Abstract
Antibiotic-resistant pathogens have become a great universal health concern. Antimicrobial peptides (AMPs) are small amphipathic and cationic polypeptides with high therapeutic potential against various microorganisms containing drug-resistant strains. Two major groups of these peptides, which have antibacterial activity against Gram-positive and Gram-negative bacteria, antiviral activity, and even antifungal activity, are defensins and cathelicidins. Hybridization of various AMPs is an appropriate approach to achieving new fusion AMPs with high antibacterial activity but low cellular toxicity. In the current research, the amino-acid sequence of human cathelicidin LL-37 (2-31) and Human beta-defensin (hBD)-129 were combined, and the fusion protein was evaluated by bioinformatics tool. The designed AMP gene sequence was commercially synthesized and cloned in the pET-28a expression vector. The LL-37/hBD-129 fusion protein was expressed in E.coli BL21-gold (DE3). The expression of the recombinant protein was evaluated using the SDS-PAGE method. The LL37/hBD-129 was successfully expressed as a recombinant hybrid AMP in E.coli BL21-gold (DE3) strain. Purification of the expressed AMP was performed by Ni–NTA column affinity chromatography, and the purified AMP was validated using the Western blot technic. Finally, the antimicrobial activity of the fusion AMP against Staphylococcus aureus and Escherichia coli bacteria was assessed. Based on the in silico analysis and experimental evaluations, the fusion AMP showed a significant antimicrobial effect on E. coli and Staphylococcus aureus bacteria.
Similar content being viewed by others
Data availability
The data used to support the findings of this study are included in the article.
References
Adermann K (2006) Defensins as anti-infective and immunomodulatory agents. Expert Opin Ther Pat 16(9):1223–1234
Afacan NJ, Yeung ATY, Pena OM, Hancock REW (2012) Therapeutic potential of host defense peptides in antibiotic-resistant infections. Curr Pharm Des 18(6):807–19
Al Tall Y, Abualhaijaa A, Alsaggar M, Almaaytah A, Masadeh M, Alzoubi KH (2019) Design and characterization of a new hybrid peptide from LL-37 and BMAP-27. Infect Drug Resist 12:1035
Bechinger B, Gorr S-U (2017) Antimicrobial peptides: mechanisms of action and resistance. J Dent Res 96(3):254–260
Boman H, Wade D, Boman I, Wåhlin B, Merrifield R (1989) Antibacterial and antimalarial properties of peptides that are cecropin-melittin hybrids. FEBS Lett 259(1):103–106
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72(1–2):248–254
Brogden KA (2005) Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria? Nat Rev Microbiol 3(3):238–250
Carretero M, Escámez MJ, García M, Duarte B, Holguín A, Retamosa L et al (2008) In vitro and in vivo wound healing-promoting activities of human cathelicidin LL-37. J Investig Dermatol 128(1):223–236
Ciornei CD, Sigurdardóttir T, Schmidtchen A, Bodelsson M (2005) Antimicrobial and chemoattractant activity, lipopolysaccharide neutralization, cytotoxicity, and inhibition by serum of analogs of human cathelicidin LL-37. Antimicrob Agents Chemother 49(7):2845–2850
Cobo ER, Chadee K (2013) Antimicrobial human β-defensins in the colon and their role in infectious and non-infectious diseases. Pathogens 2(1):177–192
Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG (1995) A smooth particle mesh Ewald method. J Chem Phys 103(19):8577–8593
Fellermann K, Stange EF (2001) Defensins–innate immunity at the epithelial frontier. Eur J Gastroenterol Hepatol 13(7):771–776
Francis DM, Page R (2010) Strategies to optimize protein expression in E. coli. Curr Protoc Protein Sci. https://doi.org/10.1002/0471140864.ps0524s61
Gong G-L, Wei Y, Wang Z-Z (2018) Functional expression, purification, and antimicrobial activity of a novel antimicrobial peptide MLH in Escherichia coli. Prep Biochem Biotechnol 48(1):57–63
Gordon JC, Myers JB, Folta T, Shoja V, Heath LS, Onufriev A (2005) H++: a server for estimating p K as and adding missing hydrogens to macromolecules. Nucleic Acids Res 33(suppl_2):W368–W371
