Skip to main content

Advertisement

Log in

Characterization of a Rolling-Circle Replication Plasmid pLR1 from Lactobacillus plantarum LR1

  • Published:
Current Microbiology Aims and scope Submit manuscript

Abstract

A cryptic plasmid from Lactobacillus plantarum LR1, designated pLR1, was sequenced and characterized. It consisted of a 2066-bp circular molecule with a G + C content of 52.7%. The plasmid pLR1 was predicted to contain five putative ORFs, in which ORF1 shared 93% and 92% identity with Rep proteins of pLP1 and pC30il, members of rolling-circle replication (RCR) pC194 family. Detection of single-stranded DNA (ssDNA) intermediates by Southern hybridization and mung bean nuclease treatment confirmed that pLR1 replicated via the RCR mechanism. Accumulation of ssDNA in rifampicin-treated strains implied that the host-coded RNA polymerase was involved in the conversion of ssDNA to double-stranded DNA (dsDNA). Furthermore, the copy number of pLR1 was estimated to be 36 in each cell by real-time polymerase chain reaction.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  1. Alpert C-A, Crutz-Le Coq A-M, Malleret C, Zagorec M (2003) Characterization of a theta-type plasmid from Lactobacillus sakei: a potential basis for low-copy-number vectors in Lactobacilli. Appl Environ Microbiol 69(9):5574–5584

    Article  PubMed  CAS  Google Scholar 

  2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410

    PubMed  CAS  Google Scholar 

  3. Bouia A, Bringel F, Frey L, Kammerer B, Belarbi A, Guyonvarch A, Hubert JC (1989) Structural organization of pLP1, a cryptic plasmid from Lactobacillus plantarum CCM 1904. Plasmid 22(3):185–192

    Article  PubMed  CAS  Google Scholar 

  4. Buckenhüskes HJ (1993) Selection criteria for lactic acid bacteria to be used as starter cultures for various food commodities. FEMS Microbiol Rev 12:253–272

    Article  Google Scholar 

  5. Daming R, Yinyu W, Zilai W, Jun C, Hekui L, Jingye Z (2003) Complete DNA sequence and analysis of two cryptic plasmids isolated from Lactobacillus plantarum. Plasmid 50:70–73

    Article  PubMed  CAS  Google Scholar 

  6. Danielsen M (2002) Characterization of the tetracycline resistance plasmid pMD5057 from Lactobacillus plantarum 5057 reveals a composite structure. Plasmid 48:98–103

    Article  PubMed  CAS  Google Scholar 

  7. de las Rivas B, Marcobal A, Munoz R (2004) Complete nucleotide sequence and structural organization of pPB1, a small Lactobacillus plantarum cryptic plasmid that originated by modular exchange. Plasmid 52:203–211

    Article  CAS  Google Scholar 

  8. del Solar G, Giraldo R, Ruiz-Echevarria MJ, Espinosa M, Diaz-Orejas R (1998) Replication and control of circular bacterial plasmids. Microbiol Mol Biol Rev 62:434–464

    PubMed  CAS  Google Scholar 

  9. Eguchi T, Doi K, Nishiyama K, Ohmomo S, Ogata S (2000) Characterization of a phage resistance plasmid, pLKS, of silage-making Lactobacillus plantarum NGRI0101. Bioscibio Biotechnol Biochem 64:751–756

    Article  CAS  Google Scholar 

  10. Ilyina TV, Koonin EV (1992) Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eukaryotes and archaebacteria. Nucleic Acids Res 20:3279–3285

    Article  PubMed  CAS  Google Scholar 

  11. Khan SA (1997) Rolling-circle replication of bacterial plasmids. Microbiol Mol Biol Rev 61(4):442–455

    PubMed  CAS  Google Scholar 

  12. Khan SA (2005) Plasmid rolling-circle replication: highlights of two decades of research. Plasmid 53:126–136

    Article  PubMed  CAS  Google Scholar 

  13. Lee CL, Ow SSW, Oh SKW (2006) Quantitative real-time polymerase chain reaction for determination of plasmid copy number in bacteria. J Microbiol Meth 65:258–267

    Article  CAS  Google Scholar 

  14. Leenhouts KJ, Tolner B, Bron S, Kok J, Venema G, Seegers JF (1991) Nucleotide sequence and characterization of the broad-hoserange lactococcal plasmid pWVO1. Plasmid 26:55–66

    Article  PubMed  CAS  Google Scholar 

  15. Marchler BA, Anderson JB, Cherukuri PF et al (2005) CDD: a conserved domain database for protein classification. Nucleic Acids Res 33:D192–D196

    Article  PubMed  Google Scholar 

  16. O’Sulivan DJ, Klaenhammer TR (1993) Rapid Mini-Prep isolation of high-quality plasmid DNA from Lactococcus and Lactobacillus spp. Appl Environ Microbiol 59(8):2730–2733

    Google Scholar 

  17. Park WJ, Lee KH, Lee JM, Lee HJ, Kim JH, Lee JH, Chang HC, Chung DK (2004) Characterization of pC7 from Lactobacillus paraplantarum C7 derived from Kimchi and development of lactic acid bacteria Escherichia coli shuttle vector. Plasmid 52(2):84–88

    Article  PubMed  CAS  Google Scholar 

  18. Rogosa M, Mitchell JA, Wiseman RF (1951) A selective medium for the isolation and enumeration of oral lactobacilli. J Dent Res 30:682–689

    PubMed  CAS  Google Scholar 

  19. Ruiz-Barba JL, Piard JC, Jimenez-Diaz R (1991) Plasmid profiles and curing of plasmids in Lactobacillus plantarum strains isolated from green olive fermentations. J Appl Bacteriol 74:417–421

    Google Scholar 

  20. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual. 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

    Google Scholar 

  21. Sims J, Koths K, Dressler D (1979) Single-stranded phage replication: positive- and negative-strand DNA synthesis. Cold Spring Harbor Symp Quant Biol 43:349–365

    PubMed  CAS  Google Scholar 

  22. Skaugen M (1989) The complete nucleotide sequence of a small cryptic plasmid from Lactobacillus plantarum. Plasmid 22(2):175–179

    Article  PubMed  CAS  Google Scholar 

  23. te Riele H, Michel B, Ehrlich SD (1986) Single-stranded plasmid DNA in Bacillus subtilis and Staphylococcus aureus. Proc Natl Acad Sci USA 83:2541–2545

    Article  PubMed  CAS  Google Scholar 

  24. van Kranenburg R, Golic N, Bongers R, Leer RJ, de Vos WM, Siezen RJ, Kleerebezem M (2005) Functional analysis of three plasmids from Lactobacillus plantarum. Appl Environ Microbiol 71:1223–1230

    Article  PubMed  CAS  Google Scholar 

  25. Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406–3415

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by National High-Tech R&D Program Grants (2006AA10Z317, 2007AA10Z354, and 2006BAB04A06) from the Ministry of Science and Technology of the People’s Republic of China.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yanling Hao.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Li, R., Zhai, Z., Yin, S. et al. Characterization of a Rolling-Circle Replication Plasmid pLR1 from Lactobacillus plantarum LR1. Curr Microbiol 58, 106–110 (2009). https://doi.org/10.1007/s00284-008-9280-z

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00284-008-9280-z

Keywords

Navigation