Abstract
It is now well appreciated that the crowded intracellular environment significantly modulates an array of physiological processes including protein folding–unfolding, aggregation, and dynamics to name a few. In this work we have studied the dynamics of domain I of the protein human serum albumin (HSA) in its urea-induced denatured states, in the presence of a series of commonly used macromolecular crowding agents. HSA was labeled at Cys-34 (a free cysteine) in domain I with the fluorophore 6-bromoacetyl-2-dimethylaminonaphthalene (BADAN) to act as a solvation probe. In partially denatured states (2–6 M urea), lower crowder concentrations (~ < 125 g/L) induced faster dynamics, while the dynamics became slower beyond 150 g/L of crowders. We propose that this apparent switch in dynamics is an evidence of a crossover from soft (enthalpic) to hard-core (entropic) interactions between the protein and crowder molecules. That soft interactions are also important for the crowders used here was further confirmed by the appreciable shift in the wavelength of the emission maximum of BADAN, in particular for PEG8000 and Ficoll 70 at concentrations where the excluded volume effect is not dominant.
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Acknowledgements
SKM thanks UGC, SB thanks CSIR and HR thanks IIT Delhi for their fellowships. PKC thanks Council of Scientific and Industrial Research (CSIR), India, Grant no. 01(2827)/15/EMR-II, for financial support and IIT Delhi for start-up funding.
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Mukherjee, S.K., Biswas, S., Rastogi, H. et al. Influence of crowding agents on the dynamics of a multidomain protein in its denatured state: a solvation approach. Eur Biophys J 49, 289–305 (2020). https://doi.org/10.1007/s00249-020-01435-y
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DOI: https://doi.org/10.1007/s00249-020-01435-y