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Macronuclear DNA organization and transcription in Paramecium primaurelia

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Abstract

Macronuclear DNA was isolated from Paramecium primaurelia, stock 168. Although the macronucleus is polyploid to the extent of 840C, in other respect the DNA appears to be simply organized, having neither satellite sequences nor substantial amounts of intermediately repetitive sequence. The sequence complexity of macronuclear DNA is quite low for a eukaryote cell, being approximately 19 times more complex than the genome of Escherichia coli. In addition, the GC content is low (25%) and the isolated DNA molecules have lengths mostly in the range 0.2–5 μm. In these various respects, the macronuclear DNA of Paramecium is similar to that of other ciliates. A clone of Paramecium cultured under controlled conditions contains polyadenylated RNA sequences which are homologous to 5–8% of the macronuclear DNA. Sequence complexity analysis indicates that the polyadenylated RNA contains two abundance classes of molecules, one present at low frequency and transcribed from approximately 104 genes, the other at 100 times greater concentration and transcribed from about 100 genes. The relevance of these results to the control of gene expression in Paramecium is discussed.

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References

  • Allen, S.L., Gibson, J.: Purification of DNA from the genomes of Paramecium aurelia and Tetrahymena pyriformis. J. Protozool. 18, 518–525 (1971)

    Google Scholar 

  • Allen, S.L., Gibson, J.: Genome amplification and gene expression in the ciliate macronucleus. Biochem. Genet. 6, 292–313 (1972)

    Google Scholar 

  • Ammermann, D.: Morphology and development of the macronuclei of the ciliates Stylonychia mytilus and Euplotes aediculatus. Chromosoma (Berl.) 33, 209–238 (1971)

    Google Scholar 

  • Ammermann, D., Steinbrück, G., Berger, L. von, Hennig, W.: The development of the macronucleus in the ciliated protozoan Stylonychia mytilus. Chromosoma (Berl.) 45, 401–429 (1974)

    Google Scholar 

  • Axel, R., Feigelson, P., Schutz, G.: Analysis of the complexity and diversity of mRNA from chicken liver and oviduct. Cell 7, 247–254 (1976)

    Google Scholar 

  • Behme, R.J., Berger, J.D.: DNA content of Paramecium aurelia stock 51. J. Protozool. 17, 20a (1970)

  • Bishop, J.O.: The gene numbers game. Cell 2, 81–86 (1974)

    Google Scholar 

  • Bishop, J.O., Morton, J.G., Rosbash, M., Richardson, M.: Three abundance classes in HeLa cell messenger RNA. Nature (Lond.) 250, 199–294 (1974)

    Google Scholar 

  • Britten, R.J., Davidson, E.H.: Gene regulation for higher cells: a theory. Science 165, 349–358 (1969)

    Google Scholar 

  • Cairns, J.: The chromosome of Escherichia coli. Cold Spr. Harb. Symp. quant. Biol. 28, 43–46 (1963)

    Google Scholar 

  • Christianson, E.G.: Studies on mRNA during the cell cycle in synchronised mass cultures of Tetrahymena pyriformis GL by hybridisation. J. Protozool. 17, 496–501 (1970)

    Google Scholar 

  • Commerford, S.L.: Iodination of nucleic acids in vitro. Biochemistry 10, 1993–1999 (1971)

    Google Scholar 

  • Cummings, D.J.: Isolation and partial characterisation of macro- and micronuclei of Paramecium. J. Cell Biol. 53, 105–115 (1972)

    Google Scholar 

  • Cummings, D.J.: Studies on macronuclear DNA from Paramecium aurelia. Chromosoma (Berl.) 53, 191–208 (1975)

    Google Scholar 

  • Cummings, D.J., Tait, A.: The isolation of nuclei from Paramecium aurelia. In: Methods in cell biology (D.M. Prescott, ed.), vol. 9, pp. 281–309. New York, London: Academic Press (1975)

    Google Scholar 

  • Darnborough, C., Legan, S., Hunt, T., Jackson, R.J.: Initiation of protein synthesis: Evidence for messenger RNA-independent binding of methionyl-transfer RNA to the 40S ribosomal subunit. J. molec. Biol. 76, 379–403 (1973)

    Google Scholar 

  • Davidson, E.H., Britten, R.J.: Organisation, transcription and regulation in the animal genome. Quart. Rev. Biol. 48, 565–613 (1973)

    Google Scholar 

  • Davidson, E.H., Klein, W.H., Britten, R.J.: Sequence organisation in animal DNA and a speculation on hnRNA as a co-ordinate regulatory transcript. Develop. Biol. 55, 69–84 (1977)

    Google Scholar 

  • Elsevier, S.M., Lipps, HJ., Steinbrück, G.: Histone genes in macronuclear DNA of the ciliate Stylonychia mytilus. Chromosoma (Berl.) 69, 291–306 (1978)

    Google Scholar 

  • Findley, R.C., Gall, J.G.: Free ribosomal RNA genes in Paramecium are tandemly repeated. Proc. nat. Acad. Sci (Wash.) 75, 3312–3316 (1978)

    Google Scholar 

  • Gall, J.B.: Free ribosomal RNA genes in the macronucleus of Tetrahymena. Proc. nat. Acad. Sci. (Wash.) 71, 3078–3081 (1974)

    Google Scholar 

  • Gibson, I., Martin, N.: DNA amounts in the nuclei of Paramecium aurelia and Tetrahymena pyriformis. Chromosoma (Berl.) 35, 374–382 (1971)

    Google Scholar 

  • Gummerson, K.S., Williamson, R.: Sequence divergence of mammalian globin messenger RNA. Nature (Lond.) 247, 265–267 (1974)

