Abstract
Bacillus thuringiensis (Bt) is a biological alternative to the indiscriminate use of chemical insecticides in agriculture. Due to resistance development on insect pests to Bt crops, isolating novel Bt strains is a strategy for screening new pesticidal proteins or strains containing toxin profile variety that can delay resistance. Besides, the combined genomic and proteomic approaches allow identifying pesticidal proteins and virulence factors accurately. Here, the genome of a novel Bt strain (Bt TOL651) was sequenced, and the proteins from the spore–crystal mixture were identified by proteomic analysis. Toxicity bioassays with the spore–crystal mixture against larvae of Diatraea saccharalis and Anticarsia gemmatalis, key pests of sugarcane and soybean, respectively, were performed. The toxicity of Bt TOL651 varies with the insect; A. gemmatalis (LC50 = 1.45 ng cm−2) is more susceptible than D. saccharalis (LC50 = 73.77 ng cm−2). Phylogenetic analysis of the gyrB gene indicates that TOL651 is related to Bt kenyae strains. The genomic analysis revealed the presence of cry1Aa18, cry1Ac5, cry1Ia44, and cry2Aa9 pesticidal genes. Virulence factor genes such as phospholipases (plcA, piplc), metalloproteases (inhA), hemolysins (cytK, hlyIII, hblA, hblC, hblD), and enterotoxins (nheA, nheB, nheC) were also identified. The combined use of the genomic and proteomic data indicated the expression of Cry1Aa18, Cry1Ac5, and Cry2Aa9 proteins, with Cry1Ac5 being the most abundant. InhA1 also was expressed and may contribute to Bt TOL651 pathogenicity. These results provide Bt TOL651 as a new tool for the biocontrol of lepidopteran pests.
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References
Alcock BP, Huynh W, Chalil R, Smith KW, Raphenya AR, Wlodarski MA, McArthur AG (2023) CARD 2023: expanded curation, support for machine learning, and resistome prediction at the comprehensive antibiotic resistance database. Nucleic Acids Res 51:D690–D699
Andrews S (2015) FastQC: a quality-control tool for high-throughput sequence. Retrieved October from https://www.bioinformatics.babraham.ac.uk/projects/fastqc. Accessed 18 June 2020
Arthur S, Dara SK (2019) Microbial biopesticides for invertebrate pests and their markets in the United States. J Invertebr Pathol 165:13–21. https://doi.org/10.1016/j.jip.2018.01.008
Banik A, Chattopadhyay A, Ganguly S, Mukhopadhyay SK (2019) Characterization of a tea pest specific Bacillus thuringiensis and identification of its toxin by MALDI-TOF mass spectrometry. Ind Crops Prod 137:549–556. https://doi.org/10.1016/j.indcrop.2019.05.051
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, Alekseyev MA, Pevzner PA (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477. https://doi.org/10.1089/cmb.2012.0021
Baragamaarachchi RY, Samarasekera JK, Weerasena OV, Lamour K, Jurat-Fuentes JL (2019) Identification of a native Bacillus thuringiensis strain from Sri Lanka active against Dipel-resistant Plutella xylostella. PeerJ 7:e7535. https://doi.org/10.7717/peerj.7535
Bel Y, Sheets JJ, Tan SY, Narva KE, Escriche B (2017) Toxicity and binding studies of Bacillus thuringiensis Cry1Ac, Cry1F, Cry1C, and Cry2A proteins in the soybean pests Anticarsia gemmatalis and Chrysodeixis (Pseudoplusia) includens. Appl Environ Microbiol 83:e00326-e317. https://doi.org/10.1128/AEM.00326-17
Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M (2015) MeDuSa: a multi-draft based scaffolder. Bioinformatics 31:2443–2451. https://doi.org/10.1093/bioinformatics/btv171
