Knockout of Zbed6, but not knockin of Igf2, results in reduced beta cell area
The Zbed6 KO mice were generated using the C57BL/6 embryonic stem cell line Bruce4 [20], which are Nnt+/Nnt+ as assessed by RNA sequencing (RNA-Seq) analysis of the Nnt transcripts (ESM Fig. 1). The general characteristics of the Zbed6 KO and Igf2 knockin mice have been recently characterised [3]. To specifically study insulin-producing beta cells, we euthanised Zbed6+/+ Igf2G/G (WT G), Zbed6−/− Igf2G/G (KO G), Zbed6+/+ Igf2pA/mG (WT G/A) and Zbed6−/− Igf2pA/mG (KO G/A) mice when 25–28 weeks of age. WT G mice express ZBED6 and low levels of IGF2, the KO G mice lack ZBED6 and express high IGF2 levels, the WT G/A mice do not lack ZBED6 but express high IGF2 levels, and the KO G/A mice lack ZBED6 and express high IGF2 levels [3]. Presently, the total pancreas area and the number of islets per total pancreas area were not affected by ZBED6 or IGF2 (Fig. 1a,b). However, the mean islet size, as well as the beta cell area per total pancreas area, were reduced in both KO G and KO G/A mice (Fig. 1c,d). Thus, the reduced beta cell area occurred in response to Zbed6 KO and independently from Igf2 expression. Despite this lowered beta cell area, neither alpha- nor beta cell proliferation were decreased by Zbed6 KO or Igf2 knockin (Fig. 1e,f).
Zbed6 KO promotes glucose intolerance in HFD-fed mice
Both WT G and KO G mice, 5–7 weeks old, were given a control diet (WT CD and KO CD, respectively) or an HFD (WT HFD and KO HFD, respectively) for 10 weeks. These mice are anticipated to present a mild beta cell phenotype [21]. The HFD increased the weight of WT G mice, but not of KO G mice (Fig. 1g). The weight of KO G mice was higher than that of WT G mice at start of the HFD, which is in line with a previous report stating that muscle and internal organ mass is increased in KO mice [3]. Indeed, using micro-CT we observed an augmented muscle mass of KO CD as compared with WT CD at the level corresponding to the lumbar vertebrae 4 to 6 (L4-L6) (Fig. 1h). In HFD mice, however, this effect was abolished (Fig. 1h).
As in a previous study [3], a GTT showed that KO CD mice responded similarly to the glucose injection as WT CD mice (Fig. 1i). The GTT of WT CD and WT HFD mice were similar. The glucose levels of KO HFD mice were, however, augmented when compared with WT HFD mice (Fig. 1i). Furthermore, calculations of the AUC showed that KO worsened the glucose tolerance in HFD mice (Fig. 1j). We also performed an ITT and observed no differences between the different groups (Fig. 1k), suggesting that neither the 10-week HFD, nor the Zbed6 KO, affected peripheral insulin sensitivity.
The beta cell area was decreased in KO CD mice as compared with WT CD mice (Fig. 1l), which is in line with the findings with older KO G mice (25–28 weeks) (Fig. 1d). A representative picture of WT G and KO G islets shows that the morphology and size of islet cells was not affected (Fig. 1m). This was paralleled by a lowered beta cell replication rate in the younger (15–17 weeks) KO CD mice (Fig. 1o). This lowering effect by Zbed6 KO was not observed in HFD-treated mice. There was a non-significant trend to similar effects of Zbed6 KO on alpha cells (Fig. 1n and p).
