Andradi-Brown DA, Dinesen Z, Head CE, Tickler DM, Rowlands G, Rogers AD (2019) The Chagos Archipelago. In: Mesophotic coral ecosystems 2019, pp 215–229. Springer, Champaign. doi: https://doi.org/10.1007/978-3-319-92735-0_12
Andrzejaczek S, Gleiss AC, Pattiaratchi CB, Meekan MG (2018) First insights into the fine-scale movements of the Sandbar Shark, Carcharhinus plumbeus. Front Mar Sci. https://doi.org/10.3389/fmars.2018.00483
Article
Google Scholar
Babcock RC, Kelly S, Shears NT, Walker JW, Willis TJ (1999) Changes in community structure in temperate marine reserves. Mar Ecol Prog Ser 189:125–134. https://doi.org/10.3354/meps189125
Article
Google Scholar
Bayley DTI, Mogg AOM (2019) Chapter 6—new advances in benthic monitoring technology and methodology. In: Sheppard C (ed) World Seas: an environmental evaluation, 2nd edn. Academic Press, New York, pp 121–132
Bean TP, Greenwood N, Beckett R, Biermann L, Bignell JP, Brant JL, Copp GH, Devlin MJ, Dye S, Feist SW, Fernand L, Foden D, Hyder K, Jenkins CM, van der Kooij J, Kröger S, Kupschus S, Leech C, Leonard KS, Lynam CP, Lyons BP, Maes T, Nicolaus EEM, Malcolm SJ, McIlwaine P, Merchant ND, Paltriguera L, Pearce DJ, Pitois SG, Stebbing PD, Townhill B, Ware S, Williams O, Righton D (2017) A Review of the tools used for marine monitoring in the UK: combining historic and contemporary methods with modeling and socioeconomics to fulfill legislative needs and scientific ambitions. Front Mar Sci. https://doi.org/10.3389/fmars.2017.00263
Article
Google Scholar
Beisiegel K, Darr A, Gogina M, Zettler ML (2017) Benefits and shortcomings in the employment of non-destructive benthic imagery for monitoring of hard-bottom habitats. Mar Pollut Bull 121:1. https://doi.org/10.1016/j.marpolbul.2017.04.009
CAS
Article
Google Scholar
Blamey LK, Branch GM, Reaugh-Flower KE (2010) Temporal changes in kelp forest benthic communities following an invasion by the rock lobster Jasus lalandii. Afr J Mar Sci 32:481–490. https://doi.org/10.2989/1814232X.2010.538138
Article
Google Scholar
Borja Á, Elliott M (2013) Marine monitoring during an economic crisis: the cure is worse than the disease. Mar Pollut Bull 68:1–3. https://doi.org/10.1016/j.marpolbul.2013.01.041
CAS
Article
PubMed
Google Scholar
Cappo M, Harvey E, Shortis M (2006) Counting and measuring fish with baited video techniques-an overview. In: Australian Society for Fish Biology Workshop Proceedings. Australian Society for Fish Biology Tasmania, pp 101–114
Chao A, Gotelli NJ, Hsieh TC, Sander EL, Ma KH, Colwell RK, Ellison AM (2014) Rarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studies. Ecol Monogr 84:45–67. https://doi.org/10.1890/13-0133.1
Article
Google Scholar
Chapple TK, Gleiss AC, Jewell OJD, Wikelski M, Block BA (2015) Tracking sharks without teeth: a non-invasive rigid tag attachment for large predatory sharks. Anim Biotelemetry 3:14. https://doi.org/10.1186/s40317-015-0044-9
Article
Google Scholar
Cinner JE, Huchery C, MacNeil MA, Graham NA, McClanahan TR, Maina J, Maire E, Kittinger JN, Hicks CC, Mora C (2016) Bright spots among the world’s coral reefs. Nature 535:416
CAS
Article
Google Scholar
