Skip to main content
Log in

Characterization of two soil metagenome-derived lipases with high specificity for p-nitrophenyl palmitate

  • Original Paper
  • Published:
Archives of Microbiology Aims and scope Submit manuscript

Abstract

Two novel genes (pwtsB and pwtsC) encoding lipases were isolated by screening the soil metagenomic library. Sequence analysis revealed that pwtsB encodes a protein of 301 amino acids with a predicted molecular weight of 33 kDa, and pwtsC encodes a protein of 323 amino acids with a predicted molecular weight of 35 kDa. Furthermore, both genes were cloned and expressed in Escherichia coli BL21 (DE3) using pET expression system. The expressed recombinant enzymes were purified by Ni-nitrilotriacetic acid affinity chromatography and characterized by spectrophotometric with different p-nitrophenyl esters. The results showed that PWTSB displayed a high degree of activity and stability at 20°C with an optimal pH of around 8.0, and PWTSC at 40°C with an optimal pH of around 7.0. P-nitrophenyl palmitate (p-NPP) was identified as the best substrate of PWTSB and PWTSC. The specific activities of PWTSB and PWTSC were 150 and 166 U/mg, respectively toward p-NPP at 30°C, about 20-fold higher than that toward p-nitrophenyl butyrate (C4) and caprylate (C8). In conclusion, our results suggest that PWTSB is a cold adapt lipase and PWTSC is a thermostable lipase to long-chain p-nitrophenyl esters.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

References

  • Arpigny JL, Jaeger KE (1999) Bacterial lipolytic enzymes: classification and properties. Biochem J 343:177–183

    Article  PubMed  CAS  Google Scholar 

  • Arpigny JL, Feller G, Gerday C (1993) Cloning, sequence and structural features of a lipase from the antarctic facultative psychrophile Psychrobacter immobilis B10. Biochim Biophys Acta 1171:331–333

    PubMed  CAS  Google Scholar 

  • Choo DW, Kurihara T, Suzuki T, Soda K, Esaki N (1998) A cold adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11–1: gene cloning and enzyme purification and characterization. Appl Environ Microbiol 64:486–491

    PubMed  CAS  Google Scholar 

  • Elend C, Schmeisser C, Hoebenreich H, Steele HL, Streit WR (2007) Isolation and characterization of a metagenome-derived and cold-active lipase with high stereospecificity for (R)-ibuprofen esters. J Biotechnol 130:370–377

    Article  PubMed  CAS  Google Scholar 

  • Feller G, Thiry M, Gerday C (1991) Nucleotide sequence of the lipase gene lip3 from the antarctic psychotroph Moraxella TA144. Biochim Biophys Acta 1088:323–324

    PubMed  CAS  Google Scholar 

  • Ferrer M, Martínez-Abarca F, Golyshin PN (2005) Mining genomes and ‘metagenomes’ for novel catalysts. Curr Opin Biotechnol 16:588–593

    Article  PubMed  CAS  Google Scholar 

  • Gupta R, Gupta N, Rathi P (2004) Bacterial lipases: an overview of production, purification and biochemical properties. Appl Microbiol Biotechnol 64:763–781

    Article  PubMed  CAS  Google Scholar 

  • Handelsman J, Rondon MR, Brady SF, Clardy J, Goodman RM (1998) Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol 5:R245–R249

    Article  PubMed  CAS  Google Scholar 

  • Hårdeman F, Sjöling S (2007) Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment. FEMS Microbiol Ecol 59:524–534

    Article  PubMed  CAS  Google Scholar 

  • Jaeger KE, Eggert T (2002) Lipases for biotechnology. Curr Opin Biotechnol 13:390–397

    Article  PubMed  CAS  Google Scholar 

  • Jaeger KE, Dijkstra BW, Reetz MT (1999) Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases. Annu Rev Microbiol 53:315–351

    Article  PubMed  CAS  Google Scholar 

  • Kim S, Joo S, Yoon HC, Ryu Y, Kim KK, Kim TD (2007) Purification, crystallization and preliminary crystallographic analysis of Est25: a ketoprofen-specific hormone-sensitive lipase. Acta Crystallogr Sect F Struct Biol Cryst Commun 63:579–581

    Article  PubMed  CAS  Google Scholar 

  • Lee SW, Won K, Lim HK, Kim JC, Choi GJ, Cho KY (2004) Screening for novel lipolytic enzymes from uncultured soil microorganisms. Appl Microbiol Biotechnol 65:720–726

    Article  PubMed  CAS  Google Scholar 

  • Lee MH, Lee CH, Oh TK, Song JK, Yoon JH (2006) Isolation and characterization of a novel lipase from a metagenomic library of tidal flat sediments: evidence for a new family of bacterial lipases. Appl Environ Microbiol 72:7406–7409

    Article  PubMed  CAS  Google Scholar 

  • Pérez C, Juárez K, García-Castells E, Soberón G, Servín-González L (1993) Cloning, characterization, and expression in Streptomyces lividans 66 of an extracellular lipase-encoding gene from Streptomyces sp. M11. Gene 123:109–114

    Article  PubMed  Google Scholar 

  • Rhee JK, Ahn DG, Kim YG, Oh JW (2005) New thermophilic and thermostable esterase with sequence similarity to the hormone-sensitive lipase family, cloned from a metagenomic library. Appl Environ Microbiol 71:817–825

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Russell DW (2001) Molecular Cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

    Google Scholar 

  • Valdez F, González-Cerón G, Kieser HM, Servín-González L (1999) The Streptomyces coelicolor A3(2) lipAR operon encodes an extracellular lipase and a new type of transcriptional regulator. Microbiology 145:2365–2374

    PubMed  CAS  Google Scholar 

  • Voget S, Steele HL, Streit WR (2006) Characterization of a metagenome-derived halotolerant cellulase. J Biotechnol 126:26–36

    Article  PubMed  CAS  Google Scholar 

  • Zhang JW, Zeng RY (2006) Cloning, Expression and characterization of the cold lipase(lip3) from metagenomic DNA of an antarctic deep sea sediment. Prog Biochem Biophys 33:1207–1214

    CAS  Google Scholar 

  • Zhou J, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62:316–322

    PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by grant from Department of Health of Shandong Province (2007HZ036).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Ping Wei or Liping Bai.

Additional information

Communicated by Erko Stackebrandt.

P. Wei and L. Bai contributed equally to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Wei, P., Bai, L., Song, W. et al. Characterization of two soil metagenome-derived lipases with high specificity for p-nitrophenyl palmitate. Arch Microbiol 191, 233–240 (2009). https://doi.org/10.1007/s00203-008-0448-5

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00203-008-0448-5

Keywords

Navigation