Abstract
Aims/hypothesis
The mechanisms underlying the cellular metabolic memory induced by high glucose remain unclear. Here, we sought to determine the effects of microRNAs (miRNAs) on metabolic memory in diabetic retinopathy.
Methods
The miRNA microarray was used to examine human retinal endothelial cells (HRECs) following exposure to normal glucose (N) or high glucose (H) for 1 week or transient H for 2 days followed by N for another 5 days (H→N). Levels of sirtuin 1 (SIRT1) and acetylated-nuclear factor κB (Ac-NF-κB) were examined following transfection with miR-23b-3p inhibitor or with SIRT1 small interfering (si)RNA in the H→N group, and the apoptotic HRECs were determined by flow cytometry. Retinal tissues from diabetic rats were similarly studied following intravitreal injection of miR-23b-3p inhibitor. Chromatin immunoprecipitation (ChIP) analysis was performed to detect binding of NF-κB p65 to the potential binding site of the miR-23b-27b-24-1 gene promoter in HRECs.
Results
High glucose increased miR-23b-3p expression, even after the return to normal glucose. Luciferase assays identified SIRT1 as a target mRNA of miR-23b-3p. Reduced miR-23b-3p expression inhibited Ac-NF-κB expression by rescuing SIRT1 expression and also relieved the effect of metabolic memory induced by high glucose in HRECs. The results were confirmed in the retina using a diabetic rat model of metabolic memory. High glucose facilitated the recruitment of NF-κB p65 and promoted transcription of the miR-23b-27b-24-1 gene, which can be suppressed by decreasing miR-23b-3p expression.
Conclusions/interpretation
These studies identify a novel mechanism whereby miR-23b-3p regulates high-glucose-induced cellular metabolic memory in diabetic retinopathy through a SIRT1-dependent signalling pathway.
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Introduction
Diabetic retinopathy is a debilitating vascular complication of diabetes that occurs primarily through the long-term detrimental effects of hyperglycaemia [1]. Vascular complications often persist and may progress despite improved glucose control, suggesting that previous episodes of transient hyperglycaemia may induce longstanding deleterious vascular dysfunction [2]. This phenomenon has been defined as ‘metabolic memory’ [2, 3] and remains poorly understood and a major challenge in treating diabetes.
Accumulating studies have reported the altered expression of inflammatory genes during diabetic retinopathy [4]. These retinal inflammatory mediators may be activated for several months after the reinstitution of glycaemic control following a period of poor control [5, 6]. Nuclear factor κB (NF-κB), which is activated by high glucose and promotes the expression of pro-inflammatory cytokines and pro-apoptosis regulators, has been proposed to play a role in the vascular complications of diabetes [7].
Sirtuin 1 (SIRT1), an NAD+-dependent class III histone deacetylase, plays critical roles in stress responses, metabolism, cell cycle and survival [8–10]. It regulates cellular inflammation in endothelial cells, and the anti-inflammatory property of SIRT1 is closely related to its inhibition of NF-κB [11–13].
Sirtuin 1 confers resistance to the high-glucose-induced cellular metabolic memory through an inflammatory signalling pathway in diabetic retinopathy [14]. However, the mechanisms of SIRT1 regulation remain incompletely understood.
MicroRNAs (miRNAs) represent an exciting area of research because of their involvement in many biological processes, including the development of metabolic diseases such as diabetes [15–17]. As highly conserved, short non-coding RNAs (21–25 nucleotides in length), miRNAs negatively regulate gene expression at the post-transcriptional level by binding to the 3′ untranslated region (3′-UTR) of target mRNA, leading to its degradation or translational repression [17]. Several miRNAs regulate SIRT1 in various disease conditions, including diabetic retinopathy [18–20]. However, no studies have focused on the regulation of SIRT1 in the cellular metabolic memory of diabetic retinopathy.