Gudmundsson GH, Agerberth B, Odeberg J, Bergman T, Olsson B, Salcedo R (1996) The human gene FALL39 and processing of the cathelin precursor to the antibacterial peptide LL-37 in granulocytes. Eur J Biochem 238(2):325–332
Han JE, Alvarez JA, Jones JL, Tangpricha V, Brown MA, Hao L et al (2017) Impact of high-dose vitamin D3 on plasma free 25-hydroxyvitamin D concentrations and antimicrobial peptides in critically ill mechanically ventilated adults. Nutrition 38:102–108
Hess B, Bekker H, Berendsen HJ, Fraaije JG (1997) LINCS: a linear constraint solver for molecular simulations. J Comput Chem 18(12):1463–1472
Huang J, MacKerell AD Jr (2013) CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data. J Comput Chem 34(25):2135–2145
Jenssen H, Hamill P, Hancock RE (2006) Peptide antimicrobial agents. Clin Microbiol Rev 19(3):491–511
Jo S, Kim T, Iyer VG, Im W (2008) CHARMM-GUI: a web-based graphical user interface for CHARMM. J Comput Chem 29(11):1859–1865
Kim S-j, Quan R, Lee S-J, Lee H-K, Choi J-K (2009) Antibacterial activity of recombinant hCAP18/LL37 protein secreted from Pichia pastoris. J Microbiol 47(3):358–362
Kim DS, Kim SW, Song JM, Kim SY, Kwon K-C (2019) A new prokaryotic expression vector for the expression of antimicrobial peptide abaecin using SUMO fusion tag. BMC Biotechnol 19(1):1–12
Kim H, Jang JH, Kim SC, Cho JH (2020) Development of a novel hybrid antimicrobial peptide for targeted killing of Pseudomonas aeruginosa. Eur J Med Chem 185:111814
Koo HB, Seo J (2019) Antimicrobial peptides under clinical investigation. Pept Sci 111(5):e24122
Kustanovich I, Shalev DE, Mikhlin M, Gaidukov L, Mor A (2002) Structural requirements for potent versus selective cytotoxicity for antimicrobial dermaseptin S4 derivatives* 210. J Biol Chem 277(19):16941–16951
Lee J, Jung SW, Cho AE (2016) Molecular insights into the adsorption mechanism of human β-defensin-3 on bacterial membranes. Langmuir 32(7):1782–1790
Lehmann J, Retz M, Harder J, Krams M, Kellner U, Hartmann J et al (2002) Expression of human beta-defensins 1 and 2 in kidneys with chronic bacterial infection. BMC Infect Dis 2(1):1–10
Li X, Li Y, Han H, Miller DW, Wang G (2006) Solution structures of human LL-37 fragments and NMR-based identification of a minimal membrane-targeting antimicrobial and anticancer region. J Am Chem Soc 128(17):5776–5785
Liu F, Wu J, Ying G-G, Luo Z, Feng H (2012) Changes in functional diversity of soil microbial community with addition of antibiotics sulfamethoxazole and chlortetracycline. Appl Microbiol Biotechnol 95(6):1615–1623
Liu Z, Zhu M, Chen X, Yang G, Yang T, Yu L et al (2018) Expression and antibacterial activity of hybrid antimicrobial peptide cecropinA-thanatin in Pichia pastoris. Front Lab Med 2(1):23–29
Magana M, Pushpanathan M, Santos AL, Leanse L, Fernandez M, Ioannidis A et al (2020) The value of antimicrobial peptides in the age of resistance. Lancet Infect Dis 20(9):e216–e230
Martyna GJ, Klein ML, Tuckerman M (1992) Nosé-Hoover chains: the canonical ensemble via continuous dynamics. J Chem Phys 97(4):2635–2643
Moon J-Y, Henzler-Wildman KA, Ramamoorthy A (2006) Expression and purification of a recombinant LL-37 from Escherichia coli. Biochim Biophys Acta (BBA) Biomembr 1758(9):1351–1358
Nishimura A, Morita M, Nishimura Y, Sugino Y (1990) A rapid and highly efficient method for preparation of competent Escherichia coli cells. Nucleic Acids Res 18(20):6169
Niyonsaba F, Kiatsurayanon C, Chieosilapatham P, Ogawa H (2017) Friends or foes? Host defense (antimicrobial) peptides and proteins in human skin diseases. Exp Dermatol 26(11):989–998
Pane K, Cafaro V, Avitabile A, Torres MDT, Vollaro A, De Gregorio E et al (2018) Identification of novel cryptic multifunctional antimicrobial peptides from the human stomach enabled by a computational–experimental platform. ACS Synth Biol 7(9):2105–2115
Pazgier M, Hoover D, Yang D, Lu W, Lubkowski J (2006) Human β-defensins. Cell Mol Life Sci CMLS 63(11):1294–1313
Rodriguez A, Pedersen MØ, Villegas E, Rivas-Santiago B, Villegas-Moreno J, Amero C et al (2020) Antimicrobial activity and structure of a consensus human β-defensin and its comparison to a novel putative hBD10. Proteins: Struct Funct Bioinform 88(1):175–186