Bravo A, Gill SS, Soberón M (2007) Mode of action of Bacillus thuringiensis cry and cyt toxins and their potential for insect control. Toxicon 49:423–435. https://doi.org/10.1016/j.toxicon.2006.11.022
Bravo A, Likitvivatanavong S, Gill SS, Soberón M (2011) Bacillus thuringiensis: a story of a successful bioinsecticide. Insect Biochem Mol Biol 41:423–431. https://doi.org/10.1016/j.ibmb.2011.02.006
Brettin T, Davis JJ, Disz T, Edwards RA, Gerdes S, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomason JA, Stevens R, Vonstein V, Wattam AR, Xia F (2015) RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. Sci Rep 5:8365. https://doi.org/10.1038/srep08365
Caballero J, Jiménez-Moreno N, Orera I, Williams T, Fernández AB, Villanueva M, Ferré J, Caballero P, Ancín-Azpilicueta C (2020) Unraveling the composition of insecticidal crystal proteins in Bacillus thuringiensis: a proteomics approach. Appl Environ Microbiol 86:e00476-e520. https://doi.org/10.1128/AEM.00476-20
Cardoso P, Fazion F, Perchat S, Buisson C, Vilas-Bôas G, Lereclus D (2020) Rap-Phr systems from plasmids pAW63 and pHT8–1 act together to regulate sporulation in the Bacillus thuringiensis serovar kurstaki HD73 strain. Appl Environ Microbiol 86:e01238-e1220. https://doi.org/10.1128/AEM.01238-20
Castro BMdC, Martinez LC, Barbosa SG, Serrão JE, Wilcken CF, Soares MA, da Silva AA, de Carvalho AG, Zanuncio JC (2019) Toxicity and cytopathology mediated byBacillus thuringiensis in the midgut of Anticarsia gemmatalis (Lepidoptera: Noctuidae). Sci Rep 9:6667. https://doi.org/10.1038/s41598-019-430740
Cerqueira FB, Alves GB, Corrêa RFT, Martins ES, Barbosa LCB, do Nascimento IR, Aguiar RDS (2016) Selection and characterization of Bacillus thuringiensis isolates with a high insecticidal activity against Spodoptera frugiperda (Lepidoptera: Noctuidae). Biosci J 32:1522–1536
Chang JH, Je YH, Roh JY, Park HW, Jin BR, Lee DW, Kim S-H, Yang-W KSK (1999) Isolation and characterization of a strain of Bacillus thuringiensis serovar kenyae encoding olny δ-endotoxin Cry1E. Appl Entomol Zool 34:379–382. https://doi.org/10.1303/aez.34.379
Chung MC, Popova TG, Millis BA, Mukherjee DV, Zhou W, Liotta LA, Petricoin EF, Chandhoke V, Bailey C, SG P (2006) Secreted neutral metalloproteases of Bacillus anthracis as candidate pathogenic factors. J Biol Chem 281:31408–31418. https://doi.org/10.1016/S0021-9258(19)84053-X
da Silva SM, Silva-Werneck JO, Falcão R, Gomes AC, Fragoso RR, Quezado MT, Neto OB, Aguiar JB, de Sá MF, Bravo A, Monnerat RG (2004) Characterization of novel Brazilian Bacillus thuringiensis strains active against Spodoptera frugiperda and other insect pests. J Appl Entomol 128:102–107. https://doi.org/10.1046/j.1439-0418.2003.00812.x
da Silva IHS, de Freitas MM, Polanczyk RA (2022) Bacillus thuringiensis, a remarkable biopesticide: from lab to the field. In: Rakshit A, Meena VS, Abhilash PC, Sarma BK, Singh HB, Fraceto L, Parihar M, Singh AK (eds) Biopesticides. Woodhead Publishing, Cambridge, pp 117–131. https://doi.org/10.1016/B978-0-12-823355-9.00021-3
Dammak I, Dammak M, Tounsi S (2015) Histopathological and combinatorial effects of the metalloprotease InhA1 and Cry proteins of Bacillus thuringiensis against Spodoptera littoralis. Int J Biol Macromol 81:759–762. https://doi.org/10.1016/j.ijbiomac.2015.09.006
Daquila BV, Scudeler EL, Dossi FC, Moreira DR, Pamphile JA, Conte H (2019) Action of Bacillus thuringiensis (Bacillales: Bacillaceae) in the midgut of the sugarcane borer Diatraea saccharalis (Fabricius, 1794) (Lepidoptera: Crambidae). Ecotoxicol Environ Saf 184:109642. https://doi.org/10.1016/j.ecoenv.2019.109642