Methods
Cell culture and treatments
Cultured HRECs of three to four passages were plated at 2,500 cells/cm2 in six-well plates (Corning, Acton, MA, USA) and treated with normal glucose (5 mmol/l) (N) or high glucose (25 mmol/l) (H) for 1 week or H for 48 h followed by N for 5 days (H→N). Cells were incubated in 20 mmol/l mannitol together with N (MN) as osmotic controls. See the electronic supplementary material (ESM) Methods for details.
Microarray and quantitative RT-PCR analysis of miRNA
The HREC miRNA expression profiles were compared using miRNA microarray analysis following exposure to normal glucose, high glucose, or transient high glucose followed by normal glucose. The results were verified by quantitative (q)RT-PCR analysis. See the ESM Methods for details.
Molecular biology methods
Total RNA was extracted from cultured cells and tissues using TRIzol (Invitrogen, Carlsbad, CA, USA) for mRNA analyses. Levels of SIRT1 mRNA were quantified by qRT-PCR using the Quantitect SYBR Green PCR Kit (Qiagen, Hilden, Germany) and normalised to β-actin. See the ESM Methods for details. Antibodies against SIRT1, NF-kB p65 (acetyl K310) or albumin were used for western blot analysis, with β-actin as an internal control. See the ESM Methods for details.
A luciferase reporter assay was performed to detect the direct regulation of the SIRT1 3′-UTR by miR-23b-3p. See the ESM Methods for further details. The deacetylase activity of SIRT1 was assessed in the nuclear fraction using a fluorometric method in accordance with the manufacturer’s instructions. See the ESM Methods for details. Synthetic miR-23b-3p mimic, inhibitor or small interfering (si)RNA against SIRT1 was used for each transfection. See the ESM Methods for details. Cell apoptosis was detected with an Annexin V-FITC kit and by flow cytometry analysis (BD FACSVantage; BD Sciences, San Jose, CA, USA). The data were analysed using Cell-Quest software (BD Sciences) to determine the rate of apoptosis in the upper and lower right quadrants. See the ESM Methods for details.
Chromatin immunoprecipitation (ChIP) analysis was performed on the protein–DNA complexes isolated from cross-linked cells by immunoprecipitation with an anti-NF-κB p65 antibody (acetyl K310), and the SIRT1-binding region of the miR-23b-27b-24-1 promoter was quantified by SYBR Green-based qPCR. See the ESM Methods for further details.
Animal experiments
Male Sprague–Dawley (SD) rats (∼200 g, 8 weeks old) were housed in standard plastic rodent cages and maintained at a regulated environment (24°C, 12 h light, 12 h dark cycle with lights on at 07:00 and off at 19:00 hours). The rats were randomised into five groups (n = 10 rats/group). In situ hybridisation was used to detect miR-23b-3p expression in retinal tissue sections. Retinal digest procedures were performed to measure the acellular capillaries in trypsin-digested retinal blood vessels as described previously [14]. Details are in the ESM Methods. All animal protocols were approved by the Animal Care and Use Committee of Shanghai Jiaotong University Affiliated First People's Hospital.
Statistical analysis
Data are presented as the mean ± SD from at least three independent experiments. Statistical comparisons between two groups were made using a two-tailed Student’s t test. Differences among three or more than three groups were compared by one-way ANOVA followed by least significant difference (LSD) post hoc test. (GraphPad Prism 4.0, GraphPad, San Diego, CA, USA and SPSS version 17.0, SPSS, Chicago, IL, USA). All p values were two-sided, and p < 0.05 was considered statistically significant.
