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The role of the mobile proton in fucose migration


Fucose migration reactions represent a substantial challenge in the analysis of fucosylated glycan structures by mass spectrometry. In addition to the well-established observation of transposed fucose residues in glycan-dissociation product ions, recent experiments show that the rearrangement can also occur in intact glycan ions. These results suggest a low-energy barrier for migration of the fucose residue and broaden the relevance of fucose migration to include other types of mass spectrometry experiments, including ion mobility-mass spectrometry and ion spectroscopy. In this work, we utilize cold-ion infrared spectroscopy to provide further insight into glycan scrambling in intact glycan ions. Our results show that the mobility of the proton is a prerequisite for the migration reaction. For the prototypical fucosylated glycans Lewis x and blood group antigen H-2, the formation of adduct ions or the addition of functional groups with variable proton affinity yields significant differences in the infrared spectra. These changes correlate well with the promotion or inhibition of fucose migration through the presence or absence of a mobile proton.


Glycans are among the most abundant biomacromolecules in living organisms and are essential in a variety of biological functions, such as cell-signaling and molecular recognition [1, 2]. The glycosylation patterns of proteins, lipids, or other organic molecules are in many cases highly dynamic, which is obvious in an evolutionary sense [3], but also accounts for physiological as well as pathological variations [4]. Fucose is a deoxy hexose found in a wide range of biologically relevant glycans and is easily distinguishable from many other hexoses due to the lack of the hydroxyl group at the C-6 position. In mammalian glycans, fucose is the fifth most abundant monosaccharide (7.2%), and nearly every fourth terminal end (23.8%) carries a fucose [5]. Among human milk oligosaccharides, up to 80% are fucosylated, depending on the individual’s secretor status [6]. Glycans attached to proteins are usually fucosylated in the Golgi apparatus or in the endoplasmic reticulum during the final step of glycan processing by different fucosyltransferases [7]. Altered fucosylation can account for pathological variations, for example, the overexpression of fucose in cancer cells. The fucosylated Lewis y (Ley) antigen is highly expressed on a wide range of tumors, and tumor growth can be inhibited by suppressing Ley expression [4, 8, 9].

The inherent structural diversity of glycans and the limited availability of standards have made glycan structural characterization a major analytical challenge. Tandem mass spectrometry (MS) is a powerful tool in the analysis of glycan structures [10,11,12,13] and is often combined with chromatography [14] and/or ion mobility spectrometry [15, 16]. In general, tandem MS can provide the mass of the intact ion and, additionally, the masses of its fragment ions in a single experiment. Different types of fragmentation techniques yield distinct types of fragment ions that provide information on the original glycan sequence. Information-rich fragment spectra contain glycosidic fragments and/or cross-ring fragments, but can also show rearrangement products and internal fragments. An effective application of MS in glycan analysis therefore requires comprehensive knowledge of potential gas-phase reactions and fragmentation pathways.

Suitable techniques to shed light on the mechanism of a gas-phase reaction in mass spectrometry are infrared (IR) spectroscopy [17, 18], ion mobility-mass spectrometry (IM-MS) [19, 20], hydrogen-deuterium exchange (HDX) [21], and stable isotope labeling [22] or computational modeling [23]. A very prominent rearrangement reaction in biomolecules that has been investigated extensively in the last years is peptide scrambling. Peptide scrambling in protonated or multiply protonated b-type peptide ions involves a head-to-tail macrocyclization and subsequent reopening reaction prior to fragmentation in tandem MS with collision-induced dissociation (CID). Consequently, the original sequence information is lost during scrambling, which may result in erroneous assignments. The phenomenon was first reported in 1997 [24]. Since the beginning of the 2000s, the underlying mechanism and the structure of the macrocyclic intermediate have been successfully proven using mainly a combination of IR spectroscopy and computational modeling [25]. It has been found that the incidence of this gas-phase rearrangement is negligible in shotgun proteomics but of major interest in understanding the fragmentation pathways in CID [26,27,28].

For more than 20 years, researchers have also been studying glycan rearrangement reactions in tandem MS experiments [29, 30]. Most of these studies are based on the observation of unusual fragment masses that arise from a rearrangement of fucose and occasionally other monosaccharide units such as xylose [31] during the CID process. This phenomenon is also often referred to as internal residue loss (IRL) and has been studied extensively by probing the influence of different adduct ions [32, 33] or an aglycon [34] and different derivatization strategies [35,36,37]. Based on these findings, various mechanisms have been proposed [30, 34], all of which involve a mobile proton that is able to migrate to the reactive site. However, despite these efforts, the underlying mechanism is not fully understood to date.

