Abstract
Soil function may be affected by cropping practices impacting the soil microbial community. The effect of different phosphorus (P) fertilization rates (0, 20, or 40 kg P2O5 ha−1) on soil microbial diversity was studied in 8-year-old alfalfa monocultures. The hypothesis that P fertilization modifies soil microbial community was tested using denaturing gradient gel electrophoresis and phospholipids fatty acid (PLFA) profiling to describe soil bacteria, fungi, and arbuscular mycorrhizal (AM) fungi diversity. Soil parameters related to fertility (soil phosphate flux, soluble P, moisture, phosphatase and dehydrogenase assays, and carbon and nitrogen content of the light fraction of soil organic matter) were also monitored and related to soil microbial ribotype profiles. Change in soil P fertility with the application of fertilizer had no effect on crop yield in 8 years, but on the year of this study was associated with shifts in the composition of fungal and bacterial communities without affecting their richness, as evidenced by the absence of effect on the average number of ribotypes detected. However, variation in soil P level created by a history of differential fertilization did not significantly influence AM fungi ribotype assemblages nor AM fungi biomass measured with the PLFA 16:1ω5. Fertilization increased P flux and soil soluble P level but reduced soil moisture and soil microbial activity, as revealed by dehydrogenase assay. Results suggest that soil P fertility management could influence soil processes involving soil microorganisms. Seasonal variations were also recorded in microbial activity, soil soluble P level as well as in the abundance of specific bacterial and fungal PLFA indicators of soil microbial biomass.
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References
Acton DF, Gregorich LJ (1995) La santé de nos sols: vers une agriculture durable au Canada. Centre de recherches sur les terres et les ressources biologiques. Agriculture and Agri-Food Canada, Ottawa
Ahmad Khan I, Ahmad S, Ayub N (2003) Response of oat (Avena sativa) to inoculation with vesicular arbuscular mycorrhizae (VAM) in the presence of phosphorus. Asian J Plant Sci 2:371–373
Al-Karaki G, McMichael B, Zak J (2004) Field response of wheat to arbuscular mycorrhizal fungi and drought stress. Mycorrhiza 14:263–269
Anonymous (1976) Inorganic phosphorus in water and wastewater. Industrial method no. 93-70W/B. Technicon Industrial Systems, Tarrytown
Artursson V, Finlay RD, Jansson JK (2006) Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth. Environ Microbiol 8:1–10
Atlas RM, Bartha R (1998) Microbial ecology: fundamentals and applications. Benjamin Cummings, Menlo Park
Baccanti M, Colombo B (1992) A new method for the automatic and selective determination of total organic carbon in sediments, soils, compost, particles in air, etc. Carlo Erba Instruments, Milano
Bais HP, Weir TL, Perry LG, Gilroy S, Vivanco JM (2006) The role of root exudates in rhizosphere interactions with plants and other organisms. Ann Rev Plant Biol 57:233–266
Balser T, Treseder KK, Ekenler M (2005) Using lipid analysis and hyphal length to quantify AM and saprotrophic fungal abundance along a soil chronosequence. Soil Biol Biochem 37:601–604
Benizri E, Amiaud B (2005) Relationship between plants and soil microbial communities in fertilized grasslands. Soil Biol Biochem 37:2055–2064
Biró B, Koves-Pechy K, Voros I, Takacs T, Eggenberg P, Strasser RJ (2000) Interrelations between Azospirillum and Rhizobium nitrogen-fixers and abuscular mycorrhizal fungi in the rhizosphere of alfalfa in sterile, AMF-free or normal soil conditions. Appl Soil Ecol 15:159–168
Broeckling CD, Broz AK, Bergelson J, Manter DK, Vivanco JM (2008) Root exudates regulate soil fungal community composition and diversity. Appl Environ Microbiol 74:738–744