Zbed6 KO reduces Pttg1 and increases levels of mRNAs coding for mitochondrial oxidative phosphorylation proteins when exposed to an HFD
RNA-Seq analysis of Zbed6-KO G and WT G islets, under CD conditions, revealed up- and downregulation of only six and two genes, respectively (False discovery rate [FDR] < 0.05, Fig. 2a). In contrast, during HFD treatment there was upregulation of 377 genes and downregulation of 409 genes (Fig. 2a, ESM Table 2). Among the downregulated genes we observed that the cell cycle gene Pttg1 was reduced by almost 90% in the KO islets (ESM Table 2 and Fig. 2c), which was confirmed using RT-qPCR (Fig. 2d). Chromatin immunoprecipitation sequencing (ChIP-seq) using the mouse MIN6 beta cell line indicated a binding site of ZBED6 in the Pttg1 gene (ESM Fig. 2). In addition to Pttg1, we also observed a lowered expression of the cell cycle protein cyclin C (Table 1 and ESM Table 2). Other noteworthy upregulated genes were Ins1/2, Pcsk2 and Glut2/Slc2a2, all essential for insulin production (ESM Fig. 3 and Table 1). Beta cell transcription factors, Nkx6-1, FoxO1 and Pax6 [22], were increased in KO islets (Fig. 2a and Table 1), concurring with previous studies [4, 6]. Also in line with previous reports [5], E-cadherin was downregulated, and N-cadherin and the cAMP-generating enzyme Adcy9 were upregulated (Table 1). The most important beta cell autoantigens in type 1 diabetes (Ins1/2, Slc30a8, Ica1, Gad1, Ptprn2) were expressed at higher levels in Zbed6-KO islets. Among the upregulated genes in the HFD conditions we observed also Igf2, which confirms that ZBED6 acts as a repressor of Igf2 expression in islet cells (Table 1).
Table 1 Genes affected by Zbed6 knockout in mice. Validations from in vitro beta cell studies were also included
Gene ontology enrichment (GOE) analysis of the KO differentially expressed genes in HFD conditions showed clustering (FDR < 0.05) in the category oxidative phosphorylation among the upregulated genes (Fig. 2b). The 13 genes belonging to this category are shown in ESM Table 3. This was paralleled by increased expression of uncoupling protein 2 (Ucp2) and reactive oxygen species modulator 1 (Romo1) (Table 1), two proteins involved in mitochondrial ROS production and protection from ROS [23, 24].
ZBED6 decreases EndoC-βH1 cell basal and maximal OCR
We next determined EndoC-βH1 cell OCR at basal (no addition) and carbonyl cyanide-p-trifluoromethoxyphenylhydrazone (FCCP)-stimulated (maximal OCR) conditions 2 days after ZBED6 adenoviral transduction (Fig. 3a). ZBED6 adenoviral particles increased ZBED6 protein levels in EndoC-βH1 beta cells without signs of cytotoxicity (Fig. 3a, results not shown) and generated an approximate tenfold increase in ZBED6 mRNA expression (Fig. 3b). ZBED6 overexpression was associated with a lowered IGF2 mRNA level and an increased PTTG1 mRNA level (Fig. 3b). ZBED6 overexpression resulted in lower basal and maximal OCR as compared with control virus exposed cells (Fig. 3c,d). IGF2 addition for 1 h stimulated both basal and maximal OCR in control cells, but not in ZBED6 cells. ECAR was unaffected by ZBED6, and was stimulated by IGF2 in control cells, but not in ZBED6 cells (Fig. 3d). Thus, ZBED6 restricts respiration, but not via repression of the IGF2 gene.
We also analysed effects of ZBED6 overexpression in cells stimulated by palmitate (1.5 mmol/l) and high glucose (20 mmol/l) for 1 h. Addition of palmitate and high glucose increased ECAR and reduced basal OCR (Fig. 3e,f), indicating that EndoC-βH1 cells have a high capacity to upregulate glycolytic ATP production in response to a high glucose concentration (Warburg effect). However, in the presence of FCCP, maximal respiration was increased by palmitate and high glucose in control cells (Fig. 3f), suggesting that palmitate and high glucose can further stimulate respiration at conditions of low mitochondrial ATP. ZBED6 promoted a lowered maximal OCR with and without palmitate and high glucose (Fig. 3f).
ZBED6 overexpression also affected EndoC-βH1 cell proliferation as assessed by analysis of the distribution of cells in the different cell cycle phases. We observed that the fraction of cells in the S phase was increased 2 days after transduction at the concentration of 50 MOI (Fig. 3g). Three days after transfection, the fraction of cells in G1 and G2/M were decreased and increased, respectively, by ZBED6 (Fig. 3h), suggesting that ZBED6 promotes increased proliferation.