Recently, we reported a glycan sequence scrambling reaction in the intact trisaccharide ions Lewis x (Lex) and blood group antigen H-2 (BG-H2), which are substructures of the tetrasaccharide Lewis y (Ley) [38]. The observed fucose migration involves the cleavage of a glycosidic bond and the subsequent or concerted formation of a new glycosidic bond (Fig. 1). The reaction takes place in the presence of a proton and is inhibited in its absence, namely in the sodium adducts. Interestingly, this reaction was found to occur under soft conditions without substantial collisional activation, which indicates a rather low-energy barrier for the rearrangement. Based on these results, we concluded that fucose residues could spontaneously migrate from the terminal end of a glycan chain to adjacent or remote intramolecular sites of the glycan without CID. The previously reported occurrence of unexpected fragment masses in IRL is therefore likely only a result, but not the cause of fucose migration.

Fig. 1
figure 1

Glycan rearrangement reactions consist of two independent, consecutive steps: fucose migration and then collision-induced dissociation (CID) with internal residue loss (IRL) products and glycosidic fragments. The energy barrier for a fucose migration is low and the product of a fucose migration reaction is stable. The IRL fragment is labeled with an asterisk. A, B, and C represent monosaccharides. Glycosidic linkages are indicated with bars

Here, we build on our previous findings and investigate the role of the mobile proton in fucose migration in the intact ion pair BG-H2 and Lex using cold-ion IR spectroscopy. In order to increase or diminish the mobility of protons in the investigated ions, functional groups and adduct ions with competitive proton affinity have been utilized. Our results clearly show that a mobile proton at a specific site of the molecule is required for fucose migration.


Sample preparation

Commercially available Lewis and blood group antigens were purchased from Dextra Laboratories (Reading, UK) and Biozol (Eching, DE) and used without further purification. Solvents (HPLC grade) and labeling reagents were purchased from Sigma-Aldrich (St Louis, USA) and used without further purification. Aqueous glycan stock solutions (1 mM and 100 μM for labeled glycans) were further diluted prior use with water/methanol (v/v, 50/50) to yield 20–500 μM analyte solutions. To promote the adduct formation in the measurements of [M+NH4]+, [M+NMe3H]+ and [M+NEt3H]+, ammonium acetate, trimethylammonium chloride, and triethylammonium acetate, respectively, were added in concentrations of 1–5 mM.

Synthesis of labeled glycans

For glycan labeling, the Lewis and blood group antigens were dissolved in water to yield 100 mM stock solutions. The stock solutions were divided into 10 μL (1 μmol) aliquots and freeze-dried. The glycans were labeled with 2-aminobenzoic acid (AA) and 4-amino-N-(2-diethylaminoethyl) benzamide (procainamide) via reductive amination using standard protocols [39]. Removal of the excess label was performed using paper chromatography [40]. The labeled glycans were further purified using HyperSep Hypercarb SPE cartridges (ThermoFisher Scientific, Waltham, Massachusetts, US) according to manufacturer’s instructions. The labeled glycans were then freeze-dried and dissolved to aqueous 100 μM stock solutions.

Cold-ion IR spectroscopy

The experimental setup (Fig. 2) has been comprehensively described and the interested reader is referred to the literature [41]. Briefly, glycans are ionized by nano-electrospray ionization, mass-to-charge selected in a quadrupole mass filter and stored in a hexapole ion trap. The ions are picked up by traversing superfluid helium nanodroplets and rapidly cooled to the equilibrium temperature of the superfluid helium bath (0.37 K). The helium droplets, optically transparent within the IR range, show only weak interactions with the embedded molecular ions and therefore do not contribute to the optical spectra. In the detection region, the embedded ions are irradiated with IR light provided by the Fritz Haber Institute IR free-electron laser (FHI-FEL). The FEL macropulse (duration of 10–15 μs) comprises micropulses with a duration of ca. 10 ps separated by 1 ns (1-GHz micropulse repetition rate). Following the absorption of a resonant photon within a micropulse, the ions are cooled to the vibrational ground state via helium evaporation from the droplet. After the absorption of multiple photons from discrete micropulses, the ion is ejected from the droplet and detected in a time-of-flight mass analyzer. The IR spectrum is recorded as the integrated ion intensity as a function of the laser wavelength in the fingerprint range at the maximum from 900 to 1800 cm−1. For each molecule, at least two independent scans are measured and averaged.

