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Sensitive bioanalysis—combining single-molecule spectroscopy with mono-labeled self-quenching probes

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Abstract

Fluorescence single-molecule spectroscopy is an appropriate tool for modern bioanalysis. This technique enables the development of ultra sensitive assays, especially when combined with self-quenching probes. In this review we report novel DNA, enzyme, and antibody assays based on mono-labeled fluorescent probes that are quenched by photoinduced electron transfer (PET).

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References

  1. Tinnefeld P, Sauer M (2005) Angew Chem Int Ed 44:2642–2671

    Article  CAS  Google Scholar 

  2. Neuweiler H, Sauer M (2005) Anal Chem 77:179A–185A

    Article  Google Scholar 

  3. Greulich KO (2004) Curr Pharm Biotechnol 5:243–259

    Article  CAS  Google Scholar 

  4. Ha T, Enderle T, Ogletree DF, Chemla DS, Selvin PR, Weiss S (1996) Proc Natl Acad Sci USA 93:6264–6268

    Article  CAS  Google Scholar 

  5. Ha T, Ting AY, Liang J, Caldwell WB, Deniz AA, Chemla DS, Schultz PG, Weiss S (1999) Proc Natl Acad Sci USA 96:893–898

    Article  CAS  Google Scholar 

  6. Seisenberger G, Ried MU, Endress T, Büning H, Hallek M, Bräuchle C (2001) Science 294:1929–1932

    Article  CAS  Google Scholar 

  7. Maiti S, Haupts U, Webb WW (1997) Proc Natl Acad Sci USA 94:11753–11757

    Article  CAS  Google Scholar 

  8. Li H, Ying L, Green JJ, Balasubramanian S, Klenerman D (2003) Anal Chem 75:1664–1670

    Article  CAS  Google Scholar 

  9. Castro A, Williams JGK (1997) Anal Chem 69:3915–3920

    Article  CAS  Google Scholar 

  10. Wittwer CT, Herrmann MG, Moss AA, Rasmussen RP (1997) BioTechniques 22:130–138

    CAS  Google Scholar 

  11. Tyagi S, Kramer FR (1996) Nat Biotechnol 14:303–308

    Article  CAS  Google Scholar 

  12. Förster T (1948) Ann Phys 6:55–75

    Article  Google Scholar 

  13. Stryer L, Haugland RP (1967) Proc Natl Acad Sci USA 58:719–726

    Article  CAS  Google Scholar 

  14. Stryer L (1978) Annu Rev Biochem 47:819–846

    Article  CAS  Google Scholar 

  15. Schuler B (2005) ChemPhysChem 6:1206–1220

    Article  CAS  Google Scholar 

  16. Marcus RA, Sutin N (1985) Biochim Biophys Acta 811:265–320

    CAS  Google Scholar 

  17. Rehm D, Weller A (1970) Isr J Chem 8:259–271

    CAS  Google Scholar 

  18. Neuweiler H, Schulz A, Bohmer M, Enderlein J, Sauer M (2003) J Am Chem Soc 125(18):5324–5330

    Article  CAS  Google Scholar 

  19. Seidel CAM, Schulz A, Sauer M (1996) J Phys Chem 100L:5541–5553

    Article  Google Scholar 

  20. Sauer M, Han KT, Ebert V, Müller R, Schulz A, Seeger S, Wolfrum J, Arden-Jacob J, Deltau G, Marx NJ, Zander C, Drexhage KH (1995) J Fluoresc 5:247–261