Results
Screening of SIRT1-targeting miRNAs in diabetic metabolic memory in HRECs
Using an miRNA microarray analysis, we found a total of 114 known human miRNAs with signals of more than 500 in both the H and H→N groups (ESM Table 1). Twenty-two miRNAs were upregulated by 1.5-fold or more in both the H and H→N groups compared with the N group (Fig. 1a and ESM Table 2). We then used the StarBase website [21], a comprehensive web-based bioinformatics algorithm, to identify 36 potential SIRT1-binding miRNAs based on complementarities of the 3′-UTR SIRT1 mRNA nucleotide sequence from at least two of five prediction tools included on the website (ESM Table 3). The level of miR-23b-3p was upregulated in HRECs after high-glucose treatment or transient high glucose followed by normal glucose and miR-23b-3p was an in silico-predicted SIRT1-targeting miRNA (Fig. 1b). In addition, we performed qRT-PCR analysis of miR-23b-3p expression in the three HREC groups as well as HRECs treated with 5 mmol/l glucose plus 20 mmol/l mannitol. The results showed the same trend as the results of miRNA microarray analysis in miR-23b-3p expression, with no effects of osmolarity (Fig. 1c).
SIRT1 is a direct target of miR-23b-3p in HRECs
To assess whether miR-23b-3p can directly target SIRT1, a luciferase reporter plasmid was constructed that contained either a wild-type (WT) or mutant version of the predicted interaction region in the SIRT1 3′-UTR region (Fig. 2a). Transient co-transfection of HRECs with the WT reporter plasmid and miR-23b-3p mimic led to a decrease in luciferase activity compared with the mimic control sequence. In contrast, miR-23b-3p did not suppress the luciferase activity of the mutant reporter (Fig. 2b). This reduction of SIRT1 at the mRNA and protein levels was detected in HRECs that were transfected with ectopic miR-23b-3p (Fig. 2c–e). These results confirmed the direct regulation of SIRT1 by miR-23b-3p in HRECs.
High-glucose-induced SIRT1 reduction and cellular metabolic memory in HRECs is mediated by miR-23b-3p
Cells were exposed to normal glucose, high glucose or transient high glucose followed by normal glucose with the transfection of miR-23b-3p inhibitor or control scrambled miRNA.
High-glucose treatment for 1 week resulted in significantly decreased levels of SIRT1 mRNA (Fig. 3a), SIRT1 protein (Fig. 3b, c) and enzyme activity (Fig. 3d). Compared with exposure to continuous normal glucose, SIRT1 levels were also lower in cells treated with high glucose for 2 days followed by normal glucose for 5 days (Fig. 3b, c; H→N). The transfection of miR-23b-3p inhibitor effectively rescued high-glucose-induced SIRT1 downregulation, whereas no such effect was observed with osmolarity treatment or the transfection of scrambled miRNA.
We also measured the level of cellular apoptosis using flow cytometry analysis (Fig. 3e). Continuous exposure to high glucose for 1 week significantly increased cellular apoptosis. Apoptosis was also increased in H→N cells. Furthermore, transfection of miR-23b-3p inhibitor prevented the cellular apoptosis associated with high-glucose-induced metabolic memory in HRECs, and this effect was reversed by the transfection of SIRT1 siRNA (Fig. 3e, f). To further verify that the transient exposure to high glucose (2 days) induced cellular metabolic memory in HRECs, we prolonged the high-glucose exposure time to 1 week and the total treatment time to 3 weeks, as in our previous study [14]. The results were consistent with the original test using the shorter high-glucose exposure time (ESM Fig. 1). These results support the hypothesis that miR-23b-3p mediates the high-glucose-induced SIRT1 reduction and cellular metabolic memory in HRECs.
High-glucose-induced Ac-NF-κB expression is mediated by miR-23b-3p through SIRT1 in HRECs
We performed western blot analysis to examine the Ac-NF-κB expression levels in cells exposed to normal-, high- or transiently high-glucose conditions, together with transfection of miR-23b-3p inhibitor or SIRT1 siRNA. As shown in Fig. 4a, b, continuous high-glucose treatment for 1 week significantly increased Ac-NF-κB levels. Levels of Ac-NF-κB were also increased in cells treated with transiently high glucose compared with exposure to normal glucose. However, miR-23b-3p inhibitor transfection significantly suppressed the Ac-NF-κB expression induced by high glucose after glucose normalisation in HRECs. No such effect was observed with osmolarity treatment or the transfection of scrambled miRNA.