Davolos CC, Hernández-Martinez P, Crialesi-Legori PC, Desidério JA, Ferré J, Escriche B, Lemos MV (2015) Binding analysis of Bacillus thuringiensis Cry1 proteins in the sugarcane borer, Diatraea saccharalis (Lepidoptera: Crambidae). J Invertebr Pathol 127:32–34. https://doi.org/10.1016/j.jip.2015.01.013
Day M, Ibrahim M, Dyer D, Bulla L (2014) Genome sequence of Bacillus thuringiensis subsp. kurstaki strain HD-1. Genome Announc 2:e00613-00614. https://doi.org/10.1128/genomeA.00613-14
de Matos M, Santos F, Eichler P (2020) Chapter 1—Sugarcane world scenario. In: Santos F, Rabelo SC, De Matos M, Eichler P (eds) Sugarcane biorefinery, technology and perspectives. Academic Press, Cambridge, pp. 1–19. https://doi.org/10.1016/B978-0-12-814236-3.00001-9
de Oliveira WS, Sakuno CIR, Miraldo LL, Tavares MA, Komada KM, Teresani D, Santos JL, Huang F (2022) Varied frequencies of resistance alleles to Cry1Ab and Cry1Ac among Brazilian populations of the sugarcane borer, Diatraea saccharalis (F.). Pest Manage Sci 1:14. https://doi.org/10.1002/ps.7133
Dinardo-Miranda LL, Fracasso JV, Da Costa VP, Dos Anjos IA, Lopes DOP (2013) Reação de cultivares de cana-de-açúcar à broca do colmo. Bragantia Campinas 72:29–34
Ding X, Huang J, Xia L, Li X, Yuan C, Dan S (2009) A proteomic analysis approach to study insecticidal crystal proteins from different strains of Bacillus thuringiensis. Biocontrol Sci Technol 19:289–299. https://doi.org/10.1080/09583150902749984
dos Santos KB, Neves P, Meneguim AM, dos Santos RB, dos Santos WJ, Boas GV, Dumas V, Martins E, Praça LB, Queiroz P, Berry C, Monnerat R (2009) Selection and characterization of the Bacillus thuringiensis strains toxic to Spodoptera eridania (Cramer), Spodoptera cosmioides (Walker) and Spodoptera frugiperda (Smith) (Lepidoptera: Noctuidae). Biol Control 50:157–163. https://doi.org/10.1016/j.biocontrol.2009.03.014
Dulmage HTB (1973) Thuringiensis US assay standard: report on the adoption of a primary US reference standard for assay of formulations containing the delta-endotoxin of Bacillus thuringiensis. Bull Entomol Soc Am 19:200–202
Finney DJ (1971) Probit analysis. Cambridge University Press, Cambridge
Frankenhuyzen KV (2009) Insecticidal activity of Bacillus thuringiensis crystal proteins. J Invertebr Pathol 101:1–16. https://doi.org/10.1016/j.jip.2009.02.009
Frankland GC, Frankland PF (1887) XI. Studies on some new micro-organisms obtained from air. Philos Trans R Soc B 178:257–287. https://doi.org/10.1098/rstb.1887.0011
Ganesh KN, Reyaz A, Balakrishnan N (2018) Molecular characterization of an indigenous lepidopteran toxic Bacillus thuringiensis strain T532. J Biol Control 32:246–251. https://doi.org/10.18311/jbc/2018/21604
Gleave AP, Williams R, Hedges RJ (1993) Screening by polymerase chain reaction of Bacillus thuringiensis serotypes for the presence of cryV-like insecticidal protein genes and characterization of a cryV gene cloned from B. thuringiensis subsp. kurstaki. Appl Environ Microbiol 59:1683–1687. https://doi.org/10.1128/aem.59.5.1683-1687.1993
Gomis-Cebolla J, Scaramal Ricietto AP, Ferré J (2018) A genomic and proteomic approach to identify and quantify the expressed Bacillus thuringiensis proteins in the supernatant and parasporal crystal. Toxins (basel) 10:193. https://doi.org/10.3390/toxins10050193
Greene GL, Leppla NC, Dickerson WA (1976) Velvetbean caterpillar: a rearing procedure and artificial medium. J Econ Entomol 69:487–488. https://doi.org/10.1093/jee/69.4.487
Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29:1072–1075. https://doi.org/10.1093/bioinformatics/btt086