Fig. 2
figure 2

Schematic view of the experimental setup and the attached Fritz Haber Institute free-electron laser (FHI-FEL). The setup consists of a nano-electrospray ionization (nano-ESI) source, a quadrupole mass filter and a helium-droplet source, which is on-axis with a coolable ion trap and the IR laser beam

Results and discussion

Ammonium adduct ions

First, trisaccharides of the Lewis y-series (Ley-series) were investigated as ammonium adducts [M+NH4]+ (m/z 547). The Ley-series consists of the tetrasaccharide Ley and the two trisaccharides BG-H2 and Lex that are substructures of Ley (Fig. 3a; Electronic Supplementary Material (ESM) Fig. S1). The IR spectra of the trisaccharide standards BG-H2 and Lex are shown in Fig. 3b and were recorded using the instrumental setup described above. The instrument settings were tuned to minimize activation of the parent ion. As expected, both IR spectra show well-resolved features in the range of 1000 cm−1 to 1700 cm−1. Generally, vibrations in glycans around 1100 cm−1 are associated with numerous C–O and coupled C–O–C–O-stretch vibrations of the (hemi-)acetal. Features above 1500 cm−1 and around 1650 cm−1 canonically stem from the amide II (N–H bend) and amide I (C=O stretch) vibrations in N-acetylglucosamine monosaccharides. Weaker vibrations between 1200 and 1500 cm−1 are O–H-bending modes. With a charged site at the amide group, the amide vibrational modes can be strongly shifted, e.g. with a proton at the oxygen, the amide I vibration is likely red-shifted. A confident assignment and differentiation of the amide I and II features can therefore not be made.

Fig. 3
figure 3

a Symbol nomenclature for glycan (SNFG, left panel) [42] and the Lewis y series (right panel) with the tetrasaccharide Ley and the two trisaccharides BG-H2 and Lex that are substructures of Ley. b IR spectra of the parent ions BG-H2 (upper panel) and Lex (lower panel) investigated as [M+NH4]+ species (m/z 547) in the range of 1000–1200 cm−1 and 1600–1710 cm−1. The two IR spectra are nearly identical

The IR spectrum of BG-H2 as [M + NH4]+ (Fig. 3b, upper panel) shows nine well-resolved bands in the range from 1000 to 1200 cm−1. The strongest absorptions are found at 1045, 1075 and 1089 cm−1. Between 1200 and 1600 cm−1, weaker absorption bands, which are not resolvable with the utilized instrumental setup, are observed. A broad absorption is found in the higher wavenumber range of the spectrum around 1660 cm−1. A comparison of the IR spectrum of BG-H2 with that of Lex as [M+NH4]+ ion (Fig. 3b, lower panel) reveals many similarities. The main absorptions in the IR spectrum of Lex are found between 1000 and 1200 cm−1 and around 1660 cm−1. In the lower wavenumber range, the strongest absorptions are at 1075 and 1089 cm−1 and in the higher wavenumber range, a broad absorption is found around 1660 cm−1.

In general, all features in the IR spectrum of Lex are also present in the spectrum of BG-H2, however, with varying intensity, which likely results from differing ratios of alpha and beta anomers in the gas phase. The nearly identical IR spectra of the intact ammonium adduct ions therefore imply that the trisaccharides BG-H2 and Lex rearrange to the same chemical structure, not only as protonated ions as observed previously [38] but also as ammonium adduct ions. This is in good agreement with previously reported CID experiments in which IRL reactions have been found for ammonium adducts [33].

Observing fucose migration in protonated ions and ammonium adducts at almost identical instrument conditions indicates a comparable energy barrier, migration mechanism and possibly even structure in the two types of ions. In order to test this hypothesis, the optical signatures of protonated and ammonium adduct ions of the Ley series are compared. Remarkably, very similar IR signatures are observed for the isomers BG-H2 and Lex, regardless whether they are present as [M+NH4]+ or [M+H]+ species. The stacked overlay in Fig. 4 reveals that the main features are qualitatively present in all four IR spectra (indicated by vertical dashed lines). This is a rather surprising observation, as different adduct ions typically change the gas-phase conformation of the molecule substantially and therefore lead to distinct IR traces. A possible explanation for the striking similarities observed here is that the present species are in fact not strict [M+NH4]+ adducts, but rather neutral ammonia adducts of a protonated glycan [NH3+MH]+. The proton directly transfers to the glycan while the ammonia is coordinated as the neutral species, which does not seem to change the gas-phase conformation of the glycan. With only weak interactions of the neutral ammonia molecule, the observed absorptions largely correspond to those of the protonated glycan ion, which in turn is able to undergo fucose migration.

Fig. 4
figure 4

Stacked overlay of the IR spectra of the parent ions BG-H2 and Lex investigated as [M+H]+ and [M+NH4]+ species in the range of 1000–1710 cm−1 (break between 1150 and 1640 cm−1). The spectra of the protonated species are reproduced from Mucha et al. [38] and shown in the of 1020–1690 cm−1. The four IR spectra are highly similar

Ammonia loss can be an indicator for the [NH3+MH]+ species. Recorded as [M+H]+ ions, the ammonia loss can either be produced by varying the cone voltage or also after ejection from the helium nanodroplet. The latter has been recorded over all scans. A fraction of [M+H]+ ions are detectable in each scan indicating loosely bound ammonia. It should be pointed out that the [M+H]+ ion signal is recorded with each scan but it is not part of the resulting IR spectrum of the [M+NH4]+ species.

