouriño-Pérez RR, Shaw BD (2019) The phospholipid flippase DnfD localizes to late Golgi and is involved in asexual differentiation in Aspergillus nidulans. Mycologia 111:13–25. https://doi.org/10.1080/00275514.2018.1543927
Shimada Y, Gulli MP, Peter M (2000) Nuclear sequestration of the exchange factor Cdc24 by Far1 regulates cell polarity during yeast mating. Nat Cell Biol 2:117–124. https://doi.org/10.1038/35000073
Sloat BF, Adams A, Pringle JR (1981) Roles of the CDC24 gene product in cellular morphogenesis during the Saccharomyces cerevisiae cell cycle. J Cell Biol 89:395–405. https://doi.org/10.1083/jcb.89.3.395
Smith GR, Givan SA, Cullen P, Sprague GF (2002) GTPase-activating proteins for Cdc42. Eukaryot Cell 1:469–480. https://doi.org/10.1128/EC.1.3.469-480.2002
Smith SE, Rubinstein B, Mendes Pinto I et al (2013) Independence of symmetry breaking on Bem1-mediated autocatalytic activation of Cdc42. J Cell Biol 202:1091–1106. https://doi.org/10.1083/jcb.201304180
Stevens HC, Malone L, Nichols JW (2008) The putative aminophospholipid translocases, DNF1 and DNF2, are not required for 7-Nitrobenz-2-oxa-1,3-diazol-4-yl-phosphatidylserine flip across the plasma membrane of Saccharomyces cerevisiae. J Biol Chem 283:35060–35069. https://doi.org/10.1074/jbc.M802379200
Sun Y, Taniguchi R, Tanoue D et al (2000) Sli2 (Ypk1), a homologue of mammalian protein kinase SGK, is a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. Mol Cell Biol 20:4411–4419. https://doi.org/10.1128/MCB.20.12.4411-4419.2000
Takar M, Wu Y, Graham TR (2016) The essential Neo1 protein from budding yeast plays a role in establishing aminophospholipid asymmetry of the plasma membrane. J Biol Chem 291:15727–15739. https://doi.org/10.1074/jbc.M115.686253
Tonikian R, Xin X, Toret CP et al (2009) Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. PLoS Biol 7:e1000218. https://doi.org/10.1371/journal.pbio.1000218
Tsai P-C, Hsu J-W, Liu Y-W et al (2013) Arl1p regulates spatial membrane organization at the trans-Golgi network through interaction with Arf-GEF Gea2p and flippase Drs2p. Proc Natl Acad Sci 110:E668–E677. https://doi.org/10.1073/pnas.1221484110
Wicky S, Schwarz H, Singer-Krüger B (2004) Molecular interactions of yeast Neo1p, an essential member of the Drs2 family of aminophospholipid translocases, and its role in membrane trafficking within the endomembrane system. Mol Cell Biol 24:7402–7418. https://doi.org/10.1128/Mcb.24.17.7402-7418.2004
Wu Y, Takar M, Cuentas-Condori AA, Graham TR (2016) Neo1 and phosphatidylethanolamine contribute to vacuole membrane fusion in Saccharomyces cerevisiae. Cell Logist 6:e1228791. https://doi.org/10.1080/21592799.2016.1228791
Menon AK (2007) A flip-flop switch in polarity signaling. Dev Cell 13:607–608. https://doi.org/10.1016/j.devcel.2007.10.008
Zhao ZS, Leung T, Manser E, Lim L (1995) Pheromone signalling in Saccharomyces cerevisiae requires the small GTP-binding protein Cdc42p and its activator CDC24. Mol Cell Biol 15:5246–5257. https://doi.org/10.1128/mcb.15.10.5246
Zhou XM, Graham TR (2009) Reconstitution of phospholipid translocase activity with purified Drs2p, a type-IV P-type ATPase from budding yeast. Proc Natl Acad Sci 106:16586–16591. https://doi.org/10.1073/pnas.0904293106
Zhou Y, Yang Y, Niu Y et al (2020) The tip-localized phosphatidylserine established by Arabidopsis ALA3 is crucial for Rab GTPase-mediated vesicle trafficking and pollen tube growth. Plant Cell 32:3170–3187. https://doi.org/10.1105/tpc.19.00844
Acknowledgements
The author would like to thank the Novo Nordisk Foundation (NovoCrops; project number NNF19OC0056580) and the Villum Foundation (LIFER, project number 13234) for their support. Special thanks go to present and former members of the Biomembranes and Lipid flippases group, to Prof. Michael Palmgren and Prof. Anja Fuglsang for mentorship and support along the years, and to Prof. Thomas Pomorski for fruitful collaboration.
Funding
Work in the author’s group is supported by the Novo Nordisk Foundation (NovoCrops; Project Number NNF19OC0056580).
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López-Marqués, R.L. Lipid flippases in polarized growth. Curr Genet 67, 255–262 (2021). https://doi.org/10.1007/s00294-020-01145-0
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DOI: https://doi.org/10.1007/s00294-020-01145-0