To analyse whether ZBED6 affects glucose-induced insulin release we transduced dispersed human islets with ZBED6 adenoviral vectors. After 3 days, the higher concentration of the vector (50 MOI) resulted in a lowered insulin release at 17 mmol/l glucose (Fig. 3i). This resulted in a lowered glucose-stimulated insulin release ratio (Fig. 3j).
ZBED6 reduces mitochondrial membrane potential and mitochondrial ROS production
We next transfected EndoC-βH1 cells with a ZBED6-GFP expression vector and immunostained for respiratory chain protein ATPase inhibitory factor 1 (ATPIF1), a mitochondrial marker protein, which allows visualisation of mitochondrial density and morphology. ZBED6-GFP-positive cells displayed mitochondria with similar morphology and number as those of non-GFP-positive cells 2 days after transfection (ESM Fig. 4). However, when cells were stained with JC-1, which emits red J-aggregate light when the inner membranes of mitochondria are polarised, GFP-positive cells showed fewer J-aggregate positive mitochondrial structures than GFP-negative cells (Fig. 4a,b). Also, MitoTracker Red uptake into mitochondria of GFP-positive cells was lower than that of GFP-negative cells (Fig. 4a,b). This supports the hypothesis that ZBED6 lowers mitochondrial activity, as MitoTracker Red is not efficiently taken up by inactive mitochondria. Mitochondrial ROS production, assessed using the MitoSOX probe, was lower in ZBED6-overexpressing EndoC-βH1 cells cultured with palmitate and high glucose (Fig. 4c).
Zbed6 knockdown results in increased OCR, J-aggregate formation and mitochondrial ROS production
Zbed6 was knocked down in MIN6 cells by using anti-Zbed6 short hairpin RNA (shRNA) lentiviral particles [4,5,6]. As control cells we used scramble shRNA lentiviral-transduced cells (neg) and found that Zbed6 knockdown (sh1) resulted in higher basal and maximal OCR (Fig. 4d). Also, ECAR was higher in sh1 cells than in neg cells (Fig. 4d). The increased OCR of sh1 cells was observed at both 5 mmol/l and 25 mmol/l glucose.
Silencing of Zbed6 was also performed in insulin-producing βTC-6 cells [4], and in this case the Zbed6 knockdown sh1, sh2 and sh1+sh2 cells displayed increased JC-1 J-aggregate fluorescence both at basal conditions and after 30 and 60 min of stimulation with palmitate and high glucose (Fig. 4e).
The MIN6 cells were also used for analysis of mitochondrial ROS production using the MitoSOX probe. The MIN6 sh1 cells produced more mitochondrial ROS, both at basal and palmitate stimulated conditions, than neg cells (Fig. 4f).
ZBED6 reduces the expression of the mitochondrial regulator PRC
As ZBED6-restricted mitochondrial activity is not restored by exogenous IGF2, we looked for other ZBED6 targets. ZBED6 binds with moderate strength to the PPAR coactivator-1 (PRC) promoter region in MIN6 cells, but very weakly in C2C12 myotube cells [25] (ESM Fig. 2). PRC, together with PGC-1α and PGC-1β, belongs to the PPAR coactivator family and are known activators of mitochondrial protein transcription [26]. In ZBED6-overexpressing EndoC-βH1 cells, PRC levels were lowered at basal conditions and after culture for 24 h in the presence of palmitate and high glucose (Fig. 4g,h). In MIN6 sh1 cells (Zbed6-knockdown), PRC was increased at basal conditions (Fig. 4h), suggesting that ZBED6 controls PRC levels in beta cells.
Knockdown of PRC results in lowered basal and maximal OCR
We next performed RNA interference (RNAi) to downregulate PRC protein levels in EndoC-βH1 cells. In a small interfering RNA (siRNA) titration experiment, we observed after 2 and 3 days an approximate 40–50% lowering of the PRC protein (ESM Fig. 5). In such PRC knockdown cells, basal and maximal OCR were decreased when comparing with scrambled siRNA treatment (Fig. 4i). PRC knockdown did not affect ECAR, suggesting that ZBED6 suppresses mitochondrial function by reducing PRC levels.