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Translational readthrough at nonsense mutations in the HSF1 gene of Saccharomyces cerevisme

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Summary

The HSF1 gene of Saccharomyces cerevisiae directs the synthesis of the heat shock transcription factor, HSF. The gene is essential; disruption mutations are lethal. Using a plasmid shuffle screen, we isolated mutations in the HSF1 gene after in vitro mutagenesis of plasmid DNA with hydroxylamine. From a collection of both conditional (temperature-sensitive) and unconditional lethal mutations, we recovered mutations that map exclusively to the 5′ half of the gene. All are nonsense mutations, including conditional mutations that map 5′ to the portion of the HSF1 gene that encodes the DNA-binding domain of the transcription factor. For one such mutation, we demonstrated that the nonsense mutation is subject to translational readthrough, even though there are no known nonsense suppressors in the genetic background of our strain. Our results suggest that the HSF protein is highly tolerant of amino acid changes, a conclusion that is consistent with the very low degree of evolutionary conservation among HSF proteins. Our results also suggest that translational readthrough occurs with moderate efficiency in yeast, particularly when the terminator codon is followed immediately by an A or C residue. This result illustrates that the inference of gene function from mutant phenotype depends critically upon the analysis of a true null allele, and not merely an amber or ochre allele.

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References

  • Alani E, Cao L, Kleckner N (1987) A method for gene disruption that allows repeated use of Ura3 selection in the construction of multiply disrupted yeast strains. Genetics 116:541–545

    Google Scholar 

  • Boeke JD, Lacroute F, Fink GR (1984) A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197:345–347

    Google Scholar 

  • Bonner JJ, Heyward S, Fackenthal DJ (1992) Temperature-dependent regulation of a heterologous transcriptional activation domain fused to yeast HSF. Mol Cell Biol 12:1021–1030

    Google Scholar 

  • Bossi L (1983) Context effects: translation of UAG codon by suppressor tRNA is affected by the sequence following UAG in the message. J Mol Biol 164:73–87

    Google Scholar 

  • Clos J, Westwood JT, Becker PB, Wilson S, Lambert K, Wu C (1990) Molecular cloning and expression of a hexameric Drosophila heat shock factor subject to negative regulation. Cell 63:1085–1097

    Google Scholar 

  • Craig EA, Gross CA (1991) Is hsp70 the cellular thermometer? TIBS 16:135–140

    Google Scholar 

  • Davis T (1990) Genetic analysis of calcium-binding proteins in yeast. In: Smith VL, Dedman JR (eds) Stimulus response coupling: the role of intracellular calcium-binding proteins. CRC Press, Boston, pp 237–249

    Google Scholar 

  • Fujita A, Kikuchi Y, Kuhara S, Misumi Y, Matsumoto S, Kobayashi H (1989) Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins or yeast heat-shock transcription factor. Gene 85:321–328

    Google Scholar 

  • Gietz RD, Sugino A (1988) New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74:527–534

    Google Scholar 

  • Harlow E, Lane D (1988) Antibodies: A laboratory manual. Cold Spring Harbor Press, Cold Spring Harbor, New York

    Google Scholar 

  • Ito H, Jukuda Y, Murata K, Kimura A (1983) Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153:163–168

    Google Scholar 

  • Jakobsen BK, Pelham HRB (1991) A conserved heptapeptide restrains the activity of the yeast heat shock transcription factor. EMBO J 10:369–375

    Google Scholar 

  • Johnston M, Dover J (1987) Mutations that inactivate a yeast transcriptional regulatory protein cluster in an evolutionarily conserved DNA-binding domain. Proc Nat Acad Sci USA 84:2401–2405

    Google Scholar 

  • Johnston M, Dover J (1988) Mutational analysis of the GAL4-encoded transcriptional activator protein of Saccharomyces cerevisiae

  • Jones EW, Fink GR (1982) Regulation of amino acid and nucleotide biosynthesis in yeast. In: The molecular biology of the yeast Saccharomyces, metabolism and Gene Expression. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Karam JD, Speyer JF (1970) Reversible inactivation of T4 is DNA polymerase mutants in vivo. Virology 42:196–203

    Google Scholar 

  • Kopczynski JB (1991) Mutational analysis of the HSF1 gene of Saccharomyces cerevisiae. PhD thesis, Indiana University

  • Kunes S, Ma H, Overbye K, Fox MS, Botstein D (1987) Fine structure recombinational analysis of cloned genes using yeast transformation. Genetics 115:73–81

    Google Scholar 

  • Kuo C, Campbell JL (1983) Cloning of Saccharomyces cerevisiae DNA replication genes: isolation of the CDC8 gene and two genes that compensate for the cdc8-1 mutation. Mol Cell Biol 3:1730–1737

    Google Scholar 

  • Lin JP, Aker M, Sitney KC, Mortimer RK (1986) First position wobble in codon-anticodon pairing: amber suppression by a yeast glutamine tRNA. Gene 49:383–388