Gas-phase proton transfer is one of the most commonly observed processes in ion-molecule chemistry and studies have provided a substantial database of thermochemical parameters. For singly charged species, the protonation propensity is predominantly governed by the gas-phase proton affinity (PA) of the present functional groups. The gas-phase basicity (GB) and the PA are directly derived from the reaction of a neutral molecule with a proton to form the protonated species, with the GB corresponding to the Gibbs free energy change and the PA as the respective enthalpy change [43]. In the trisaccharides BG-H2 and Lex, the proton is likely located at the C=O of the amide (PA 230 kcal mol−1 for C=O compared to 220 kcal mol−1 for the N–H group) [44]. Even though the actual proton affinity can deviate depending on the local environment, the PA of free ammonia is considerably lower (204 kcal mol−1) [43] which supports the formation of a [NH3+MH]+-type ion and the presence of a mobile proton.

Alkylammonium adduct ions

To further test the impact of proton mobility, the trisaccharide Lex was investigated with two alkylammonium adduct ions as [Lex+NMe3H]+ and [Lex+NEt3H]+ (Fig. 5). The spectra of BG-H2 with different alkylammonium adduct ions could not be recorded as a result of unstable electrospray conditions. As shown in Fig. 5b, trimethylammonia (PA 227 kcal mol−1) and triethylammonia (PA 235 kcal mol−1) [43] have substantially higher gas-phase PAs than ammonia. A proton transfer from the alkylammonium ions to the glycan as observed for ammonium ions is therefore energetically unlikely. The spectra of [Lex + NMe3H]+ and [Lex + NEt3H]+ shown in Fig. 5a confirm this hypothesis. The two traces are almost identical, but differ considerably from the spectrum of [Lex+NH4]+. The spectra of the alkylammonium adducts show two well-resolved bands at 1050 cm−1 and 1085 cm−1 of which the first is a split band. In the higher wavenumber range, a peak is found, which in comparison to the ammonium adduct is slightly blue-shifted. The only noticeable difference in the two alkylammonium adduct spectra are a side peak at 1081 cm−1 in the spectrum of [Lex+NMe3H]+ and a subtle shift of the feature at higher wavenumbers. However, the tremendous difference to the spectrum of the ammonium adduct is apparent. Alkylammonium adduct ions demobilize the proton or at least offer two possible protonation sites. Therefore, the gas-phase structures of the alkylammonium adducts of Lex are rather similar while those of the ammonium adduct closely resembles that of the protonated species.

Fig. 5
figure 5

a Overlay of the IR spectra of [Lex+NMe3H]+ (black line), [Lex+NEt3H]+ (blue line) and [Lex+NH4]+ (blue filled) in the range of 1000–1710 cm−1 (break between 1150 and 1640 cm−1). The spectra of the alkylammonium adducts are very similar and differ from that of the ammonium adduct of Lex. b Proton affinity of different adduct ions in kcal mol−1 [43] compared to the proton affinity of the C=O group in a representative N-acetylglucosamine (gray line) [44]. Due to the local environment, the PA of the C=O group in Lex can be slightly different

Fluorescently labeled glycan ions

Glycans are challenging to study with common analytical techniques, especially at low analyte concentrations. A modification of the sugars with fluorescent labels facilitates their analysis and quantification by liquid chromatography using fluorescence detection. Since glycans themselves do not fluoresce, they are typically modified with a fluorophore at their reducing end by reductive amination. Popular chromophores in LC are 2-aminobenzamide (2-AB), anthranilic acid (AA) or 4-amino-N-(2-diethylaminoethyl) benzamide (procainamide) [45, 46]. Labeling often goes in-line with improved protonation efficiency due to the presence of one or more apparent basic sites at the label. As a result, fluorescence labeling is also beneficial for hyphenated LC-MS techniques [47]. However, to date relatively little is known about the impact of fluorescence labeling on the previously described fucose migration reaction. In order to evaluate this, the trisaccharides of the Ley-series were modified with the common AA (m/z 651) and procainamide-labels (m/z 749) (Fig. 6a). IR spectra of the protonated ions [M+H]+ were recorded in the range from 900 to 1800 cm−1 and 1000 to 1800 cm−1, respectively, and the obtained traces are shown in Fig. 6b and c.