Heinrichs R, Otto R, Magalhães A, Meirelles GC (2017) Importance of sugarcane in Brazilian and world bioeconomy. In: Dabbert S, Lewandowski I, Weiss J, Pyka A (eds) Knowledge-driven developments in the bioeconomy: technological and economic perspectives. Springer International Publishing, Cham, pp 205–217. https://doi.org/10.1007/978-3-319-58374-7_11
Helgason E, Økstad OA, Caugant DA, Johansen HA, Fouet A, Mock M, Hegna I, Kolstø A (2000) Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis; one Ssecies on the basis of genetic evidence. Appl Environ Microbiol 66:2627–2630. https://doi.org/10.1128/AEM.66.6.2627-2630.2000
Hensley SD, Hammond AM Jr (1968) Laboratory techniques for rearing the sugarcane borer on an artificial diet. J Econ Entomol 61:1742–1743. https://doi.org/10.1093/jee/61.6.1742
Hernández-Rodríguez CS, Hernández-Martínez P, Van Rie J, Escriche B, Ferré J (2013) Shared midgut binding sites for Cry1A. 105, Cry1Aa, Cry1Ab, Cry1Ac and Cry1Fa proteins from Bacillus thuringiensis in two important corn pests, Ostrinia nubilalis and Spodoptera frugiperda. PLoS ONE 8:e68164. https://doi.org/10.1371/journal.pone.0068164
Hire RS, Makde RD, Dongre TK, D’souza SF (2008) Characterization of the cry1Ac17 gene from an indigenous strain of Bacillus thuringiensis subsp. kenyae. Curr Microbiol 57:570–574. https://doi.org/10.1007/s00284-008-9244-3
Hire RS, Makde RD, Dongre TK, D’souza SF (2009) Expression, purification and characterization of the Cry2Aa14 toxin from Bacillus thuringiensis subsp. kenyae. Toxicon 54:519–524. https://doi.org/10.1016/j.toxicon.2009.05.022
Hongyu Z, Ziniu Y, Wangxi D (2000) Composition and ecological distribution of cry proteins and their genotypes of Bacillus thuringiensis isolates from warehouses in China. J Invertebr Pathol 76:191–197. https://doi.org/10.1006/jipa.2000.4970
Horikoshi RJ, Ferrari G, Dourado PM, Climaco JI, Vertuan HV, Evans A, Pleau M, Morrell K, José MO, Anderson H, Martinelli S, Ovejero RF, Berger GU, Head G (2022) MON 95379 Bt maize as a new tool to manage sugarcane borer (Diatraea saccharalis) in South America. Pest Manag Sci 78:3456–3466. https://doi.org/10.1002/ps.6986
Huang S, Ding X, Sun Y, Yang Q, Xiao X, Cao Z, Xia L (2012) Proteomic analysis of Bacillus thuringiensis at different growth phases by using an automated online two-dimensional liquid chromatography-tandem mass spectrometry strategy. Appl Environ Microbiol 78:5270–5279. https://doi.org/10.1128/AEM.00424-12
Huang F, Chen M, Gowda A, Clark TL, McNulty BC, Yang F, Niu Y (2015) Identification, inheritance, and fitness costs of Cry2Ab2 resistance in a field-derived population of sugarcane borer, Diatraea saccharalis (F.) (Lepidoptera: Crambidae). J Invertebr Pathol 130:116–123. https://doi.org/10.1016/j.jip.2015.07.007
Jeong H, Choi SK, Park SH (2017) Genome sequences of Bacillus thuringiensis Serovar kurstaki strain BP865 and B. thuringiensis, Serovar aizawai strain HD-133. Genome Announ 5:e01544-e1516. https://doi.org/10.1128/genomeA.01544-16
Jia N, Ding MZ, Gao F, Yuan YJ (2016) Comparative genomics analysis of the companion mechanisms of Bacillus thuringiensis Bc601 and Bacillus endophyticus Hbe603 in bacterial consortium. Sci Rep 6:28794. https://doi.org/10.1038/srep28794
Kalfon A, Larget-Thiéry I, Charles JF, Barjac H (1983) Growth, sporulation and larvicidal activity of Bacillus sphaericus. Appl Microbiol Biotechnol 18:68–173. https://doi.org/10.1007/BF00498040
Kaze M, Brooks L, Sistrom M (2021) Antibiotic resistance in Bacillus-based biopesticide products. bioRxiv. https://doi.org/10.1101/2021.03.15.435560
