Skip to main content
Log in

The hisR locus of Salmonella: Nucleotide sequence and expression

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

In S. typhimurium, the hisR locus is defined by mutations causing reduced levels of the histidine tranfer RNA. As a preliminary step in the analysis of the hisR mutants, a 972 bp DNA fragment containing the histidine tRNA gene from wild-type Salmonella was cloned and completely sequenced. This analysis revealed the existence of a tRNA gene cluster which, in addition to the tRNAHis gene, includes the genes for tRNA Leu1 , tRNA Pro1 and a tentative tRNA ArgCGG . All four tRNA genes are present as single copies and are separated by spacer sequences ranging from 20 to 53 bp in length. The gene cluster is efficiently transcribed in vitro by E. coli RNA polymerase and yields a transcript, approximately 480 nucleotides long, which contains all four tRNA sequences. This tetrameric precursor can be processed to 4S RNA in vitro with a wild-type Salmonella extract, but not with an extract prepared from a hisU (RNase P) mutant. Using portions of the tRNA gene cluster as specific hybridization probes, various processing intermediates were shown to accumulate in vivo in the hisU mutant. Most of these RNAs are monomeric precursors only a few nucleotides longer than the respective mature tRNA species.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Allaudeen HS, Yang SK, Söll D (1972) Leucine tRNA1 from hisT mutant of Salmonella typhimurium lacks two pseudouridines. FEBS Lett 28:205–208

    Google Scholar 

  • Alwine JC, Kemp DJ, Stark GR (1977) Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes. Proc Natl Acad Sci USA 74:5350–5354

    Google Scholar 

  • Anton D (1968) Histidine regulatory mutants in Salmonella typhimurium V. Two new classes of histidine regulatory mutants. J Mol Biol 33:533–546

    Google Scholar 

  • Barnes WM (1978) DNA sequence from the histidine operon control region: seven histidine codons in a row. Proc Natl Acad Sci USA 75:4281–4285

    Google Scholar 

  • Benton WD, Davis RW (1977) Screening λgt recombinant clones by hybridization to single plaques in situ. Science 196:180–182

    Google Scholar 

  • Borck K, Beggs JD, Brammar WJ, Hopkins AS, Murray NE (1976) The construction in vitro of transducing derivatives of phage lambda. Mol Gen Genet 146:199–207

    Google Scholar 

  • Bossi L, Cortese R (1977) Biosynthesis of tRNA in histidine regulatory mutants of Salmonella typhimurium. Nucleic Acids Res 4:1945–1956

    Google Scholar 

  • Bossi L, Ciampi MS, Cortese R (1978) Characterization of a Salmonella typhimurium hisU mutant defective in tRNA precursor processing. J Bacteriol 134:612–620

    Google Scholar 

  • Bossi L, Roth JR (1981) Four-base codons ACCA, ACCU and ACCC are recognized by frameshift suppressor sufJ. Cell 25:489–496

    Google Scholar 

  • Bossi L, Ciampi MS (1983) The expression of prokaryotic tRNA genes in frog oocytes. Nucleic Acids Res 11:3207–3226

    Google Scholar 

  • Brenner M, Ames BN (1972) Histidine regulation in Salmonella typhimurium IX. Histidine transfer ribonucleic acid of the regulatory mutants. J Biol Chem 247:1080–1088

    Google Scholar 

  • Bruce AG, Uhlenbeck OC (1978) Reactions at the termini of tRNA with T4 RNA ligase. Nucleic Acids Res 5:3665–3677

    Google Scholar 

  • Chang S, Carbon J (1975) The nucleotide sequence of a precursor to a glycine-and threonine-specific transfer ribonucleic acids of Escherichia coli. J Biol Chem 250:5542–5555

    Google Scholar 

  • Davis RW, Botstein D, Roth JR (1980) Advanced bacterial genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Duester G, Camen RK, Holmes WM (1981) Nucleotide sequence of an Escherichia coli tRNA (Leu1) operon and identification of the transcription promoter signal. Nucleic Acids Res 9:2121–2139

    Google Scholar 

  • Duester G, Elford RM, Holmes WM (1982) Fusion of the Escherichia coli tRNA Leu1 promoter to the galK gene: analysis of sequences necessary for growth-rate-dependent regulation. Cell 30:855–864

    Google Scholar 

  • Fukada K, Abelson J (1980) DNA sequence of a T4 transfer RNA gene cluster. J Mol Biol 139:377–391

    Google Scholar 

  • Gronenborg B, Messing J (1978) Methylation of single-stranded DNA in vitro introduces new restriction endonuclease cleavage sites. Nature 272:375–377