Fig. 6
figure 6

a Chemical structures of the investigated, labeled trisaccharides. Bold red atoms indicate possible protonation sites. b IR spectra of the parent ions Lex-AA (upper panel) and BG-H2-AA (lower panel) investigated as [M+H]+ species (m/z 651) in the range of 900–1800 cm−1. The two IR spectra are distinguishable from each other, and the gray dashed lines indicate major differences. c IR spectra of Lex-procainamide (upper panel) and BG-H2-procainamide (lower panel) investigated as [M+H]+ species (m/z 749) in the range of 1000–1800 cm−1. For both isomeric sets, the two IR spectra are clearly distinguishable from each other, and the gray dashed lines indicate major differences

In the range from 1000 to 1200 cm−1, the dominant vibrations arise from the typical C–O and coupled C–O–C–O-stretch vibrations of the (hemi-)acetal. In stark contrast to the spectra of the unmodified trisaccharides, all four spectra show a large number of vibrations in the range from 1250 to 1500 cm−1, which are predominantly associated with functional groups of the labels. In the last part of the spectra, from 1500 to 1800 cm−1, the vibrations derive either from the amide vibrations in the N-acetylglucosamine or from the label.

In AA-labeled glycans (Fig. 6b), vibrations above 1700 cm−1, stem from the C=O stretch in the carboxylic acid at the aromatic ring. The IR spectra of the AA-labeled glycans show well-resolved bands but also broad features. The latter may result from a larger set of accessed low-energy conformers and/or protonation isomers (protomers) [48]. In the IR spectrum BG-H2-AA, the main features are found at 1087, 1305, 1523, and 1740 cm−1. In the IR spectrum of the isomeric trisaccharide Lex-AA, the main absorptions are at 1044 and 1087 cm−1 in the lower wavenumber range and at 1305 and 1582 cm−1 and at 1705 and 1743 cm−1 in the higher wavenumber range. The IR fingerprints of the two isomeric trisaccharides differ. Especially above 1450 cm−1, the vibration bands are diagnostic. The main differences in the IR spectra are marked with vertical gray dashed lines.

In procainamide-labeled glycans (Fig. 6c), a second amide group and a tertiary amine contribute to the IR spectrum. The spectra of BG-H2-procainamide and Lex-procainamide show less well-resolved features than the spectra of the AA-labeled derivatives. In both spectra, strong amide vibrations are found from 1500 to 1700 cm−1. The spectral signatures or fingerprints of the two isomeric trisaccharides are clearly distinguishable from each other.

Based on the observed spectra, both labels—anthranilic acid and procainamide—seem to alter the proton mobility in the Ley series, which leads to an inhibition of fucose migration. Based on the data, it is not possible to exclude a rearrangement reaction; however, the observed chemical structures are clearly different.

For procainamide, these results are consistent with previous CID experiments, which show that this label reduces or inhibits IRL reactions in fucosylated glycans [49]. Glycans labeled with anthranilic acid, on the other hand, have been reported to produce unknown mass-to-charge signals from IRL reactions in tandem MS experiments [50]. A possible explanation for this different behavior might be the competition between protonation sites. In AA-labeled glycans, the proton has at least two possible protonation sites with comparable affinity: the amide group on the N-acteylglucosamine and the secondary, aromatic amine. The former would facilitate a migration reaction, while the latter would inhibit it. In the procainamide label, the basic tail with a tertiary amine probably has the highest proton affinity while the secondary, aromatic amine and the aromatic amide have compatible affinities to the N-acteylglucosamine. It is therefore conceivable that in both cases more than one protomer is populated at room temperature, a migration, however, is—if at all—only conceivable in case of the AA label. It can therefore be concluded that an additional functional group with comparable or higher proton affinity inhibits or at least alters the fucose migration reaction in the isomeric trisaccharides of the Ley-series.


Here, we use cold-ion IR spectroscopy to study the impact of adduct formation and proton mobility on fucose migration reactions in the glycan isomers BG-H2 and Lex. In ammonium adducts, the proton is located at the glycan in the form of a [NH3+MH]+-type ion of the individual isomers. These ions are in many ways similar to [MH]+ ions and show fucose migration to the same, but yet not fully unraveled, chemical structure. In the alkylammonium adducts of Lex, on the other hand, the proton is immobilized at the adduct, which leads to a distinct glycan structure in which fucose migration is likely not occurring. A similar behavior was observed when different functional groups with competitive proton affinity are introduced. In these structures, fucose migration to one chemical structure is inhibited or at least altered, since multiple competing protonation sites in the glycan reduce proton mobility. These results agree well with our previous results in which fucose migration is inhibited in the sodium adducts.

In summary, our results suggest that a proton needs to be localized on the trisaccharide and presumably in close proximity to the rearranging monosaccharide for the fucose migration reaction to take place. This observation validates what has already been found in work on IRL. The proton mobility is influenced in the presence of adduct ions or functional groups with competitive proton affinity.