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A (2012) Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649. https://doi.org/10.1093/bioinformatics/bts199
Khorramnejad A, Gomis-Cebolla J, Talaei-Hassanlouei R, Bel Y, Escriche B (2020) Genomics and proteomics analyses revealed novel candidate pesticidal proteins in a lepidopteran-toxic Bacillus thuringiensis strain. Toxins (basel) 12:673. https://doi.org/10.3390/toxins12110673
Kim MJ, Han JK, Park JS, Lee JS, Lee SH, Cho JI, Kim KS (2015) Various enterotoxin and other virulence factor genes widespread among Bacillus cereus and Bacillus thuringiensis strains. J Microbiol Biotechnol 25:872–879. https://doi.org/10.4014/jmb.1502.02003
Konecka E, Baranek J, Kaznowski A, Ziemnicka J, Ziemnicki K (2012) Interaction between crystalline proteins of two Bacillus thuringiensis strains against Spodoptera exigua. Entomol Exp Appl 143:148–154. https://doi.org/10.1111/j.1570-7458.2012.01254.x
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547. https://doi.org/10.1093/molbev/msy096
Lacey LA, Grzywacz D, Shapiro-Ilan DI, Frutos R, Brownbridge M, Goettel MS (2015) Insect pathogens as biological control agents: back to the future. J Invertebr Pathol 132:1–41. https://doi.org/10.1016/j.jip.2015.07.009
Lazarte JN, Valacco MP, Moreno S, Salerno GL, Berón CM (2021) Molecular characterization of a Bacillus thuringiensis strain from Argentina, toxic against Lepidoptera and Coleoptera, based on its whole-genome and cry protein analysis. J Invertebr Pathol 183:107563. https://doi.org/10.1016/j.jip.2021.107563
Lechuga A, Lood C, Salas M, Van Noort V, Lavigne R, Redrejo-Rodríguez M (2020) Completed Genomic Sequence of Bacillus thuringiensis HER1410 reveals a Cry-containing chromosome, two megaplasmids, and an integrative plasmidial prophage. G3 Genes|genom|genet 10:2927–2939. https://doi.org/10.1534/g3.120.401361
Li X, Ding X, Xia L, Sun Y, Yuan C, Yin J (2012) Proteomic analysis of Bacillus thuringiensis strain 4.0718 at different growth phases. Sci World J. https://doi.org/10.1100/2012/798739
Liu X, Zuo M, Wang T, Sun Y, Liu S, Hu S, He H, Yang Q, Rang J, Quan M, Xia L, Ding X (2015) Proteomic analysis of the influence of Cu2+ on the crystal protein production of Bacillus thuringiensis X022. Microb Cell Factories 14:153. https://doi.org/10.1186/s12934-015-0339-9
Liu J, Li L, Peters BM, Li B, Chen D, Xu Z, Shirtliff ME (2017) Complete genome sequence and bioinformatics analyses of Bacillus thuringiensis strain BM-BT15426. Microb Pathog 108:55–60. https://doi.org/10.1016/j.micpath.2017.05.006
Liu B, Zheng D, Jin Q, Chen L, Yang J (2019) VFDB 2019: a comparative pathogenomic platform with an interactive web interface. Nucleic Acids Res 47:D687–D692. https://doi.org/10.1093/nar/gky1080
Liu H, Zheng J, Bo D, Yu Y, Ye W, Peng D, Sun M (2021) BtToxin_Digger: a comprehensive and high-throughput pipeline for mining toxin protein genes from Bacillus thuringiensis. Bioinformatics 38:250–251. https://doi.org/10.1093/bioinformatics/btab506
Luna VA, King DS, Gulledge J, Cannons AC, Amuso PT, Cattani J (2007) Susceptibility of Bacillus anthracis, Bacillus cereus, Bacillus mycoides, Bacillus pseudomycoides and Bacillus thuringiensis to 24 antimicrobials using Sensititre® automated microbroth dilution and Etest® agar gradient diffusion methods. J Antimicrob Chemothe 60:555–567. https://doi.org/10.1093/jac/dkm213
Ma W, Chen H, Jiang X, Wang J, Gelbič I, Guan X, Zhang L (2020) Whole genome sequence analysis of the mosquitocidal Bacillus thuringiensis LLP29. Arch Microbiol 202:1693–1700. https://doi.org/10.1007/s00203-020-01875-2
