Abstract
Sixty root nodule isolates of soybean rhizobia indigenous to eight field sites in India were characterized using PCR-RFLP for repeated sequence RSα a 1195-bp DNA fragment, indole acetic acid production, and nitrogenase activity. Site-dependent variations were observed in terms of IAA production and nitrogenase activities. RSα was conserved in slow-growing soybean rhizobia across locations and sites and was absent in other Rhizobiaceae members and other bacterial genera. The results suggest that RSα can be a useful molecular marker for slow-growing soybean rhizobia. The study also showed the low presence of soybean nodulating fast growers in Indian soils.
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Literature Cited
Gordon AS, Weber RP (1951) Colorimetric estimation of indole acetic acid. Plant Physiol 26:192–195
Hardy RWF, Burns RC, Holstein RD (1968) Applications of the acetylene-ethylene assay for measurement of nitrogen fixation. Soil Biol Biochem 5:47–81
Hartmann A, Gomez M, Giraud JJ, Revellin C (1996) Repeated sequence RS α is diagnostic for Bradyrhizobium japonicum and Bradyrhizobium elkanii. Biol Fertil Soils 23:15–19
Jordan DC (1982) Transfer of Rhizobium japonicum Buchanan 1980 to Bradyrhizobium gen. Nov., genus of slow growing and root nodules bacteria from leguminous plants. Int J Syst Bacteriol 32:136–139
Kaluza K, Hahn M, Hennecke H (1985) Repeated sequences similar to insertion elements clustered around the nif region of the Rhizobium japonicum genome. J Bacteriol 162:535–542
Keyser HH, Bohlool BB, Hu TS, Weber DF (1982) Fast growing rhizobia isolated from root nodules of soybean. Science 215:1631–1632
Kuykendall LD, Roy MA, O’Neill JJ, Devine TE (1988) Fatty acids, antibiotic resistance and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Intnl J Syst Bacteriol 38:358–361
Kuykendall LD, Saxena B, Devine TE, Udell SE (1992) Short interspersed repetitive DNA sequence in prokaryotic genomes. J Bacteriol 174:4525–4529.
Masterson RV, Prakash RK, Amerly AG (1985) Conservation of symbiotic nitrogen fixation gene sequences in R. japonicum and B. japonicum. J Bacteriol 163:21–26
Minamisawa K (1990) Division of rhizobitoxin producing and hydrogen uptake-positive strains of Bradyrhizobium japonicum by nif DKE sequence divergence. Plant Cell Physiol 31:81–89
Minamisawa K, Fukai K (1991) Production of indole acetic acid by Bradyrhizobium japonicum. A correlation with genotype grouping and rhizobitoxine production. Plant Cell Physiol 32:1–9
Minamisawa K, Seki T, Ondera S, Kubota M, Asami T (1992) Genetic relatedness of Bradyrhizobium japonicum field isolates as revealed by repeated sequences and various other characteristics. Appl Environ Microbiol 58:2832–2839
Minamisawa K, Nakatsuka Y, Isawa T (1999) Diversity and field site variation of indigenous populations of soybean bradyrhizobia in Japan by fingerprints with repeated sequences RSα and RSβ . FEMS Microbiol Ecol 29:171–178
SatyaPrakash C, Annapurna K (2006) Diversity of soybean bradyrhizobial population adapted to an Indian soil. J Plant Biochem Biotechnol 15:27–32
Scholla MH, Elkan GH (1984) Rhizobium fredii sp. nov. a fast growing bacterium that effectively nodulates soybeans. Int J Syst Bacteriol 34:484–486
Vincent JM (1970) A manual for the practical study of Root Nodule Bacteria. International Biological Program Handbook No. 15. Oxford, Blackwell Science Ltd. pp 73–97
Wheatcroft R, Laberge S (1991) Identification and nucleotide sequence of Rhizobium meliloti insertion sequence ISRm3: similarity between the putative transposase encoded by ISRm3 and those encoded by Staphylococcus aureus IS256 and Thiobacillus ferrooxidans IST2. J Bacteriol 173:2530–2538
Wilson KJ, Sessitsch A, Corbo JC, Galler KE, Akkermans ADL, Jefferson RA, (1995) β-glucuronidase (GUS) transposons for ecological studies of rhizobia and other Gram negative bacteria. Microbiol 141:1691–1705
Xu LM, Ge C, Cui Z, Li J, Fan H (1995) Bradyrhizobium liaoningensis sp. nov. isolated from the root nodules of soybeans. Int J Syst Bacteriol 45:706–711
Acknowledgments
Thanks go to the National Phytotron Facility, IARI, for conducting the nodulation tests. B.N is indebted to IARI, New Delhi, for a junior research fellowship
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Annapurna, K., Balakrishnan, N. & Vital, L. Verification and Rapid Identification of Soybean Rhizobia in Indian Soils. Curr Microbiol 54, 287–291 (2007). https://doi.org/10.1007/s00284-006-0423-9
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DOI: https://doi.org/10.1007/s00284-006-0423-9