Carvalho LM, Cacador I, Martins-Loucao MA (2001) Temporal and spatial variation of arbuscular mycorrhizas in salt marsh plants of the Tagus estuary (Portugal). Mycorrhiza 11:303–309
Casida LE, Klein DA, Santoro T (1964) Soil dehydrogenase activity. Soil Sci 98:371–378
Chu H, Lin X, Fujii T, Morimoto S, Yagi K, Hu J, Zhang J (2007) Soil microbial biomass, dehydrogenase activity, bacterial community structure in response to long-term fertilizer management. Soil Biol Biochem 39:2971–2976
Cruz AF, Hamel C, Hanson K, Selles F, Zentner RP (2009) Thirty-seven years of soil nitrogen and phosphorus fertility management shapes the structure and function of the soil microbial community in a Brown Chernozem. Plant Soil 315:173–184
da Silva P, Nahas E (2002) Bacterial diversity in soil in response to different plants, phosphate fertilizers and liming. Braz J Microbiol 33:304–310
Dunfield KE, Germida JJ (2003) Seasonal changes in the rhizosphere microbial communities associated with fieldgrown genetically modified canola (Brassica napus). Appl Environ Microbiol 69:7310–7318
Edwards U, Rogall T, Blöcker H, Emde M, Böttger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17:7843–7853
Eivazi F, Tabatabai MA (1977) Phosphatases in soils. Soil Biol Biochem 9:167–172
Environment Canada (2008) Historical weather. http://www.weatheroffice.gc.ca/ canada_e.html
Filion M, Hamelin RC, Bernier L, St-Arnaud M (2004) Molecular profiling of rhizosphere microbial communities associated with healthy and diseased black spruce (Picea mariana) seedlings grown in a nursery. Appl Environ Microbiol 70:3541–3551
Fliessbach A, Widmer F (2006) Estimating soil microbial biomass. In: Bloem J, Hopkins DW, Benedetti A (eds) Microbiological methods for assessing soil quality. CABI, Wallingford, p 307
Fox CA, MacDonald KB (2003) Challenges related to soil biodiversity research in agroecosystems—issues within the context of scale of observation. Can J Soil Sci 83:231–244
Ge Y, Zhang JB, Zhang LM, Yang M, He JZ (2008) Long-term fertilization regimes and diversity of an agricultural affect bacterial community structure soil in northern China. J Soils & Sediments 8:43–50
Girvan MS, Bullimore J, Ball AS, Pretty JN, Osborn AM (2004) Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Appl Environ Microbiol 70:2692–2701
Grayston SJ, Vaughan D, Jones D (1996) Rhizosphere carbon flow in trees, in comparison with annual plants: the importance of root exudation and its impact on microbial activity and nutrient availability. Appl Soil Ecol 5:29–56
Hagn A, Pritsch K, Schloter M, Munch JC (2003) Fungal diversity in agricultural soil under different farming management systems, with special reference to biocontrol strains of Trichoderma spp. Biol Fertil Soils 38:236–244
Hamel C, Hanson K, Selles F, Cruz AF, Lemke R, McConkey B, Zentner R (2006) Seasonal and long-term resource-related variations in soil microbial communities in wheat-based rotations of the Canadian prairie. Soil Biol Biochem 38:2104–2116
He JZ, Zheng Y, Chen CR, He YQ, Zhang LM (2008) Microbial composition and diversity of an upland red soil under long-term fertilization treatments as revealed by culture-dependent and culture-independent approaches. J Soils & Sediments 8:349–358
Hedley MJ, Stewart JWB (1982) Method to measure microbial phosphate in soils. Soil Biol Biochem 14:377–385
Hodge A, Robinson D, Fitter A (2000) Are microorganisms more effective than plants at competing for nitrogen? Trends Plant Sci 5:304–308
Houlden A, Timms-Wilson TM, Day MJ, Bailey MJ (2008) Influence of plant developmental stage on microbial community structure and activity in the rhizosphere of three field crops. FEMS Microbiol Ecol 65:193–201
Idoia G, Nieves G, Jone A (2004) Plant phenology influences the effect of mycorrhizal fungi on the development of Verticillium-induced wilt in pepper. Eur J Plant Pathol 110:227–238