    Google Scholar 

  • Guthrie C, Seidman JG, Comer MM, Bock RM, Schmidt FJ, Barrel BG, McClain WH (1974) The biology of bacteriophage T4 transfer RNAs. Brookhaven Symp Biol 26:106–123

    Google Scholar 

  • Guthrie C, McClain WH (1979) Rare transfer ribonucleic acid essential for phage growth. Nucleotide sequence comparison of normal and mutant T4 isoleucine-accepting transfer ribonucleic acid. Biochemistry 18:3786–3795

    Google Scholar 

  • Hudson L, Rossi J, Landy A (1981) Dual function transcripts specifying tRNA and mRNA. Nature 294:422–427

    Google Scholar 

  • Hu N, Messing J (1982) The making of strand-specific M13 probes. Gene 17:271–277

    Google Scholar 

  • Johnston HM, Barnes WM, Chumley FG, Bossi L, Roth JR (1980) Model for regulation of the histidine operon of Salmonella. Proc Natl Acad Sci USA 77:508–512

    Google Scholar 

  • Lewis JA, Ames BN (1972) Histidine regulation in Salmonella typhimurium XI. The percentage of transfer RNAHis charged in vivo and its relation to the repression of the histidine operon. J Mol Biol 66:131–142

    Google Scholar 

  • Maxam AM, Gilbert W (1980) Sequencing end-labelled DNA with base-specific chemical cleavages.In: Grossman L, Moldave K (eds) Methods in enzymology, vol. 65. Academic Press, New York, pp 499–560

    Google Scholar 

  • Messing J, Gronenborg B, Müller-Hill B, Hofschneider PH (1977) Filamentouscoliphage M13 as a cloning vehicle: insertion of a HindII fragment of the lac regulatory region in M13 replicative form in vitro. Proc Natl Acad Sci USA 74:3642–3646

    Google Scholar 

  • Post LE, Arfsten AE, Davis GR, Nomura M (1980) DNA sequence of the promoter region for the α ribosomal protein operon in Escherichia coli. J Biol Chem 255:4653–4659

    Google Scholar 

  • Rivera MJ, Smits MA, Quint W, Schoenmakers JG, Konings RNH (1978) Expression of bacteriophage M13 DNA in vivo. Localization of the transcription initiation and termination signal of the mRNA coding for the major capsid protein. Nuleic Acids Res 5:2895–2912

    Google Scholar 

  • Rosenberg M, Court D (1979) Regulatory sequences involved in the promotion and termination of RNA transcription. Ann Rev Genet 13:319–353

    Google Scholar 

  • Roth JR, Anton DN, Hartman PE (1966) Histidine regulatory mutants in Salmonella typhimurium I. Isolation and general properties. J Mol Biol 22:305–323

    Google Scholar 

  • Rothstein RJ, Lau LF, Bahl CP, Narang SA, Wu R (1979) Synthetic adaptors for cloning DNA. In: Wu R (ed) Methods in enzymology vol 68. Academic Press, New York, pp 98–109

    Google Scholar 

  • Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467

    Google Scholar 

  • Schedl P, Primakoff P (1973) Mutants of Escherichia coli thermosensitive for the synthesis of transfer RNA. Proc Natl Acad Sci USA 70:2091–2095

    Google Scholar 

  • Schedl P, Primakoff P, Rogerts J (1974) Processing of E. coli tRNA precursors. Brookhaven Symp Biol 26:53–76

    Google Scholar 

  • Sckiya T, Khorana HG (1974) Nucleotide sequence in the promoter region of the Escherichia coli tyrosine tRNA gene. Proc Natl Acad Sci USA 71:2978–2982

    Google Scholar 

  • Silbert DF, Fink JR, Ames BN (1966) Histidine regulatory mutants in Salmonella typhimurium III. A class of regulatory mutants deficient in tRNA for histidine. J Mol Biol 22:335–347

    Google Scholar 

  • Singer CE, Smith GR (1972) Histidine regulation in Salmonella typhimurium XIII. Nucleotide sequence of histidine transfer ribonucleic acid. J Biol Chem 247:2989–3000

    Google Scholar 

  • Sprinzl M, Gauss DH (1983) Compilation of tRNA sequences. Nucleic Acids Res 11:r1-r53

    Google Scholar 

  • Travers AA (1980) A tRNATyr promoter with an altered in vitro response to ppGpp. J Mol Biol 141:91–97

    Google Scholar 

  • Travers AA, Lamond AI, Mace HAF (1982) ppGpp regulates the binding of two RNA polymerase molecules to the tyrT promoter. Nucleic Acids Res 10:5043–5057

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by G.R. Smith

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bossi, L. The hisR locus of Salmonella: Nucleotide sequence and expression. Molec Gen Genet 192, 163–170 (1983). https://doi.org/10.1007/BF00327662

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00327662

Keywords

Navigation