Macedo CL, Martins ÉS, Macedo LL, Santos AC, Praça LB, Góis LA, Monnerat RG (2012) Seleção e caracterização de estirpes de Bacillus thuringiensis eficientes contra a Diatraea saccharalis (Lepidoptera: Crambidae). Pesq Agropecu Bras 47:1759–1765. https://doi.org/10.1590/S0100-204X2012001200012
Malovichko YV, Nizhnikov AA, Antonets KS (2019) Repertoire of the Bacillus thuringiensis virulence factors unrelated to major classes of protein toxins and its role in specificity of host-pathogen interactions. Toxins (Basel) 11:347. https://www.mdpi.com/2072-6651/11/6/347
Mendonça EG, de Almeida BR, Cordeiro G, da Silva CR, Campos WG, de Oliveira JA, de Almeida Oliveira MG (2020) Larval development and proteolytic activity of Anticarsia gemmatalis Hübner (Lepidoptera: Noctuidae) exposed to different soybean protease inhibitors. Arch Insect Biochem Physiol 103:e21637. https://doi.org/10.1002/arch.21637
Miyoshi S, Shinoda S (2000) Microbial metalloproteases and pathogenesis. Microb Infect 2:91–98. https://doi.org/10.1016/S1286-4579(00)00280-X
Monnerat RG, Silva SF, Silva-Werneck JO (2001) Catálogo do banco de germoplasma de bactérias do gênero Bacillus. Embrapa Recursos Genéticos e Biotecnologia, Brasília, p 65 (Embrapa Recursos Gene´ticos e Biotecnologia. Documentos, 60)
Monnerat RG, Batista AC, de Medeiros PT, Martins ÉS, Melatti VM, Praça LB, Dumas VF, Morinaga C, Demo C, Gomes ACM, Falcão R, Siqueira CB, Silva-Werneck JO, Berry C (2007) Screening of Brazilian Bacillus thuringiensis isolates active against Spodoptera frugiperda, Plutella xylostella and Anticarsia gemmatalis. Biol Control 41:291–295. https://doi.org/10.1016/j.biocontrol.2006.11.008
Moscardi F, Corrêa-Ferreira BS, Corso IC (2012) Pragas que atacam plântulas, hastes e pecíolos da soja. In: Hoffmann CB, Corrêa-Ferreira BS, Moscardi F (eds) Soja: manejo integrado de insetos e outros artrópodes-praga. Embrapa, Brasília, pp 145–168
Mounsef JR, Salameh D, kallassy Awad M, Chamy L, Brandam C, Lteif R (2014) A simple method for the separation of Bacillus thuringiensis spores and crystals. J Microbiol Methods 107:147–149. https://doi.org/10.1016/j.mimet.2014.10.003
Palma L, Muñoz D, Berry C, Murillo J, Caballero P (2014) Bacillus thuringiensis Toxins: an overview of their biocidal activity. Toxins (Basel) 6:3296–3325. https://www.mdpi.com/2072-6651/6/12/3296
Pezenti LF, Sosa-Gómez DR, de Souza RF, Vilas-Boas LA, Gonçalves KB, da Silva CR, Vilas-Bôas GT, Baranoski A, Mantovani MS, da Rosa R (2021) Transcriptional profiling analysis of susceptible and resistant strains of Anticarsia gemmatalis and their response to Bacillus thuringiensis. Genomics 113:2264–2275. https://doi.org/10.1016/j.ygeno.2021.05.012
Pinheiro DH, Valicente FH (2021) Identification of Bacillus thuringiensis strains for the management of lepidopteran pests. Neotrop Entomol 50:804–811. https://doi.org/10.1007/s13744-021-00896-w
Pohare MB, Wagh SG, Udayasuriyan V (2021) Bacillus thuringiensis as potential biocontrol agent for sustainable agriculture. In: Yadav AN, Singh J, Singh C, Yadav N (eds) Current trends in microbial biotechnology for sustainable agriculture. Springer Singapore, Singapore, pp 439–468. https://doi.org/10.1007/978-981-15-6949-4_18
Praça LB, Batista AC, Martins ÉS, Siqueira CB, Dias DG, Gomes AC, Falcão R, Monnerat RG (2004) Estirpes de Bacillus thuringiensis efetivas contra insetos das ordens Lepidoptera, Coleoptera e Diptera. Pesq Agropec Bras 39:11–16. https://doi.org/10.1590/S0100-204X2004000100002