Coffey DM, Holland KN (2015) First autonomous recording of in situ dissolved oxygen from free-ranging fish. Anim Biotelemetry 3:47. https://doi.org/10.1186/s40317-015-0088-x
Article
Google Scholar
de Vos L, Götz A, Winker H, Attwood CG (2014) Optimal BRUVs (baited remote underwater video system) survey design for reef fish monitoring in the Stilbaai Marine Protected Area. Afr J Mar Sci 36:1–10. https://doi.org/10.2989/1814232X.2013.873739
Article
Google Scholar
Denis V, Ribas-Deulofeu L, Sturaro N, Kuo C-Y, Chen CA (2017) A functional approach to the structural complexity of coral assemblages based on colony morphological features. Sci Rep 7:9849. https://doi.org/10.1038/s41598-017-10334-w
Article
PubMed
PubMed Central
Google Scholar
Fithian W, Elith J, Hastie T, Keith DA (2015) Bias correction in species distribution models: pooling survey and collection data for multiple species. Methods Ecol Evol 6:424–438. https://doi.org/10.1111/2041-210X.12242
Article
PubMed
Google Scholar
Fuiman L, Davis R, Williams T (2002) Behavior of midwater fishes under the Antarctic ice: observations by a predator. Mar Biol 140:815–822. https://doi.org/10.1007/s00227-001-0752-y
Article
Google Scholar
Giraud C, Calenge C, Coron C, Julliard R (2016) Capitalizing on opportunistic data for monitoring relative abundances of species. Biometrics 72:649–658. https://doi.org/10.1111/biom.12431
Article
PubMed
Google Scholar
Gleiss AC, Jorgensen SJ, Liebsch N, Sala JE, Norman B, Hays GC, Quintana F, Grundy E, Campagna C, Trites AW et al (2011) Convergent evolution in locomotory patterns of flying and swimming animals. Nat Commun 2:352
Article
Google Scholar
Harvey E, Shortis M (1995) A system for stereo-video measurement of sub-tidal organisms. Mar Technol Soc J 29:10–22
Google Scholar
Hernández-Fernández L, González de Zayas R, Weber L, Apprill A, Armenteros M (2019) Small-scale variability dominates benthic coverage and diversity across the Jardines de La Reina. Front Mar Sci, Cuba Coral Reef System. https://doi.org/10.3389/fmars.2019.00747
Book
Google Scholar
Hill JJ, Wilkinson CC (2004) Methods for ecological monitoring of coral reefs: a resource for managers. Australian Institute of Marine Science (AIMS), Townsville
Jewell OJD, Gleiss AC, Jorgensen SJ, Andrzejaczek S, Moxley JH, Beatty SJ, Wikelski M, Block BA, Chapple TK (2019) Cryptic habitat use of white sharks in kelp forest revealed by animal-borne video. Biol Lett 15:20190085. https://doi.org/10.1098/rsbl.2019.0085
Article
PubMed
PubMed Central
Google Scholar
Jones D, Bett B, Wynn R, Masson D (2009) The use of towed camera platforms in deep-water science. Underw Technol 28:41–50. https://doi.org/10.3723/ut.28.041
Article
Google Scholar
Krumhansl KA, Okamoto DK, Rassweiler A, Novak M, Bolton JJ, Cavanaugh KC, Connell SD, Johnson CR, Konar B, Ling SD, Micheli F, Norderhaug KM, Pérez-Matus A, Sousa-Pinto I, Reed DC, Salomon AK, Shears NT, Wernberg T, Anderson RJ, Barrett NS, Buschmann AH, Carr MH, Caselle JE, Derrien-Courtel S, Edgar GJ, Edwards M, Estes JA, Goodwin C, Kenner MC, Kushner DJ, Moy FE, Nunn J, Steneck RS, Vásquez J, Watson J, Witman JD, Byrnes JEK (2016) Global patterns of kelp forest change over the past half-century. Proc Natl Acad Sci USA 113:13785–13790. https://doi.org/10.1073/pnas.1606102113