  1. Varki A. Biological roles of oligosaccharides: all of the theories are correct. Glycobiology. 1993;3(2):97–130.

    CAS  PubMed  Article  Google Scholar 

  2. Dwek RA. Glycobiology: toward understanding the function of sugars. Chem Rev. 1996;96(2):683–720.

    CAS  PubMed  Article  Google Scholar 

  3. Varki A. Nothing in glycobiology makes sense, except in the light of evolution. Cell. 2006;126(5):841–5.

    CAS  PubMed  Article  Google Scholar 

  4. Myers RB, Srivastava S, Grizzle WE. Lewis Y antigen as detected by the monoclonal antibody BR96 is expressed strongly in prostatic adenocarcinoma. J Urol. 153(5):1572–4.

  5. Werz DB, Ranzinger R, Herget S, Adibekian A, von der Lieth C-W, Seeberger PH. Exploring the structural diversity of mammalian carbohydrates (“glycospace”) by statistical databank analysis. ACS Chem Biol. 2007;2(10):685–91.

    CAS  PubMed  Article  Google Scholar 

  6. Bode L. Human milk oligosaccharides: every baby needs a sugar mama. Glycobiology. 2012;22(9):1147–62.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  7. Schneider M, Al-Shareffi E, Haltiwanger RS. Biological functions of fucose in mammals. Glycobiology. 2017;27(7):601–18.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  8. Zhang Z, Sun P, Liu J, Fu L, Yan J, Liu Y, et al. Suppression of FUT1/FUT4 expression by siRNA inhibits tumor growth. BBA Mol Cell Res. 2008;1783(2):287–96.

    CAS  Google Scholar 

  9. Yin BWT, Finstad CL, Kitamura K, Federici MG, Welshinger M, Kudryashov V, et al. Serological and immunochemical analysis of Lewis Y (Ley) blood group antigen expression in epithelial ovarian cancer. Int J Cancer. 1996;65(4):406–12.

    CAS  PubMed  Article  Google Scholar 

  10. Harvey DJ. Identification of protein-bound carbohydrates by mass spectrometry. Proteomics. 2001;1(2):311–28.

    CAS  PubMed  Article  Google Scholar 

  11. Leymarie N, Zaia J. Effective use of mass spectrometry for glycan and glycopeptide structural analysis. Anal Chem. 2012;84(7):3040–8.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  12. Sheeley DM, Reinhold VN. Structural characterization of carbohydrate sequence, linkage, and branching in a quadrupole ion trap mass spectrometer: neutral oligosaccharides and N-linked glycans. Anal Chem. 1998;70(14):3053–9.

    CAS  PubMed  Article  Google Scholar 

  13. Ruhaak LR, Xu G, Li Q, Goonatilleke E, Lebrilla CB. Mass spectrometry approaches to glycomic and glycoproteomic analyses. Chem Rev. 2018;118(17):7886–930.

    CAS  PubMed  Article  Google Scholar 

  14. Wuhrer M, Deelder AM, Hokke CH. Protein glycosylation analysis by liquid chromatography–mass spectrometry. J Chromatogr B. 2005;825(2):124–33.

    CAS  Article  Google Scholar 

  15. Hofmann J, Hahm HS, Seeberger PH, Pagel K. Identification of carbohydrate anomers using ion mobility-mass spectrometry. Nature. 2015;526(7572):241–4.

    CAS  PubMed  Article  Google Scholar 

  16. Gray CJ, Thomas B, Upton R, Migas LG, Eyers CE, Barran PE, et al. Applications of ion mobility mass spectrometry for high throughput, high resolution glycan analysis. Biochim Biophys Acta Gen Subj. 2016;1860(8):1688–709.

    CAS  Article  Google Scholar 

  17. Polfer NC, Oomens J, Suhai S, Paizs B. Infrared spectroscopy and theoretical studies on gas-phase protonated leu-enkephalin and its fragments: direct experimental evidence for the mobile proton. J Am Chem Soc. 2007;129(18):5887–97.

    CAS  PubMed  Article  Google Scholar 

  18. Erlekam U, Bythell BJ, Scuderi D, Van Stipdonk M, Paizs B, Maître P. Infrared spectroscopy of fragments of protonated peptides: direct evidence for macrocyclic structures of b5 ions. J Am Chem Soc. 2009;131(32):11503–8.

    CAS  PubMed  Article  Google Scholar 

  19. Garcia IR, Giles K, Bateman RH, Gaskell SJ. Studies of peptide a- and b-type fragment ions using stable isotope labeling and integrated ion mobility/tandem mass spectrometry. J Am Soc Mass Spectrom. 2008;19(12):1781–7.

    Article  CAS  Google Scholar 

  20. Jia C, Wu Z, Lietz CB, Liang Z, Cui Q, Li L. Gas-phase ion isomer analysis reveals the mechanism of peptide sequence scrambling. Anal Chem. 2014;86(6):2917–24.