    Article  CAS  Google Scholar 

  21. Edman L, Mets Ü, Rigler R (1996) Proc Natl Acad Sci U S A 93:6710–6715

    Article  CAS  Google Scholar 

  22. Eggeling C, Fries JR, Brandt L, Günther R, Seidel CAM (1998) Proc Natl Acad Sci U S A 95:1556–1561

    Article  CAS  Google Scholar 

  23. Knemeyer JP, Marmé N, Sauer M (2000) Anal Chem 72:3717–3724

    Article  CAS  Google Scholar 

  24. Heinlein T, Knemeyer JP, Piestert O, Sauer M (2003) J Phys Chem B 107:7957–7964

    Article  CAS  Google Scholar 

  25. Kurata S, Kanagawa T, Yamada K, Torimura M, Yokomaku T, Kamagata Y, Kurane R (2001) Nucleic Acids Res 29:e34

    Article  CAS  Google Scholar 

  26. Piestert O, Barsch H, Buschmann V, Heinlein T, Knemeyer JP, Weston KD, Sauer M (2003) Nano Lett 3:979–982

    Article  CAS  Google Scholar 

  27. Watt RM, Voss EW (1977) Immunochemistry 14:533–541

    Article  CAS  Google Scholar 

  28. Merenyi G, Lind J, Shen X (1988) J Phys Chem 92:134–137

    Article  CAS  Google Scholar 

  29. DeFelippis MR, Murthy CP, Broitman F, Weinraub D, Faraggi M, Klapper MH (1991) J Phys Chem 95:3416–3419

    Article  CAS  Google Scholar 

  30. Buschmann V, Weston KD, Sauer M (2003) Bioconjugate Chem 14:195–204

    Article  CAS  Google Scholar 

  31. Marmé N, Knemeyer JP, Sauer M, Wolfrum J (2003) Bioconjugate Chem 14:1133–1139

    Article  CAS  Google Scholar 

  32. Yang H, Luo GB, Karnchanaphanurach P, Louie TM, Rech I, Cova S, Xun LY, Xie XS (2003) Science 302:262–266

    Article  CAS  Google Scholar 

  33. Zhang CY, Chao SY, Wang TH (2005) Analyst 130:483–488

    Article  CAS  Google Scholar 

  34. Wang TH, Peng Y, Zhang C, Wong PK, Ho CM (2005) J Am Chem Soc 127:5354–5359

    Article  CAS  Google Scholar 

  35. Kasha M (1963) Radiat Res 20:55

    Article  CAS  Google Scholar 

  36. West W, Pearce S (1965) J Phys Chem 69:1894

    Article  CAS  Google Scholar 

  37. Marmé N, Friedrich A, Denapaite D, Hakenbeck R, Knemeyer JP (2006) Chem Phys Lett 428:440–445

    Article  CAS  Google Scholar 

  38. Marmé N, Habl G, Knemeyer JP (2005) Chem Phys Lett 408:221–225

    Article  CAS  Google Scholar 

  39. Knemeyer JP, Marmé N, Häfner B, Habl G, Schäfer G, Müller M, Nolte O, Sauer M, Wolfrum J (2005) Int J Environ An Ch 85:625–637

    Article  CAS  Google Scholar 

  40. Stöhr K, Häfner B, Nolte O, Wolfrum J, Sauer M, Herten DP (2005) Anal Chem 77:7195–7203

    Article  CAS  Google Scholar 

  41. Marmé N, Friedrich A, Müller M, Nolte O, Wolfrum J, Hoheisel JD, Sauer M (2006) Nucleic Acids Res 34:e90

    Article  Google Scholar 

  42. Neuweiler H, Schulz A, Vaiana AC, Smith JC, Kaul S, Wolfrum J, Sauer M (2002) Angew Chem Int Ed 41:4769–4773

    Article  CAS  Google Scholar 

  43. Soussi T (1996) Immunol Today 17:354–356

    Article  CAS  Google Scholar 

  44. Lubin R, Schlichtholz B, Bengoufa D, Zalcman G, Trédaniel J, Hirsch A, Caron de Fromentel C, Preudhomme C, Fenaux P, Fournier G, Mangnin P, Laurent-Puig P, Pelletier G, Schlumberger M, Desgrandchamps F, Le Duc A, Peyrat JP, Janin N, Bressac B, Soussi T (1993) Cancer Res 53:5872–5876

    CAS  Google Scholar 

  45. Hotary KB, Allen ED, Brooks PC, Datta NS, Long MW, Weiss SJ (2003) Cell 114:33–45

    Article  CAS  Google Scholar 

  46. Boire A, Covic L, Agarwal A, Jacques S, Sherifi S, Kuliopulos A (2005) Cell 120:303–313

    Article  CAS  Google Scholar 

  47. Almholt K, Lund LR, Rygaard J, Nielsen BS, Dano K, Romer J, Johnsen M (2004) Int J Cancer 113:525–532

    Article  CAS  Google Scholar 

  48. Fukuda ME, Iwadate Y, Machida T, Hiwasa T, Nimura Y, Nagai Y, Takiguchi M, Tanzawa H, Yamaura A, Seki N (2005) Cancer Res 65:5190–5194

    Article  CAS  Google Scholar 

  49. Packard BZ, Toptygin DD, Komoriya A, Brand L (1996) Proc Natl Acad Sci 83:11640–11645

    Article  Google Scholar 

  50. Packard BZ, Toptygin DD, Komoriya A, Brand L (1997) Biophys Chem 67:167–176

    Article  Google Scholar 

  51. Packard BZ, Komoriya A, Nanda V, Brand L (1998) J Phys Chem B 102(10):1820–1827

    Article  CAS  Google Scholar 

  52. Marmé N, Knemeyer JP, Sauer M, Wolfrum J (2004) Angew Chem Int Ed 43(29):3798–3801, Angew Chem (2004), 116:3886–3890

    Google Scholar 

  53. Staudt TM, Knemeyer L, Kräusslich HG, Knemeyer JP, Marmé N (2005) SPIE Proc 5704:112–119

    Article  Google Scholar 

  54. Staudt TM, Kräusslich HG, Marmé N, Knemeyer JP (2007) Self-quenching peptide substrates for ultra sensitive HIV-protease assays. Int J Environ An Ch, accepted

  55. Marmé N, Staudt TM, Spatz J, Knemeyer JP (2005) Int J Environ An Ch 85:741–751

    Article  CAS  Google Scholar 

  56. Sauer M, Zander C, Müller R, Ullrich B, Drexhage KH, Kaul S, Wolfrum J (1997) Appl Phys B 65:427–431

    Article  CAS  Google Scholar 

Download references

Acknowledgement

The authors would like to thank Professor Dr Markus Sauer and Dr Hannes Neuweiler for providing Figs. 5 and 6 and Professor Dr Jürgen Wolfrum for his support. Julie Fiore is gratefully acknowledged for carefully reading the manuscript.

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Correspondence to Nicole Marmé.

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Marmé, N., Knemeyer, JP. Sensitive bioanalysis—combining single-molecule spectroscopy with mono-labeled self-quenching probes. Anal Bioanal Chem 388, 1075–1085 (2007). https://doi.org/10.1007/s00216-007-1365-1

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  • DOI: https://doi.org/10.1007/s00216-007-1365-1

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