CAS
Article
PubMed
PubMed Central
Google Scholar
Kumar VR, Hiremath SA, Bach M, Milz S, Witt C, Pinard C, Yogamani S, Mäder P (2020) FisheyeDistanceNet: self-supervised scale-aware distance estimation using monocular fisheye camera for autonomous driving. In: 2020 IEEE international conference on robotics and automation (ICRA), pp 574–581
Lajeunesse MJ (2011) On the meta-analysis of response ratios for studies with correlated and multi-group designs. Ecology 92:2049–2055. https://doi.org/10.1890/11-0423.1
Article
Google Scholar
Levitt GJ, Anderson RJ, Boothroyd CJT, Kemp FA (2002) The effects of kelp harvesting on its regrowth and the understorey benthic community at Danger Point, South Africa, and a new method of harvesting kelp fronds. Afr J Mar Sci 24:71–85
Article
Google Scholar
Lewis JB (2004) Has random sampling been neglected in coral reef faunal surveys? Coral Reefs 23:192–194
Article
Google Scholar
Mallet D, Pelletier D (2014) Underwater video techniques for observing coastal marine biodiversity: a review of sixty years of publications (1952–2012). Fish Res 154:44–62. https://doi.org/10.1016/j.fishres.2014.01.019
Article
Google Scholar
Marcon Y, Purser A (2017) PAPARA(ZZ)I: An open-source software interface for annotating photographs of the deep-sea. SoftwareX 6:69–80. https://doi.org/10.1016/j.softx.2017.02.002
Article
Google Scholar
McMahon CR, Autret E, Houghton JDR, Lovell P, Myers AE, Hays GC (2005) Animal-borne sensors successfully capture the real-time thermal properties of ocean basins. Limnol Oceanogr Methods 3:392–398. https://doi.org/10.4319/lom.2005.3.392
Article
Google Scholar
Papastamatiou YP, Meyer CG, Watanabe YY, Heithaus MR (2018) Animal-borne video cameras and their use to study shark ecology and conservation. In: Carrier J, Heithaus MR, Simpfendorfer CA (eds) Shark research: emerging technologies and applications for the field and laboratory. CRC Press, Boca Raton, FL, pp 83–92
Google Scholar
Pinheiro HT, Goodbody-Gringley G, Jessup ME, Shepherd B, Chequer AD, Rocha LA (2016) Upper and lower mesophotic coral reef fish communities evaluated by underwater visual censuses in two Caribbean locations. Coral Reefs 35:139–151
Article
Google Scholar
Ponganis PJ, Dam RPV, Marshall G, Knower T, Levenson DH (2000) Sub-ice foraging behavior of emperor penguins. J Exp Biol 203:3275–3278
CAS
Article
Google Scholar
Rees HL (2009) Guidelines for the study of the epibenthos of subtidal environments. ICES Tech Mar Environ Sci 42:94
Google Scholar
Richardson AJ, Poloczanska ES (2008) OCEAN SCIENCE: under-resourced, under threat. Science 320:1294–1295. https://doi.org/10.1126/science.1156129
CAS
Article
PubMed
Google Scholar
Rocha LA, Pinheiro HT, Shepherd B, Papastamatiou YP, Luiz OJ, Pyle RL, Bongaerts P (2018) Mesophotic coral ecosystems are threatened and ecologically distinct from shallow water reefs. Science 361:281–284. https://doi.org/10.1126/science.aaq1614
CAS
Article
PubMed
Google Scholar
Roche RC, Pratchett MS, Carr P, Turner JR, Wagner D, Head C, Sheppard CRC (2015) Localized outbreaks of Acanthaster planci at an isolated and unpopulated reef atoll in the Chagos Archipelago. Mar Biol 162:1695–1704. https://doi.org/10.1007/s00227-015-2708-7