Quan M, Xie J, Liu X, Li Y, Rang J, Zhang T, Zhou F, Xia L, Hu S, Sun Y, Ding X (2016) Comparative analysis of genomics and proteomics in the new isolated Bacillus thuringiensis X022 revealed the metabolic regulation mechanism of carbon flux following Cu2+ treatment. Front Microbiol 7:792. https://doi.org/10.3389/fmicb.2016.00792
Rang J, He H, Wang T, Ding X, Zuo M, Quan M, Sun Y, Yu Z, Hu S, Xia L (2015) Comparative analysis of genomics and proteomics in Bacillus thuringiensis 4.0718. PLoS ONE 10:e0119065. https://doi.org/10.1371/journal.pone.0119065
Richter M, Rosselló-Móra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci 106:19126–19131. https://doi.org/10.1073/pnas.0906412106
Richter M, Rosselló-Móra R, Oliver Glöckner F, Peplies J (2015) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 32:929–931. https://doi.org/10.1093/bioinformatics/btv681
Robertson JL, Jones MM, Olguin E, Alberts B (2017) Bioassays with arthropods, 3rd edn. CRC Press, Taylor & Francis Group, Boca Raton
Sanahuja G, Banakar R, Twyman RM, Capell T, Christou P (2011) Bacillus thuringiensis: a century of research, development and commercial applications. Plant Biotechnol J 9:283–300. https://doi.org/10.1111/j.1467-7652.2011.00595.x
Santos MD, Lima DB, Fischer JS, Clasen MA, Kurt LU, Camillo-Andrade AC, Monteiro LC, de Aquino PF, Neves-Ferreira AG, Valente RH, Trugilho MR, Brunoro GV, Souza TA, Santos RM, Batista M, Gozzo FC, Durán R, Yates JR, Barbosa VC, Carvalho PC (2022) Simple, efficient and thorough shotgun proteomic analysis with PatternLab V. Nat Protoc 17:1553–1578. https://doi.org/10.1038/s41596-022-00690-x
Sathyan T, Jayakanthan M, Mohankumar S, Balasubramani V, Kokiladevi E, Ravikesavan R, Sathiah N (2022) Genome profiling of an indigenous Bacillus thuringiensis isolate, T405 toxic against the fall armyworm, Spodoptera frugiperda (JE Smith) (Lepidoptera: Noctuidae). Microb Pathog 173:105820. https://doi.org/10.1016/j.micpath.2022.105820
Schmidt FG, Monnerat RG, Borges M, Carvalho R (2001) Metodologia de criação de insetos para a avaliação de agentes entomopatogênicos. In: e ERG (ed) Biotecnologia. Circular Técnica, Brasília
Schnepf E, Crickmore N, Rie JV, Lereclus D, Baum J, Feitelson J, Zeigler DR, Dean DH (1998) Bacillus thuringiensis and its pesticidal crystal proteins. Microbiol Mol Biol Rev 62:775–806. https://doi.org/10.1128/MMBR.62.3.775-806.1998
Silva MTB (1995) Associação de Baculovirus anticarsia com subdosagem de inseticidas no controle de Anticarsia gemmatalis (Hübner, 1818). Ciência Rural 25:353–358
Singh D, Samiksha Thayil SM, Sohal SK, Kesavan AK (2021) Exploration of insecticidal potential of cry protein purified from Bacillus thuringiensis VIID1. Int J Biol Macromol 174:362–369. https://doi.org/10.1016/j.ijbiomac.2021.01.143
Sreshty MAL, Kumar KP, Murty USN (2011) Synergism between wild-type Bacillus thuringiensis subsp. israelensis and B. sphaericus strains: a study based on isobolographic analysis and histopathology. Act Tropica 118:14–20. https://doi.org/10.1016/j.actatropica.2010.12.012
Srikanth J, Subramonian N, Premachandran MN (2011) Advances in transgenic research for insect resistance in sugarcane. Trop Plant Biol 4:52–61. https://doi.org/10.1007/s12042-011-9077-2
Sun D, Zhu L, Guo L, Wang S, Wu Q, Crickmore N, Zhou X, Bravo A, Soberón M, Guo Z, Zhang Y (2022) A versatile contribution of both aminopeptidases N and ABC transporters to Bt Cry1Ac toxicity in the diamondback moth. BMC Biol 20:33. https://doi.org/10.1186/s12915-022-01226-1
Tailor R, Tippett J, Gibb G, Pells S, Jordan L, Ely S (1992) Identification and characterization of a novel Bacillus thuringiensis δ-endotoxin entomocidal to coleopteran and lepidopteran larvae. Mol Microbiol 6:1211–1217. https://doi.org/10.1111/j.1365-2958.1992.tb01560.x