    CAS  PubMed  Article  Google Scholar 

  21. Chen X, Yu L, Steill JD, Oomens J, Polfer NC. Effect of peptide fragment size on the propensity of cyclization in collision-induced dissociation: oligoglycine b2−b8. J Am Chem Soc. 2009;131(51):18272–82.

    CAS  PubMed  Article  Google Scholar 

  22. Bythell BJ, Molesworth S, Osburn S, Cooper T, Paizs B, Van Stipdonk M. Structure and reactivity of a n and a* n peptide fragments investigated using isotope labeling, tandem mass spectrometry, and density functional theory calculations. J Am Soc Mass Spectrom. 2008;19(12):1788–98.

    CAS  PubMed  Article  Google Scholar 

  23. Harrison AG, Young AB, Bleiholder C, Suhai S, Paizs B. Scrambling of sequence information in collision-induced dissociation of peptides. J Am Chem Soc. 2006;128(32):10364–5.

    CAS  PubMed  Article  Google Scholar 

  24. Vachet RW, Bishop BM, Erickson BW, Glish GL. Novel peptide dissociation: gas-phase intramolecular rearrangement of internal amino acid residues. J Am Chem Soc. 1997;119(24):5481–8.

    CAS  Article  Google Scholar 

  25. Harrison AG. To b or not to b: the ongoing saga of peptide b ions. Mass Spectrom Rev. 2009;28(4):640–54.

    CAS  PubMed  Article  Google Scholar 

  26. Goloborodko AA, Gorshkov MV, Good DM, Zubarev RA. Sequence scrambling in shotgun proteomics is negligible. J Am Soc Mass Spectrom. 2011;22(7):1121–4.

    CAS  PubMed  Article  Google Scholar 

  27. Saminathan IS, Wang XS, Guo Y, Krakovska O, Voisin S, Hopkinson AC, et al. The extent and effects of peptide sequence scrambling via formation of macrocyclic b ions in model proteins. J Am Soc Mass Spectrom. 2010;21(12):2085–94.

    CAS  PubMed  Article  Google Scholar 

  28. Patrick AL, Polfer NC. Peptide fragmentation products in mass spectrometry probed by infrared spectroscopy. In: Rijs AM, Oomens J, editors. Gas-phase IR spectroscopy and structure of biological molecules. Cham: Springer International Publishing; 2015. p. 153–81.

    Google Scholar 

  29. Kováčik V, Hirsch J, Kováč P, Heerma W, Thomas-Oates J, Haverkamp J. Oligosaccharide characterization using collision-induced dissociation fast atom bombardment mass spectrometry: evidence for internal monosaccharide residue loss. J Mass Spectrom. 1995;30(7):949–58.

    Article  Google Scholar 

  30. Harvey DJ, Mattu TS, Wormald MR, Royle L, Dwek RA, Rudd PM. “Internal residue loss”: rearrangements occurring during the fragmentation of carbohydrates derivatized at the reducing terminus. Anal Chem. 2002;74(4):734–40.

    CAS  PubMed  Article  Google Scholar 

  31. Hecht ES, Loziuk PL, Muddiman DC. Xylose migration during tandem mass spectrometry of N-linked glycans. J Am Soc Mass Spectrom. 2017;28(4):729–32.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  32. Brüll LP, Kovácik V, Thomas-Oates JE, Heerma W, Haverkamp J. Sodium-cationized oligosaccharides do not appear to undergo ‘internal residue loss’ rearrangement processes on tandem mass spectrometry. Rapid Commun Mass Spectrom. 1998;12(20):1520–32.

    PubMed  Article  Google Scholar 

  33. Ernst B, Müller DR, Richter WJ. False sugar sequence ions in electrospray tandem mass spectrometry of underivatized sialyl-Lewis-type oligosaccharides. Int J Mass Spectrom Ion Process. 1997;160(1):283–90.

    CAS  Article  Google Scholar 

  34. Ma Y-L, Vedernikova I, Van den Heuvel H, Claeys M. Internal glucose residue loss in protonated O-diglycosyl flavonoids upon low-energy collision-induced dissociation. J Am Soc Mass Spectrom. 2000;11(2):136–44.

    CAS  PubMed  Article  Google Scholar 

  35. Brüll LP, Heerma W, Thomas-Oates J, Haverkamp J, Kovácik V, Kovác P. Loss of internal 1 → 6 substituted monosaccharide residues from underivatized and per-O-methylated trisaccharides. J Am Soc Mass Spectrom. 1997;8(1):43–9.

    Article  Google Scholar 

  36. Wuhrer M, Koeleman CAM, Hokke CH, Deelder AM. Mass spectrometry of proton adducts of fucosylated N-glycans: fucose transfer between antennae gives rise to misleading fragments. Rapid Commun Mass Spectrom. 2006;20(11):1747–54.