Further transfection of HRECs with SIRT1-specific siRNA was carried out to decrease SIRT1 expression following miR-23b-3p inhibitor transfection. The repressive effect of miR-23b-3p inhibitor on high-glucose-induced Ac-NF-κB protein expression was abolished by SIRT1 knockdown (Fig. 4a, b). Therefore, these results indicate that miR-23b-3p mediates high-glucose-induced Ac-NF-κB expression and metabolic memory in HRECs through the suppression of SIRT1.
Memory of hyperglycaemic stress in the retinas of diabetic animals is promoted by miR-23b-3p
To determine whether these in vitro findings are associated with the development of retinal microangiopathy, an in vivo STZ-induced diabetic rat model was established. Analysis of retinal tissues from these rats with qRT-PCR after 3 months of uncontrolled diabetes showed a significant upregulation of miR-23b-3p that lasted for 3 months, even after return to normal glycaemic control (Fig. 5a). This result was further confirmed by in situ hybridisation using locked nucleic acid (LNA) probes. In the retinas of diabetic animals, miR-23b-3p was overexpressed in the cells of the vascular endothelium and the outer nuclear layers (Fig. 5b). We investigated the retinal SIRT1 and Ac-NF-κB protein levels. As a target of miR-23b-3p, SIRT1 protein was reduced in the retinas of diabetic rats. Conversely, Ac-NF-κB expression was increased in retinas with hyperglycaemic stress (Fig. 5c, d).
To evaluate a potential cause–effect relationship, we administered an intravitreal injection of miR-23b-3p inhibitor. The intraretinal delivery efficiency was assessed by measuring miR-23b-3p expression in the retina, and the results showed a reduction in retinal miR-23b-3p expression compared with the inhibitor normal control (NC)-injected group (Fig. 5a). This intravitreal injection of miR-23b-3p inhibitor normalised the diabetes-induced changes in SIRT1 and Ac-NF-κB expression in the retinas of treated rats. No such effect was observed following the injection of the inhibitor NC miRNA (Fig. 5c, d). Furthermore, an increase in retinal vascular permeability was detected in diabetic rats. All of the changes induced by hyperglycaemia remained for 3 months after glucose normalisation compared with exposure to continuous normal glucose. However, intravitreal injection of miR-23b-3p inhibitor significantly suppressed the vascular permeability in the retinas of rats with glucose normalisation for 3 months following 3 months of hyperglycaemia (Fig. 5e–h).
Binding of the NF-κB p65 subunit to promoter elements is involved in the high-glucose-induced transactivation of miR-23b-3p in HRECs
Most miRNAs are initially transcribed as primary transcripts by RNA polymerase II (Pol II) in the nucleus and can be regulated by transcriptional factors [22] such as NF-κB, signal transducer and activator of transcription 3 (acute-phase response factor) (STAT3) and v-myc avian myelocytomatosis viral oncogene homolog (c-Myc) [23–25]. High-glucose-induced miR-23b-3p increased the expression of Ac-NF-κB by inhibiting SIRT1 in HRECs. Therefore, we hypothesised that NF-κB activation would in turn upregulate miR-23b-3p through self-stabilising circuits. A putative NF-κB p65 binding site in the miR-23b-3p promoter corresponding to the coding gene miR-23b-27b-24-1 has previously been verified [23] (Fig. 6a).