    Google Scholar 

  • Hruby, D.E., Maki, R.A., Cummings, D.J.: Isolation and characterisation of mRNA from Paramecium aurelia. Biochim. biophys. Acta (Amst.) 477, 89–96 (1977)

    Google Scholar 

  • Hunt, T., Vanderhof, G., London, I.M.: Control of globin synthesis: the role of heme. J. molec. Biol. 66, 471–481 (1972)

    Google Scholar 

  • Kloetzel, J.A.: Compartmentalisation of the developing macronucleus following conjugation in Stylonychia and Euplotes. J. Cell Biol. 47, 395–407 (1970)

    Google Scholar 

  • Laird, C.D.: Chromatid structure: Relationship between DNA content and nucleotide sequence diversity. Chromosoma (Berl.) 32, 378–406 (1971)

    Google Scholar 

  • Lauth, M.R., Spear, B.B., Heumann, J., Prescott, D.M.: DNA of ciliated protozoa: DNA sequence diminution during macronuclear development of Oxytricha. Cell 7, 67–74 (1976)

    Google Scholar 

  • Lawn, R.M., Heumann, J.M., Herrick, G., Prescott, D.M.: The gene-size DNA molecules in Oxytricha. Cold Spr. Harb. Symp. quant. Biol. 42, 483–92 (1978)

    Google Scholar 

  • Lewin, B.: Units of transcription and translation: sequence components of heterogenous nuclear RNA and messenger RNA. Cell 4, 77–93 (1975)

    Google Scholar 

  • Lipps, H.J., Steinbrück, G.: Free genes for rRNAs in the macronuclear genome of the ciliate Stylonychia mytilus. Chromosoma (Berl.) 69, 21–26 (1978)

    Google Scholar 

  • Mandel, M., Marmur, J.: Use of ultraviolet absorbence temperature profile for determining the guanine plus cytosine content of DNA. In: Methods in enzymology (L. Grosman and K. Moldave (eds.), vol. 12B, pp. 195–206, 1968

  • Mandel, M., Schildkraut, C.L., Marmur, J.: Use of CsCl density gradient analysis for determining the guanine plus cytosine content of DNA. In: Methods in enzymology (L. Grossman and K. Moldave, eds.), vol. 12B, pp. 184–195, 1968

  • Murti, K.D.: Electron-microscopic observations on the macronuclear development of Stylonychia mytilus and Tetrahymena pyriformis (Ciliophora — Protozoa). J. Cell Sci. 13, 479–509 (1973)

    Google Scholar 

  • Pelvat, B., de Haller, G.: Macronuclear DNA in Stentor coeruleus: a first approach to its characterisation. Genet. Res. (Camb.) 27, 277–289 (1976)

    Google Scholar 

  • Preer, J.R.: Genetics of protozoa. In: Research in protozoology (Tze-Tuen Chen, ed.), vol. 3, pp. 130–278, 1968

  • Prescott, D.M., Bostock, C., Gamow, E., Lauth, M.R.: Characterisation of rapidly labelled RNA in Tetrahymena pyriformis. Exp. Cell Res. 67, 124–128 (1971)

    Google Scholar 

  • Prescott, D.M., Murti, K.G., Bostock, C.J.: Genetic apparatus of Stylonychia sp. Nature (Lond.) 242, 596–600 (1973)

    Google Scholar 

  • Raikov, I.B.: Evolution of macronuclear organisation. Ann. Rev. Genet. 10, 413–440 (1976)

    Google Scholar 

  • Skoczylas, B., Soldo, A.T.: Separation and purification of macronuclei from macronuclear fragments and micronuclei in the ciliate Paramecium aurelia. Exp. Cell Res. 90, 143–152 (1975)

    Google Scholar 

  • Soldo, A.T., Godoy, G.A.: The kinetic complexity of Paramecium macronuclear deoxyribonucleic acid. J. Protozool. 19, 673–678 (1972)

    Google Scholar 

  • Soldo, A.T., van Wagtendonk, W.J., Godoy, G.A.: Nucleic acid and protein content of purified endosymbiotic particles of Paramecium aurelia. Biochem. Biophys. Acta (Amst.) 204, 325–333 (1970)

    Google Scholar 

  • Sommerville, J.: Serotype expression in Paramecium. In: Advances in Microbial Physiology (A.H. Rose and J.F. Wilkinson, eds.), vol.4, pp. 131–178. London: Academic Press 1970

    Google Scholar 

  • Sommerville, J., Malcolm, D.B.: Transcription of genetic information in amphibian oocytes. Chromosoma (Berl.) 55, 183–208 (1976)

    Google Scholar 

  • Studier, F.R.: Sedimentation studies of the size and shape of DNA. J. molec. Biol. 11, 373–390 (1965)

    Google Scholar 

  • Trendelenburg, M.F., Scheer, U., Zentgraf, H., Franke, W.W.: Heterogeneity of spacer lengths in circles of amplified ribosomal DNA of two insect species, Dytiscus marginalis and Acheta domesticus. J. molec. Biol. 108, 453–470 (1976)

    Google Scholar 

  • Woodard, J., Woodard, W., Gelber, B., Swift, H.: Cytochemical studies of conjugation in Paramecium aurelia. Exp. Cell Res. 41, 55–63 (1966)

    Google Scholar 

  • Yao, M., Gorovsky, M.A.: Comparison of the sequences of macro- and micronuclear DNA of Tetrahymena pyriformis. Chromosoma (Berl.) 48, 1–18 (1974)

    Google Scholar 

Download references

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McTavish, C., Sommerville, J. Macronuclear DNA organization and transcription in Paramecium primaurelia . Chromosoma 78, 147–164 (1980). https://doi.org/10.1007/BF00328389

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