Johnson D, Vandenkoornhuyse PJ, Leake JR, Gilbert L, Booth RE, Grime JP (2003) Plant communities affect arbuscular mycorrhizal fungal diversity and community composition in grassland microcosms. New Phytol 161:503–515
Kabir Z, O’Halloran IP, Fyles JW, Hamel C (1997) Seasonal changes of arbuscular mycorrhizal fungi as affected by tillage practices and fertilization: hyphal density and mycorrhizal root colonization. Plant Soil 192:285–293
Kennedy AC (1999) Bacterial diversity in agroecosystems. Agric Ecosyst Environ 74:65–76
Killham K (1985) A physiological determination of the impact of environmental stress on the activity of microbial biomass. Environ Pollut 38:283–294
Koske RE (1987) Distribution of VA mycorrhizal fungi along a latitudinal temperature gradient. Mycologia 79:55–68
Kowalchuk GA, De Souza FA, van Veen JA (2002) Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes. Mol Ecol 11:571–581
Li L, Yang A, Zhiwei Z (2005) Seasonality of arbuscular mycorrhizal symbiosis and dark septate endophytes in a grassland site in southwest China. FEMS Microbiol Ecol 54:367–373
Liu A, Hamel C, Spedding T, Zhang TQ, Mongeau R, Lamarre GR, Tremblay G (2008) Soil microbial carbon and phosphorus as influenced by phosphorus fertilization and tillage in a maize-soybean rotation in south-western Quebec. Can J Soil Sci 88:21–30
Liu X, Lindemann WC, Whitford WG, Steiner RL (2000) Microbial diversity and activity of disturbed soil in the northern Chihuahuan Desert. Biol Fertil Soils 32:243–249
Ma WK, Siciliano SD, Germida JJ (2005) A PCR-DGGE method for detecting arbuscular mycorrhizal fungi in cultivated soils. Soil Biol Biochem 37:1589–1597
Mäder P, Edenhofer S, Boller T, Wiemken A, Niggli U (2000) Arbuscular mycorrhizae in a long-term field trial comparing low-input (organic, biological) and high-put (conventional) farming systems in a crop rotation. Biol Fertil Soils 31:150–156
Muyzer G, de Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analyses of polymerase chain reaction-amplified genes for 16S rRNA. Appl Environ Microbiol 59:695–700
Myers R, Lerman L, Maniatis T (1985) Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturating gradient gel electrophoresis. Nucleic Acids Res 13:3131–3145
Nayyar A, Hamel C, Forge T, Selles F, Jefferson PG, Hanson K, Germida JJ (2008) Arbuscular mycorrhizal fungi and nematodes are involved in negative feedback on a dual culture of alfalfa and Russian wildrye. Appl Soil Ecol 40:30–36
Neumann G, Römheld V (2001) The release of root exudates as affected by the plant physiological status. In: Pinton R, Varanini Z, Nannipieri Z (eds) The Rhizosphere: biochemistry and organic substances at the soil–plant interface. Marcel Dekker, New York, pp 41–94
O'Leary JW (1965) Root-pressure exudation in woody plants. Bot Gaz 126:108–115
Pankhurst CE, Pierret A, Hawke BG, Kirby JM (2002) Microbiological and chemical properties of soil associated with macropores at different depths in a red-duplex soil in NSW Australia. Plant & Soil 238:11–20
Petersen SO, Klug MJ (1994) Effects of sieving, storage, and incubation temperature on the phospholipid fatty acid profile of a soil microbial community. Appl Environ Microbiol 60:2421–2430
Quilchano C, Marañón T (2002) Dehydrogenase activity in Mediterranean forest soils. Biol Fertil Soils 35:102–107
Rillig MC, Wright SF, Shaw MR, Field CB (2002) Artificial climate warming positively affects arbuscular mycorrhizae but decreases soil aggregate water stability in an annual grassland. Oikos 97:52–58
Ros M, Klammer S, Knapp B, Aichberger K, Insam H (2006) Long-term effects of compost amendment of soil on functional and structural diversity and microbial activity. Soil Use Manag 22:209–218
Rosenzweig M (1995) Species diversity in space and time. Cambridge University Press, Princeton
Ryan MH, Graham JH (2002) Is there a role for arbuscular mycorrhizal fungi in production agriculture? Plant Soil 244:263–271