    CAS  PubMed  Article  Google Scholar 

  37. Franz AH, Lebrilla CB. Evidence for long-range glycosyl transfer reactions in the gas phase. J Am Soc Mass Spectrom. 2002;13(4):325–37.

    CAS  PubMed  Article  Google Scholar 

  38. Mucha E, Lettow M, Marianski M, Thomas DA, Struwe WB, Harvey DJ, et al. Fucose migration in intact protonated glycan ions: a universal phenomenon in mass spectrometry. Angew Chem Int Ed. 2018;57(25):7440–3.

    CAS  Article  Google Scholar 

  39. Pabst M, Kolarich D, Pöltl G, Dalik T, Lubec G, Hofinger A, et al. Comparison of fluorescent labels for oligosaccharides and introduction of a new postlabeling purification method. Anal Biochem. 2009;384(2):263–73.

    CAS  PubMed  Article  Google Scholar 

  40. Royle L, Dwek RA, Rudd PM. Determining the structure of oligosaccharides N- and O-linked to glycoproteins. Curr Protoc Protein Sci. 2006;43(1):12.6.1–6.45.

    Article  Google Scholar 

  41. Mucha E, Gonzalez Florez AI, Marianski M, Thomas DA, Hoffmann W, Struwe WB, et al. Glycan fingerprinting via cold-ion infrared spectroscopy. Angew Chem Int Ed. 2017;56(37):11248–51.

    CAS  Article  Google Scholar 

  42. Varki A, Cummings RD, Aebi M, Packer NH, Seeberger PH, Esko JD, et al. Symbol nomenclature for graphical representations of glycans. Glycobiology. 2015;25(12):1323–4.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  43. Hunter EPL, Lias SG. Evaluated gas phase Basicities and proton affinities of molecules: an update. J Phys Chem Ref Data. 1998;27(3):413–656.

    CAS  Article  Google Scholar 

  44. Re S, Watabe S, Nishima W, Muneyuki E, Yamaguchi Y, MacKerell AD, et al. Characterization of conformational ensembles of protonated N-glycans in the gas-phase. Sci Rep. 2018;8(1):1644.

    PubMed  PubMed Central  Article  CAS  Google Scholar 

  45. O’Flaherty R, Trbojević-Akmačić I, Greville G, Rudd PM, Lauc G. The sweet spot for biologics: recent advances in characterization of biotherapeutic glycoproteins. Expert Rev Proteomics. 2018;15(1):13–29.

    PubMed  Article  CAS  Google Scholar 

  46. Ruhaak LR, Zauner G, Huhn C, Bruggink C, Deelder AM, Wuhrer M. Glycan labeling strategies and their use in identification and quantification. Anal Bioanal Chem. 2010;397(8):3457–81.

    CAS  PubMed  PubMed Central  Article  Google Scholar 

  47. Han L, Costello CE. Mass spectrometry of glycans. Biochem Mosc. 2013;78(7):710–20.

    CAS  Article  Google Scholar 

  48. Warnke S, Seo J, Boschmans J, Sobott F, Scrivens JH, Bleiholder C, et al. Protomers of benzocaine: solvent and permittivity dependence. J Am Chem Soc. 2015;137(12):4236–42.

    CAS  PubMed  Article  Google Scholar 

  49. Nwosu C, Yau HK, Becht S. Assignment of core versus antenna fucosylation types in protein N-glycosylation via procainamide labeling and tandem mass spectrometry. Anal Chem. 2015;87(12):5905–13.

    CAS  PubMed  Article  Google Scholar 

  50. Wuhrer M, Koeleman CAM, Deelder AM. Hexose rearrangements upon fragmentation of N-glycopeptides and reductively aminated N-glycans. Anal Chem. 2009;81(11):4422–32.

    CAS  PubMed  Article  Google Scholar 

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The authors gratefully acknowledge the great expertise of Sandy Gewinner and Dr. Wieland Schöllkopf of the FHI free-electron laser.


Open access funding provided by Max Planck Society. This study was financially supported by the Freie Universität Berlin and the Max Planck Society. DAT acknowledges support from the Alexander von Humboldt Foundation.

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Published in the topical collection Young Investigators in (Bio-)Analytical Chemistry with guest editors Erin Baker, Kerstin Leopold, Francesco Ricci, and Wei Wang.

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Lettow, M., Mucha, E., Manz, C. et al. The role of the mobile proton in fucose migration. Anal Bioanal Chem 411, 4637–4645 (2019).

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  • Fucose migration
  • Internal residue loss
  • Infrared spectroscopy
  • Mass spectrometry
  • Carbohydrates