Skip to main content
Log in

Search for protein partners of mitochondrial single-stranded DNA-binding protein Rim1p using a yeast two-hybrid system

  • Published:
Folia Microbiologica Aims and scope Submit manuscript

Abstract

RIM1 is a nuclear gene of the yeastSaccharomyces cerevisiae coding for a protein with single-stranded DNA-binding activity that is essential for mitochondrial genome maintenance. No protein partners of Rim1p have been described so far in yeast. To better understand the role of this protein in mitochondrial DNA replication and recombination, a search for protein interactors by the yeast two-hybrid system was performed. This approach led to the identification of several candidates, including a putative transcription factor, Azf1p, and Mph1p, a protein with an RNA helicase domain which is known to influence the mutation rate of nuclear and mitochondrial genomes.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Barros M.H., Nobrega F.G.:YAH1 ofSaccharomyces cerevisiae: a new essential gene that encodes for a protein homologous to human adrenodoxin.Gene 233, 197–203 (1999).

    Article  PubMed  CAS  Google Scholar 

  • Brohl S., Lisowsky T., Riemen G., Michaelis G.: A new nuclear suppressor system for a mitochondrial RNA polymerase mutant identifies an unusual zinc-finger protein and a polyglutamine domain protein inSaccharomyces cerevisiae.Yeast 10, 719–731 (1994).

    Article  PubMed  CAS  Google Scholar 

  • Brown N.G., Costanzo M.C., Fox T.D.: Interactions among three proteins that specifically activate transcription of the mitochondrialCOX3 mRNA inSaccharomyces cerevisiae.Mol.Cell.Biol. 14, 1045–1053 (1994).

    PubMed  CAS  Google Scholar 

  • Cho J.H., Lee Y.K., Chae C.B.: The modulation of the biological activities of mitochondrial histone Abf2p by yeast PKA and its possible role in the regulation of mitochondrial DNA content during glucose repression.Biochim.Biophys.Acta 1522, 175–186 (2001).

    PubMed  CAS  Google Scholar 

  • Dower W.J., Miller J.F., Ragsdale C.W.: High efficiency transformation ofE. coli by high voltage electroporation.Nucl.Acids Res. 16, 6127–6145 (1988).

    Article  PubMed  CAS  Google Scholar 

  • van Dyck E., Foury F., Stillmann B., Brill S.J.: A single-stranded DNA-binding protein for mitochondrial DNA replication inS. cerevisiae is homologous toE. coli SSB.EMBO J. 11, 3421–3430 (1992).

    PubMed  Google Scholar 

  • Entian K.D., Schuster T., Hegemann J.H., Becher D., Feldmann H., Guldener U., Gotz R., Hansen M., Hollenberg C.P., Jansen G., Kramer W., Klein S., Kötter P., Kricke J., Launhardt H., Mannhaupt G., Maierl A., Meyer P., Mewes W., Munder T., Niedenthal R.K., Ramazani-Rad M., Röhme, A., Rose M., Schäfer B., Siegler M.-L., Vetter J., Wilhelm N., Wolf K., Zimmerman F.K., Zollner A., Hinnen A.: Functional analysis of 150 deletion mutants inSaccharomyces cerevisiae by a systematic approach.Mol.Gen.Genet. 262, 683–702 (1999).

    Article  PubMed  CAS  Google Scholar 

  • Estojak J., Brent R., Golemis E.A.: Correlation of two-hybrid affinity data with in vitro measurements.Mol.Cell.Biol. 15, 5820–5829 (1995).

    PubMed  CAS  Google Scholar 

  • Foury F., Kucej M.: Yeast mitochondrial biogenesis: a model system for humans?Curr.Opin.Chem.Biol. 6, 106–111 (2002).

    Article  PubMed  Google Scholar 

  • Foury F., Lahaye A.: Cloning and sequencing of thePIFI gene involved in repair and recombination of yeast mitochondrial DNA.EMBO J. 6, 1441–1449 (1987).

    PubMed  CAS  Google Scholar 

  • Foury F.: Cloning and sequencing of the nuclear geneMIPI encoding the catalytic subunit of the yeast mitochondrial DNA polymerase.J.Biol.Chem. 264, 20552–20560 (1989).

    PubMed  CAS  Google Scholar 

  • Golemis E.A., Brent R.: Searching for interacting proteins with the two-hybrid system III, pp. 43–72 in P.L. Bartel, S. Fields (Eds):The Yeast Two-Hybrid System. Oxford University Press, New York 1997.

    Google Scholar 

  • Greenleaf A.L., Kelly J.L., Lehman I.R.: YeastRPO41 gene product is required for transcription and maintenance of the mitochondrial genome.Proc.Nat.Acad.Sci.USA 83, 3391–3394 (1986).

    Article  PubMed  CAS  Google Scholar 

  • Haucke V., Horst M., Schatz G., Lithgow T.: The Mas20p and Mas70p subunits of the protein import receptor of yeast mitochondria interactvia the tetratricopeptide repeat motif in Mas20p: evidence for a single hetero-oligomeric receptor.EMBO J. 15, 1231–1237 (1996).

    PubMed  CAS  Google Scholar 

  • Ito T., Chiba T., Ozawa R., Yoshida M., Hattori M., Sakaki Y.: A comprehensive two-hybrid analysis to explore the yeast protein interactome.Proc.Nat.Acad.Sci.USA 98, 4269–4274 (2001).

