Skip to main content
Log in

The structure of subtilisin ALP I from alkalophilic Bacillus sp. NKS-21

  • Published:
Current Microbiology Aims and scope Submit manuscript

Abstract

The gene for an alkaline serine protease from alkalophilic Bacillus sp. NKS-21 (subtilisin ALP I) was cloned, and its nucleotide sequence was determined. The gene (aprQ) contained an open reading frame of 1125 bp, encoding a primary product of 374 amino acids. The mature protease, composed of 272 amino acids, was preceded by a putative signal sequence of 37 amino acids and a pro-sequence of 65 amino acids. The mature protease conserved the catalytic triad, Asp, His, and Ser, as subtilisin BPN′ or other subtilisins, and the subtilisin ALP I might belong to the subtilisin super family. The primary structure of subtilisin ALP I was compared and discussed with those of 13 subtilisins, 5 subtilisins from alkalophilic Bacillus, and 8 from neutrophiles. Low homology was shown between subtilisin ALP I and subtilisins from alkalophiles or subtilisins from neutrophiles. Forty-five amino acid residues of the mature protein of subtilisin ALP I were entirely independent of other subtilisins. According to the homology of ALP I with other subtilisins, subtilisin ALP I might be in the middle point between alkaline subtilisins and neutral ones.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Literature Cited

  1. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1987) Current protocols in molecular biology, vol 1. New York, Chichester, Brisbane, Toronto, Singapore: Greene Associates and Wiley-Interscience

    Google Scholar 

  2. Betzel C, Klupsch S, Papendorf G, Hastrup S, Branner S, Wilson KS (1992) Crystal structure of the alkaline proteinase Savinase from Bacillus lentus at 1.4 Å resolution. J Mol Biol 223:427–445

    Google Scholar 

  3. Heijne GV (1986) A new method for predicting signal sequence cleavage sites. Nucleic Acids Res 14:4683–4690

    Google Scholar 

  4. Hewick RM, Hunkapiller MW, Hood LE, Dreyer WJ (1981) A gas-liquid solid phase peptide and protein sequenator. J Biol Chem 256:7990–7997

    Google Scholar 

  5. Jacobs M, Eliasson M, Uhlen M, Flock J-I (1985) Cloning, sequencing and expression of subtilisin Carlsberg from Bacillus licheniformis. Nucleic Acids Res 13:8913–8926

    Google Scholar 

  6. Jang JS, Kang DO, Chun MJ, Byun SM (1992) Molecular cloning of a subtilisin J gene from Bacillus stearothermophilus and its expression in Bacillus subtilis. Biochem Biophys Res Commun 184:277–282

    Google Scholar 

  7. Kaneko R, Koyama N, Tsai Y-C, Juang R-Y, Yoda K, Yamazaki M (1989) Molecular cloning of the structural gene for alkaline elastase YaB, a new subtilisin produced by alkalophilic Bacillus strain. J Bacteriol 171:5232–5236

    Google Scholar 

  8. von der Laan JC, Gerritse G, Mulleners LJSM, von der Hoek RAC, Quax WJ (1991) Cloning, characterization, and multiple chromosomal integration of a Bacillus alkaline protease gene. Appl Environ Microbiol 57:901–909

    Google Scholar 

  9. Moran Jr CP, Lang N, LeGrice SFJ, Lee G, Stephens M, Sonenshein AL, Pero J, Losick R (1982) Nucleotide sequences that signal the initiation of transcription and translation in Bacillus subtilis. Mol Gen Genet 186:339–346

    Google Scholar 

  10. Nakamura T, Yamagata Y, Ichishima E (1992) Nucleotide sequence of the subtilisin NAT gene, aprN, of Bacillus subtilis (natto). Biosci Biotechnol Biochem 56:1869–1871

    Google Scholar 

  11. Nedkov P, Obserthuer W, Braunitzer G (1985) Determination of the complete amino acid sequence of subtilisin DY and its comparison with the primary structure of the subtilisin BPN′, Carlsberg and amylosacchariticus. Biol Chem Hoppe-Seyler 366:421–430

    Google Scholar 

  12. Saito H, Miura K (1963) Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72:619–629

    Google Scholar 

  13. Shinde U, Li Y, Chatterjee S, Inouye M (1993) Folding pathway mediated by an intramolecular chaperone. Proc Natl Acad Sci USA 90:6924–6928

    Google Scholar 

  14. Shine J, Dalgarno L (1974) The 3′-terminal sequence of Escherichia coli 16 S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci USA 71:1342–1346

    Google Scholar 

  15. Silen JL, Agard DA (1989) The α-lytic protease pro-region does not require a physical linkage to activate the proteae domain in vivo. Nature 341:462–464

    Google Scholar 

  16. Stahl ML, Ferrari E (1984) Replacement of the Bacillus subtilis subtilisin structural gene with an in vitro derived deletion mutation. J Bacteriol 158:411–418

    Google Scholar 

  17. Svendsen I, Genov N, Idakieva K (1986) Complete amino acid sequence of alkaline mecentericopeptidase. FEBS Lett 196:228–232

    Google Scholar 

  18. Takami H, Kobayashi T, Kobayashi M, Yamamoto M, Nakamura S, Aono R, Horikoshi K (1992) Molecular cloning, nucleotide sequence, and expression of the structural gene for alkaline serine protease from alkaliphilic Bacillus sp. 221. Biosci Biotechnol Biochem 56:1455–1460

    Google Scholar 

  19. Tsuchida O, Yamagata Y, Ishizuka T, Arai T, Yamada J, Takeuchi M, Ichishima E (1986) An alkaline proteinase of an alkalophilic Bacillus sp. Curr Microbiol 14:7–12

    Google Scholar 

  20. Vieira J, Messing J (1987) Production of single-stranded plasmid DNA. In: Wu R, Grossman L (ed) Methods Enzymol 153:3–11

  21. Wells JA, Ferrari E, Henner DJ, Estell DA, Chen EY (1983) Cloning, sequencing, and secretion of Bacillus amyloliquefaciens subtilisin in Bacillus subtilis. Nucleic Acids Res 11:7911–7925

    Google Scholar 

  22. Yamagata Y, Ichishima E (1989) A new alkaline proteinase with pI 2.8 from alkalophilic Bacillus sp. Curr Microbiol 19:259–264

    Google Scholar 

  23. Yamagata Y, Isshiki K, Ichishima E (1993) Subtilisin Sendai from alkalophilic Bacillus sp.: Molecular and enzymatic properties of the enzyme and molecular cloning and characterization of the gene, aprS. Enz Microbial Technol (in press)

  24. Yamaguchi M, Hanzawa S, Hirano K, Yamagata Y, Ichishima E (1993) Specificity and molecular properties of penicillolysin, a metalloproteinase from Penicillium citrinum. Phytochemistry 33:1317–1321

    Google Scholar 

  25. Yang JT, Wu C-SC, Martinez HM (1986) Calculation of protein conformation from circular dichroism. Methods Enzymol 130:208–269

    Google Scholar 

  26. Yoshimoto T, Oyama H, Honda T, Tone H, Takeshita T, Kamiyama T, Tsuru D (1988) Cloning and expression of subtilisin amylosacchariticus gene. J Biochem 103:1060–1065

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Yamagata, Y., Sato, T., Hanzawa, S. et al. The structure of subtilisin ALP I from alkalophilic Bacillus sp. NKS-21. Current Microbiology 30, 201–209 (1995). https://doi.org/10.1007/BF00293634

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00293634

Keywords

Navigation