Tan SY, Cayabyab BF, Alcantara EP, Ibrahim YB, Huang F, Blankenship EE, Siegfried BD (2011) Comparative susceptibility of Ostrinia furnacalis, Ostrinia nubilalis and Diatraea saccharalis (Lepidoptera: Crambidae) to Bacillus thuringiensis Cry1 toxins. Crop Protect 30:1184–1189. https://doi.org/10.1016/j.cropro.2011.05.009
Wu D, He J, Gong Y, Chen D, Zhu X, Qiu N, Sun M, Li M, Yu Z (2011) Proteomic analysis reveals the strategies of Bacillus thuringiensis YBT-1520 for survival under long-term heat stress. Proteomics 11:2580–2591. https://doi.org/10.1002/pmic.201000392
Xie J, Peng J, Yi Z, Zhao X, Li S, Zhang T, Quan M, Yang S, Lu J, Zhou P, Xia L, Ding X (2019) Role of hsp20 in the production of spores and insecticidal crystal proteins in Bacillus thuringiensis. Front Microbiol 10:2059. https://doi.org/10.3389/fmicb.2019.0205
Ye J, Zhang Y, Cui H, Liu J, Wu Y, Cheng Y, Xu H, Huang X, Li S, Zhou A, Zhang X, Bolund L, Chen Q, Wang J, Yang H, Fang L, Shi C (2018) WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update. Nucleic Acids Res 46:W71–W75. https://doi.org/10.1093/nar/gky400
Yin J, Ding X, Xia L, Yu Z, Lv Y, Hu S, Xiao X (2011) Transcription of gene in an acrystalliferous strain of Bacillus thuringiensis XBU001 positively regulated by the metalloprotease camelysin gene at the onset of stationary phase. FEMS Microbiol Lett 318:92–100. https://doi.org/10.1111/j.1574-6968.2011.02247.x
Zghal RZ, Ghedira K, Elleuch J, Kharrat M, Tounsi S (2018) Genome sequence analysis of a novel Bacillus thuringiensis strain BLB406 active against Aedes aegypti larvae, a novel potential bioinsecticide. J Biol Macromol 116:1153–1162. https://doi.org/10.1016/j.ijbiomac.2018.05.119
Zhou H, Zhang J, Shao Y, Wang J, Xu W, Liu Y, Yu S, Ye Q, Pang R, Wu S, Gu Q, Xue L, Zhang J, Li H, Wu Q, Ding Y (2022) Development of a high resolution melting method based on a novel molecular target for discrimination between Bacillus cereus and Bacillus thuringiensis. Food Res Int 151:110845. https://doi.org/10.1016/j.foodres.2021.110845
Zhu L, Peng D, Wang Y et al (2015) Genomic and transcriptomic insights into the efficient entomopathogenicity of Bacillus thuringiensis. Sci Rep 5:14129. https://doi.org/10.1038/srep14129
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This work was supported by grants from the National Council of Scientific and Technological Development (CNPq—process numbers: 313455/2019-8; 427304/2018-0; 163178/2020-8), Tocantins State Foundation for Research Aid (FAPT-SESAU/TO-DECIT/SCTIE/MS_CNPQ/N° 01/2017) and Federal University of Tocantins (PROPESQ)—EDITAL Nº 29/2020 PROPESQ and PPGBIOTEC/UFT/GURUPI- Chamada pública para auxílio de tradução e/ou publicação de artigos científicos-EDITAL Nº 011/2020.
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RWSA, GBA, and EEO designed the experiments. GBA, RWSA, and BMR performed the genomic and proteomic data analysis. GBA, LOVJ, GRS, BMR, and RWSA drafted the manuscript. RWSA, EEO, LOVJ, BMR, MAO, and MMS revised the manuscript. All authors read and approved the final manuscript.
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Alves, G.B., de Oliveira, E.E., Jumbo, L.O.V. et al. Genomic–proteomic analysis of a novel Bacillus thuringiensis strain: toxicity against two lepidopteran pests, abundance of Cry1Ac5 toxin, and presence of InhA1 virulence factor. Arch Microbiol 205, 143 (2023). https://doi.org/10.1007/s00203-023-03479-y
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DOI: https://doi.org/10.1007/s00203-023-03479-y