Roux B, Simonson T (1999) Implicit solvent models. Biophys Chem 78(1–2):1–20
Sørensen O, Arnljots K, Cowland JB, Bainton DF, Borregaard N (1997) The human antibacterial cathelicidin, hCAP-18, is synthesized in myelocytes and metamyelocytes and localized to specific granules in neutrophils. Blood, J Am Soc Hematol 90(7):2796–2803
Spriestersbach A, Kubicek J, Schäfer F, Block H, Maertens B (2015) Purification of his-tagged proteins. Methods in enzymology, vol 559. Elsevier, pp 1–15
Suarez-Carmona M, Hubert P, Delvenne P, Herfs M (2015) Defensins:“simple” antimicrobial peptides or broad-spectrum molecules? Cytokine Growth Factor Rev 26(3):361–370
Sugiarto H, Yu P-L (2004) Avian antimicrobial peptides: the defense role of β-defensins. Biochem Biophys Res Commun 323(3):721–727
Thomson JM, Bonomo RA (2005) The threat of antibiotic resistance in gram-negative pathogenic bacteria: β-lactams in peril! Curr Opin Microbiol 8(5):518–524
Valore EV, Park CH, Quayle AJ, Wiles KR, McCray P, Ganz T (1998) Human beta-defensin-1: an antimicrobial peptide of urogenital tissues. J Clin Investig 101(8):1633–1642
Van Der Spoel D, Lindahl E, Hess B, Groenhof G, Mark AE, Berendsen HJ (2005) GROMACS: fast, flexible, and free. J Comput Chem 26(16):1701–1718
Vandamme D, Landuyt B, Luyten W, Schoofs L (2012) A comprehensive summary of LL-37, the factotum human cathelicidin peptide. Cell Immunol 280(1):22–35
Wang G (2008) Structures of human host defense cathelicidin LL-37 and its smallest antimicrobial peptide KR-12 in lipid micelles. J Biol Chem 283(47):32637–32643
Wang G, Narayana JL, Mishra B, Zhang Y, Wang F, Wang C et al (2019) Design of antimicrobial peptides: progress made with human cathelicidin LL-37. Antimicrob Pept 2019:215–240
Wanmakok M, Orrapin S, Intorasoot A, Intorasoot S (2018) Expression in Escherichia coli of novel recombinant hybrid antimicrobial peptide AL32-P113 with enhanced antimicrobial activity in vitro. Gene 671:1–9
Watkins RR, Bonomo RA (2016) Overview: global and local impact of antibiotic resistance. Infect Dis Clin 30(2):313–322
Wei X, Wu R, Zhang L, Ahmad B, Si D, Zhang R (2018) Expression, purification, and characterization of a novel hybrid peptide with potent antibacterial activity. Molecules 23(6):1491
Wiegand I, Hilpert K, Hancock RE (2008) Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances. Nat Protoc 3(2):163–175
Winter J, Wenghoefer M (2012) Human defensins: potential tools for clinical applications. Polymers 4(1):691–709
Wu R, Wang Q, Zheng Z, Zhao L, Shang Y, Wei X et al (2014) Design, characterization and expression of a novel hybrid peptides melittin (1–13)-LL37 (17–30). Mol Biol Rep 41(7):4163–4169
Xie K, Xie H, Su G, Chen D, Yu B, Mao X et al (2019) β-Defensin 129 attenuates bacterial endotoxin-induced inflammation and intestinal epithelial cell apoptosis. Front Immunol. https://doi.org/10.2139/ssrn.3377507
Yang D, Biragyn A, Kwak LW, Oppenheim JJ (2002) Mammalian defensins in immunity: more than just microbicidal. Trends Immunol 23(6):291–296
Zasloff M (2002) Antimicrobial peptides in health and disease. Mass Med Soc 347:1199–1200
Acknowledgements
This study has been written by the authors.
Funding
The study was financially supported by Fasa University of Medical Sciences (Project Number:99094) and was approved by the Ethical Committee of Fasa University of Medical Sciences (IR.FUMS.REC.1399.137).
Author information
Authors and Affiliations
Contributions
MA and SHM conceived and designed the research. MA, SHM, MHY, and SSHSH conducted experiments. MA, EB contributed analytical tools. All authors wrote the manuscript and approved it.
Corresponding author
Ethics declarations
Conflict of interest
None to declare.
Additional information
Communicated by Yusuf Akhter.
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Abbasi, M., Behmard, E., Yousefi, M.H. et al. Expression, purification and investigation of antibacterial activity of a novel hybrid peptide LL37/hBD-129 by applied comprehensive computational and experimental approaches. Arch Microbiol 205, 199 (2023). https://doi.org/10.1007/s00203-023-03529-5
Received:
Revised:
Accepted:
Published:
DOI: https://doi.org/10.1007/s00203-023-03529-5