Article
Google Scholar
Rothman MD, Anderson RJ, Bolton JJ, Boothroyd CJT, Kemp F (2010) A simple method for rapid estimation of Ecklonia maxima and Laminaria pallida biomass using floating surface quadrats. Afr J Mar Sci 32:137–143. https://doi.org/10.2989/18142321003714906
Article
Google Scholar
Ryan LA, Meeuwig JJ, Hemmi JM, Collin SP, Hart NS (2015) It is not just size that matters: shark cruising speeds are species-specific. Mar Biol 162:1307–1318. https://doi.org/10.1007/s00227-015-2670-4
Article
Google Scholar
Sheppard C, Sheppard A, Mogg A, Bayley D, Dempsey AC, Roache R, Turner J, Purkis S (2017) Coral bleaching and mortality in the Chagos Archipelago. Atoll Res Bull. https://doi.org/10.5479/si.0077-5630.613
Article
Google Scholar
Simmons SE, Tremblay Y, Costa DP (2009) Pinnipeds as ocean-temperature samplers: calibrations, validations, and data quality. Limnol Oceanogr Methods 7:648–656. https://doi.org/10.4319/lom.2009.7.648
Article
Google Scholar
Smith ANH, Anderson MJ, Pawley MDM (2017) Could ecologists be more random? Straightforward alternatives to haphazard spatial sampling. Ecography 40:1251–1255. https://doi.org/10.1111/ecog.02821
Article
Google Scholar
Tanaka H, Takagi Y, Naito Y (2001) Swimming speeds and buoyancy compensation of migrating adult chum salmon Oncorhynchus keta revealed by speed/depth/acceleration data logger. J Exp Biol 204:3895–3904
CAS
Article
Google Scholar
Teo S, Kudela R, Rais A, Perle C, Costa D, Block B (2009) Estimating chlorophyll profiles from electronic tags deployed on pelagic animals. Aquat Biol 5:195–207. https://doi.org/10.3354/ab00152
Article
Google Scholar
Thomson JA, Burkholder DA, Heithaus MR, Fourqurean JW, Fraser MW, Statton J, Kendrick GA (2015) Extreme temperatures, foundation species, and abrupt ecosystem change: an example from an iconic seagrass ecosystem. Glob Change Biol 21:1463–1474. https://doi.org/10.1111/gcb.12694
Article
Google Scholar
Tickler DM, Letessier TB, Koldewey HJ, Meeuwig JJ (2017) Drivers of abundance and spatial distribution of reef-associated sharks in an isolated atoll reef system. PLoS ONE. https://doi.org/10.1371/journal.pone.0177374
Article
PubMed
PubMed Central
Google Scholar
Walker JS, Jones MW, Laramee RS, Holton MD, Shepard EL, Williams HJ, Scantlebury DM, Marks NJ, Magowan EA, Maguire IE, Bidder OR, Di Virgilio A, Wilson RP (2015) Prying into the intimate secrets of animal lives; software beyond hardware for comprehensive annotation in ‘Daily Diary’ tags. Mov Ecol 3:29. https://doi.org/10.1186/s40462-015-0056-3
Article
PubMed
PubMed Central
Google Scholar
Watanabe YY, Payne NL, Semmens JM, Fox A, Huveneers C (2019) Swimming strategies and energetics of endothermic white sharks during foraging. J Exp Biol. https://doi.org/10.1242/jeb.185603
Article
PubMed
Google Scholar
Wilson RP, Liebsch N, Davies IM, Quintana F, Weimerskirch H, Storch S, Lucke K, Siebert U, Zankl S, Müller G, Zimmer I, Scolaro A, Campagna C, Plötz J, Bornemann H, Teilmann J, McMahon CR (2007) All at sea with animal tracks; methodological and analytical solutions for the resolution of movement. Deep Sea Res Part II Top Stud Oceanogr 54:193–210. https://doi.org/10.1016/j.dsr2.2006.11.017
Article
Google Scholar