    Google Scholar 

  • Lindquist S (1986) The heat shock response. Annu Rev Biochem 55:1151–1191

    Google Scholar 

  • Ma J, Ptashne M (1987). A new class of yeast transcriptional activators. Cell 51:113–119

    Google Scholar 

  • Maniatis T, Fritsch EF, Sambrook J (1982) Molecular cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Miller JH, Albertini AM (1983) Effects of surrounding sequence on the suppression of nonsense codons. J Mol Biol 164:59–71

    Google Scholar 

  • Nieto-Sotelo J, Wiederrecht G, Okuda A, Parker CS (1990) The yeast heat shock transcription factor contains a transcriptional activation domain whose activity is repressed under nonshock conditions. Cell 62:817–907

    Google Scholar 

  • Pure GA, Robinson GW, Naumovski L, Friedberg EC (1985) Partial suppression of an ochre mutation in Saccharomyces cerevisiae by multicopy plasmids containing normal yeast tRNAG1n gene. J Mol Biol 183:31–42

    Google Scholar 

  • Rabindran SK, Giorgi G, Clos J, Wu C (1991) Molecular cloning and expression of a human heat shock factor, HSF1. Proc Nat Acad Sci USA 88:6906–6910

    Google Scholar 

  • Ratzkin B, Carbon J (1977) Functional expression of cloned yeast DNA in Escherichia coli. Proc Nat Acad Sci USA 74:487–491

    Google Scholar 

  • Sambrook JT, Fritsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual, 2nd ed Cold Spring Harbor Laboratory, Press, Cold Spring Harbor, New York

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    Google Scholar 

  • Scharf K-D, Rose S, Zott W, Schöff F, Nover L (1990) Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J 9:4495–4501

    Google Scholar 

  • Schatz PJ, Solomon F, Botstein D (1988) Isolation and characterization of conditional-lethal mutations in the TUB1 alpha-tubulin gene of the yeast Saccharomyces cerevisiae. Genetics 120:681–695

    Google Scholar 

  • Schuetz TJ, Gallo GJ, Sheldon L, Tempst P, Kingston RE (1991) Isolation of a cDNA for HSF2: Evidence for two heat shock factor genes in humans. Proc Natl Acad Sci USA 88:6911–6915

    Google Scholar 

  • Scotti PD (1971) The behavior of temperature-sensitive T4 DNA polymerase mutants in temperature shift experiments. Virology 43:366–374

    Google Scholar 

  • Serrano R, Montesinos C, Cid A (1986) A temperature-sensitive mutant of the yeast plasma membrane ATPase obtained by in vitro mutagenesis. FEBS Lett 208:143–146

    Google Scholar 

  • Sherman F, Fink G, Hicks J (1979) Methods in yeast genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Sorger PK (1990) Yeast heat shock factor contains separable transient and sustained response transcriptional activators. Cell 62:793–805

    Google Scholar 

  • Sorger PK, Lewis MJ, Pelham HRB (1987) Heat shock factor is regulated differently in yeast and HeLa cells. Nature 329:981–84

    Google Scholar 

  • Sorger PK, Nelson HCM (1989) Trimerization of a yeast transcriptional activator via a coiled-coil motif. Cell 59:807–813

    Google Scholar 

  • Sorger PK, Pelham HRB (1987) Purification and characterization of a heat-shock element binding protein from yeast. EMBO J 6:3035–3041

    Google Scholar 

  • Sorger PK, Pelham HRB (1988) Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation. Cell 54:855–864

    Google Scholar 

  • Wei R, Wilkinson H, Pfeifer K, Schneider C, Young R, Guarente L (1986) Two or more copies of Drosophila heat shock consensus sequences serve to activate transcription in yeast. Nucleic Acids Res 14:8183–8187

    Google Scholar 

  • Weiss WA, Edleman I, Culbertson MR, Friedberg EC (1987) Physiological levels of normal tRNA (CAAG1n) can affect partial suppression of amber mutations in the yeast Saccharomyces cerevisiae. Proc Natl Acad Sci USA 84:8031–8034

    Google Scholar 

  • Weiss WA, Friedberg EC (1986) Normal yeast tRNA (CAGG1n) can suppress amber codons and is encoded by an essential gene. J Mol Biol 192:725–735

    Google Scholar 

  • Wiederrecht G, Seto D, Parker CS (1988) Isolation of the gene encoding the S. cerevisiae heat shock transcription factor. Cell 54:841–853

    Google Scholar 

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Kopczynski, J.B., Raff, A.C. & Bonner, J.J. Translational readthrough at nonsense mutations in the HSF1 gene of Saccharomyces cerevisme . Molec. Gen. Genet. 234, 369–378 (1992). https://doi.org/10.1007/BF00538696

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