To test the role of NF-κB p65 in high-glucose-induced miR-23b-3p expression, the specific inhibitor of kappa light polypeptide gene enhancer in B cells, kinase β (IKK2) inhibitor SC-514 was added to inhibit the p65-associated transcriptional activation of the NF-κB pathway. Subsequent qRT-PCR analysis revealed the significant inhibitory effect of SC-514 on the expression of pri-miR-23b-27b-24-1 in HRECs exposed to high glucose followed by normal glucose compared with cells that were not treated with SC-514 (Fig. 6b). We further performed ChIP analysis to identify the binding of the p65 components of NF-κB to the putative binding sites in the promoter elements of pri-miR-23b-27b-24-1 (Fig. 6c). Our data suggest that p65 binding to the promoter element mediates pri-miR-23b-27b-24-1 upregulation in high-glucose-induced transactivation of miR-23b-3p in HRECs.
Discussion
A growing number of studies have demonstrated that the molecular and pathological features of diabetic microvascular complications, including diabetic retinopathy, do not stop in response to excellent blood glucose control [26, 27]. Instead, progression continues beyond the point when good control is achieved, suggesting a ‘metabolic memory’ phenomenon [28, 29].
Inflammation plays an important role throughout the pathogenesis of diabetic microvascular complications [28, 30, 31]. Kowluru et al showed that high glucose significantly increased the activated caspase-3 and NF-κB levels, which remained increased 6 months later in STZ-induced diabetic rats [32], suggesting the persistent activation of inflammatory signalling pathways. Using the cell and rat models of metabolic memory induced by high glucose established in our previous study, we demonstrated that SIRT1 activation suppressed the cellular metabolic memory of high glucose in retinal endothelial cells by inhibiting the inflammatory gene NF-κB (also known as Rela) and the apoptosis gene Bax [14]. In the present study, we identified another level of regulation for glucose-induced SIRT1 downregulation and its downstream effects mediated through the alteration of miR-23b-3p.
Produced as small, non-protein-coding RNAs, miRNAs are endogenous regulators that play significant roles in many cellular processes [33, 34]. Accumulating evidence has recently illustrated the role of miRNAs in the pathogenesis of diabetes and its complications, including diabetic retinopathy [15, 35, 36]. The miRNA miR-125b plays a role in the dysregulation of Suv39h1 and associated chromatin H3K9me3 related to the increased expression of inflammatory genes in the vascular smooth muscle cells of diabetic mice. These results revealed an miRNA-related mechanism for sustained diabetic complications even after achieving glycaemic control [37].
We identified another miRNA, miR-23b-3p, as an important regulator of HRECs in diabetic retinopathy. Our results describe the role of miR-23b-3p in SIRT1 downregulation in HRECs, which also mediates Ac-NF-κB upregulation in the metabolic memory induced by high glucose in HRECs. We investigated the mechanisms contributing to this regulation at multiple levels. After the initial identification of miR-23b-3p upregulation in HRECs in the miRNA microarray, we used an miR-23b-3p antagomir to identify its biological significance in vitro. We examined the functional significance of this mechanism in vivo using an established animal model of diabetic retinopathy. Following exposure to hyperglycaemia, miR-23b-3p is expressed in microvessel endothelial cells and the cells of the outer nuclear layers (Fig. 5b). The regulation of SIRT1 by miR-23b-3p may not be specific to endothelial cells. Further studies are necessary to address such issues.
Acetylation of NF-κB increases significantly in diabetes-related vascular complications and is required for transcriptional activation of its target genes [38]. Under normal physiological conditions, there is a balance between the histone acetylation and deacetylation of NF-κB mediated by the histone acetyltransferases (HATs) and histone deacetylases (HDACs), respectively [39]. High glucose could increase the recruitment of HATs and decrease the association of HDACs [40], improving histone acetylation and NF-κB acetylation [41]. Chromatin histone modifications and enhanced NF-κB transcription activity allow increased binding of NF-κB to regulate inflammatory and diabetes-related genes [42].
The mechanism of stable NF-κB acetylation in metabolic memory has not been elucidated. As an epigenetic regulatory mechanism based on the above results, [43], we postulated that the chromatin histone modification mediated by transient hyperglycaemia would continue to recruit HATs and may be one of the mechanisms resulting in the continuous acetylation of NF-κB, which needs to be further investigated.