    Article  Google Scholar 

  • Joung J.K., Ramm E.I., Pabo C.O.: A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions.Proc.Nat.Acad.Sci.USA 97, 7382–7387 (2000).

    Article  PubMed  CAS  Google Scholar 

  • Lecrenier N., Foury F.: New features of mitochondrial DNA replication system in yeast and man.Gene 246, 37–48 (2000).

    Article  PubMed  CAS  Google Scholar 

  • Lisowsky T., Michaelis G.: A nuclear gene essential for mitochondrial replication suppresses a defect of mitochondrial transcription inSaccharomyces cerevisiae.Mol.Gen.Genet. 214, 218–223 (1988).

    Article  PubMed  CAS  Google Scholar 

  • Rahman M.U., Hudson A.P.: Substrates for yeast mitochondrial cAMP-dependent protein kinase activity.Biochem.Biophys.Res.Commun. 214, 188–194(1995).

    Article  PubMed  CAS  Google Scholar 

  • Scheller J., Schurer A., Rudolph C., Hettwer S., Kramer, W.:MPH1, a yeast gene encoding a DEAH protein, plays a role in protection of the genome from spontaneous and chemically induced damage.Genetics 155, 1069–1081 (2000).

    PubMed  CAS  Google Scholar 

  • Schwikowski B., Uetz P., Fields S.: A network of protein-protein interactions in yeast.Nature Biotechnol. 18, 1257–1261 (2000).

    Article  CAS  Google Scholar 

  • Sedman T., Kuusk S., Kivi S., Sedman J.: A DNA helicase required for maintenance of the functional mitochondrial genome inSaccharomyces cerevisiae.Mol.Cell.Biol. 20, 1816–1824 (2000).

    Article  PubMed  CAS  Google Scholar 

  • Spelbrink J.N., Li F.Y., Tiranti V., Nikali K., Yuan Q.P., Tariq M., Wanrooij S., Garrido N., Comi G., Morandi L., Santoro L., Toscano A., Fabrizi G.M., Somer H., Croxen R., Beeson D., Poulton J., Suomalainen A., Jacobs H.T., Zeviani M., Larsson C.: Human mitochondrial DNA deletions associated with mutations in the gene encoding Twinkle, a phage T7 gene 4-like protein localized in mitochondria.Nature Genet. 28, 223–231 (2001).

    Article  PubMed  CAS  Google Scholar 

  • Strathern J.N., Higgins D.R.: Recovery of plasmids from yeast intoEscherichia coli: shuttle vectors, p. 322 in C. Guthrie, G.R. Fink (Eds).Guide to Yeast Genetics and Molecular Biology (Meth.Enzymol. 194). Academic Press, San Diego 1991.

    Google Scholar 

  • Stroumbakis N.D., Li Z., Tolias P.P.: RNA- and single-stranded DNA-binding (SSB) proteins expressed duringDrosophila melanogaster oogenesis: a homolog of bacterial and eukaryotic mitochondrial SSBs.Gene 143, 171–177 (1994).

    Article  PubMed  CAS  Google Scholar 

  • Tomáška L’., Nosek J., Fukuhara H.: Identification of a putative mitochondrial telomere-binding protein of the yeastCandida parapsilosis.J.Biol.Chem. 272, 3049–3056 (1997).

    Article  PubMed  Google Scholar 

  • Tomáška L’.: Phosphorylation of mitochondrial telomere binding protein ofCandida parapsilosis by cAMP-dependent protein kinase.Biochem.Biophys.Res.Commun. 242, 457–460 (1998).

    Article  PubMed  Google Scholar 

  • The C. elegansSequencing Consortium: Genome sequence of the nematodeCaenorhabditis elegans. A platform for investigating biology.Science 282, 2012–2018 (1998).

    Article  Google Scholar 

  • Tiranti V., Rocchi M., DiDonato S., Zeviani M.: Cloning of human and rat cDNAs encoding the mitochondrial single-stranded DNA-binding protein (SSB).Gene 126, 219–225 (1993).

    Article  PubMed  CAS  Google Scholar 

  • Van Goethem G., Dermaut B., Lofgren A., Martin J.J., Van Broeckhoven C.: Mutation of POLG is associated with progressive external opthalmoplegia characterized by mtDNA deletions.Nature Genet. 28, 211–212 (2001).

    Article  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to B. Kucejová.

Additional information

This work was supported in part bySlovak Grant Agency VEGA (1/0006/03, 1/9153/02) and APVT (no. 20-003 902), grant fromHoward Hughes Medical Institute (55000327),Fogarty International Research Collaboration Award (1-R03-TW05654-01, CFDA no. 93934),Comenius University Grant (UK/3690/99), grants fromHuman Frontier, theBelgian National Fund for Scientific Research, theEuropean Commission, and theInter-University Poles of Attraction Program of the Belgian Government Office for Scientific, Technical, and Cultural Affairs.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kucejová, B., Foury, F. Search for protein partners of mitochondrial single-stranded DNA-binding protein Rim1p using a yeast two-hybrid system. Folia Microbiol 48, 183–188 (2003). https://doi.org/10.1007/BF02930953

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF02930953

Keywords

Navigation