Santos JC, Finlay RD, Tehler A (2006) Molecular analysis of arbuscular mycorrhizal fungi colonising a semi-natural grassland along a fertilisation gradient. New Phytol 172:159–168
Singh B, Pandey R (2003) Differences in root exudation among phosphorus-starved genotypes of maize and green gram and its relationship with phosphorus uptake. J Plant Nutr 26:2391–2401
Smith SE, Read DJ (2008) Mycorrhizal symbiosis. Harcourt Brace, San Diego
Statistics Canada (2007) Field and specialty crops (seeded area). http://www40.statcan.ca/l01/cst01/prim11a.htm
Stevenson FJ, Cole MA (1999) Cycles of soil: carbon, nitrogen, phosphorus, sulfur, micronutrients. Wiley, New York
Strickland TC, Sollins P (1987) Improved method for separating light and heavy fraction organic matter from soil. Soil Sci Soc Am J 51:1390–1393
Sun HY, Deng SP, Raun WR (2004) Bacterial community structure and diversity in a century-old manure-treated agroecosystem. Appl Environ Microbiol 70:5868–5874
Ter Braak CJF, Smilauer P (2002) CANOCO reference manual and canodraw for windows User's guide: Software for Canonical Community Ordination (version 4.5). Microcomputer Power, Ithaca
Topp GC (1993) Soil water content. In: Carter MR (ed) Soil sampling and methods of analysis. Lewis, Boca Raton, pp 541–557
Tracy DF, Frank DA (1998) Herbivore influence on soil microbial biomass and nitrogen mineralization in a northern grassland ecosystem: Yellowstone National Park. Oecologia 114:556–562
Vainio EJ, Hantula J (2000) Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycol Res 104:927–936
van der Heijden MGA, Klironomos J, Ursic M, Moutoglis P, Streitwolf-Engel R, Boller T, Wiemken A, Sanders I (1998) Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature 396:69–72
Vierheilig H, Bago B, Albrecht C, Poulin M-P, Piché Y (1998) Flavonoids and arbuscular mycorrhizal fungi. In: Manthey JA, Buslig BS (eds) Flavonoids in the living system. Plenum, New York, pp 9–33
Wei D, Yang Q, Zhang JZ, Wang S, Chen XL, Zhang XL, Li WQ (2008) Bacterial community structure and diversity in a black soil as affected by long-term fertilization. Pedosphere 18:582–592
Wieland G, Neumann R, Backhaus H (2001) Variation of microbial communities in soil, rhizosphere, and rhizoplane in response to crop species, soil type, and crop development. Appl Environ Microbiol 67:5949–5855
Wu TH, Chellemi DO, Graham JH, Rosskopf EN (2008) Assessment of fungal communities in soil and tomato roots subjected to diverse land and crop management systems. Soil Biol Biochem 40:1967–1970
Yergeau E, Vujanovic V, St-Arnaud M (2006) Changes in communities of Fusarium and arbuscular mycorrhizal fungi as related to different asparagus cultural factors. Microb Ecol 52:104–113
Zhong WH, Cai ZC (2007) Long-term effects of inorganic fertilizers on microbial biomass and community functional diversity in a paddy soil derived from quaternary red clay. Appl Soil Ecol 36:84–91
Ziadi N, Simard RR, Allard G, Lafond G (1999) Field evaluation of anion exchange membranes as a N soil testing method for grasslands. Can J Soil Sci 79:281–294
Acknowledgments
The authors would like to acknowledge the work of Stéphane Daigle at IRBV with statistical analyses and Keith G. Hanson at SPARC for providing essential help and environmental data. This work was supported by the Agriculture and Agri-Food Canada GAPS grant no. 348 allocated to C. Hamel and collaborators and by a NSERC discovery grant to M. St-Arnaud.
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Beauregard, M.S., Hamel, C., Atul-Nayyar et al. Long-Term Phosphorus Fertilization Impacts Soil Fungal and Bacterial Diversity but not AM Fungal Community in Alfalfa. Microb Ecol 59, 379–389 (2010). https://doi.org/10.1007/s00248-009-9583-z
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DOI: https://doi.org/10.1007/s00248-009-9583-z