A class III histone deacetylase, SIRT1 inhibits NF-κB transcription by directly deacetylating the RelA/p65 protein at Lys310 and mediates anti-inflammatory effects in several pathophysiological processes. Yeung et al demonstrated that SIRT1-mediated deacetylation of Lys310 inhibits the transactivation of the RelA/p65 subunit and consequently suppresses NF-κB-dependent gene expression [39]. Liu et al reported that chronic inflammation stimulates the accumulation of SIRT1 in the promoter regions of cytokine genes and then induces deacetylation at the RelA/p65 subunit of the NF-κB complex [44]. Moreover, SIRT1-mediated deacetylation of NF-κB is crucially involved in the resolution of inflammation and metabolic disorders [45–47]. Our present study confirms the above findings and shows that SIRT1 represses high-glucose-induced cellular metabolic memory, at least in part through the deacetylation of NF-κB. Moreover, this effect can be regulated by an upstream miRNA, miR-23b-3p, which targets SIRT1 in diabetic retinopathy.
miRNAs frequently form positive feedback loops as they are themselves regulated by transcription factors that they directly or indirectly target [48, 49]. Such self-reinforcing circuits result from initiating events and are maintained by self-sustained feedback loops in the absence of the initiating signal [24].
We performed ChIP analysis to confirm the enhanced binding of NF-κB p65 to the promoter of the miR-23b-27b-24-1 gene, which encodes mature miR-23b-3p, in high-glucose-treated HRECs as well as cells returned to normal glucose conditions. Based on the findings described above, we identified a high-glucose-triggered feedback loop that involves the miR-23b-3p-mediated repression of SIRT1 and controls NF-κB and chronic inflammation (Fig. 7). This potential miR-23b-3p/SIRT1/NF-κB feedback loop may play a key role in establishing and maintaining metabolic memory in diabetic retinopathy. As RNA-based therapies hold potential advantages because of their specificity, targeting specific miRNAs in combination therapy may offer a promising strategy for halting the development of diabetic retinopathy and other diabetes complications.
Abbreviations
- Ac-NF-κB:
-
Acetylated-NF-κB
- ChIP:
-
Chromatin immunoprecipitation
- H:
-
High glucose group
- HREC:
-
Human retinal endothelial cell
- miRNA:
-
MicroRNA
- MN:
-
Mannitol + normal glucose group
- N:
-
Normal glucose group
- NF-κB:
-
Nuclear factor κB
- q(RT-PCR):
-
Quantitative (RT-PCR)
- si(RNA):
-
Small interfering (RNA)
- SIRT1:
-
Sirtuin 1
- STZ:
-
Streptozotocin
- 3′-UTR:
-
3′-untranslated region
- WT:
-
Wild type
- NC:
-
Normal control
- LNA:
-
Locked nucleic acid
- ISH:
-
In situ hybridisation
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Funding
This work was supported by grants from the National Natural Science Foundation of China (numbers 81470643, 81271032, 81070739 and 30872828) and the National Key Basic Research Program (2010CB535006).
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The authors declare that there is no duality of interest associated with this manuscript.
Contribution statement
SZ, HCh and ZZ conceived and designed the experiments. SZ, HCh, ZZ, TL, JL, QL, CH, NW, QQ, HCa and XX contributed to the acquisition of data. SZ, HCh, ZZ and XX analysed and interpreted the data. SZ, HCh and ZZ contributed to drafting the article. All authors have revised the manuscript critically for important intellectual content and approved the final version to be published. HCh and ZZ are responsible for the integrity of the work as a whole.
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Zhao, S., Li, T., Li, J. et al. miR-23b-3p induces the cellular metabolic memory of high glucose in diabetic retinopathy through a SIRT1-dependent signalling pathway. Diabetologia 59, 644–654 (2016). https://doi.org/10.1007/s00125-015-3832-0
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DOI: https://doi.org/10.1007/s00125-015-3832-0