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Large unidentified open reading frame in plastid DNA (ORF2280) is expressed in chloroplasts

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Abstract

The chloroplast DNA encodes genes for components of photosynthesis and the transcription-translation machinery; a number of unidentified open reading frames (ORFs) are also present. To determine whether a large ORF in the inverted repeat of chloroplast DNA of tobacco (ORF2280) encodes a chloroplast protein, a conserved region of the ORF was expressed in Escherichia coli. An antibody against the ORF protein was prepared using the purified fusion protein as an antigen. When incubated with proteins from the soluble fraction of tobacco, spinach and Oenothera chloroplasts, the antiserum detects relatively labile polypeptides, which have apparent molecular weights of 170 to 180 kDa. The ORF in tobacco and spinach is large enough to encode a protein of 240–250 kDa, thus it is possible that post-transcriptional or post-translational processing reduces the size of the expression product. Analysis of Oenothera chloroplasts representing four different plastome types revealed endonuclease restriction fragment length polymorphisms in chloroplast DNA indicative of insertion/deletion events in a region of the chloroplast DNA that shared significant sequence similarity with ORF2280. The ORF2280 antiserum was used to demonstrate that there are qualitative differences in the ORF proteins from different Oenothera plastome types.

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References

  1. Ahearn JMJr, Bartolomei MS, West ML, Cisek LJ, Corden JL: Cloning and sequence analysis of the mouse genomic locus encoding the largest subunit of RNA polymerase II. J Biol Chem 262: 10695–10705 (1987).

    PubMed  Google Scholar 

  2. Anderson JM: Photoregulation of the composition, function, and structure of thylakoid membranes. Annu Rev Plant Physiol 37: 93–136 (1986).

    Google Scholar 

  3. Blasko K, Kaplan SA, Higgins KG, Wolfson R, Sears BB: Variation in copy number of a 24-base pair tandem repeat in the chloroplast DNA of Oenothera hookeri strain Johansen. Curr Genet 14: 287–292 (1988).

    PubMed  Google Scholar 

  4. Darr SC, Somerville SC, Arntzen CJ: Monoclonal antibodies to the light-harvesting chlorophyll a/b protein complex of photosystem II. J Cell Biol 103: 733–740 (1986).

    Article  PubMed  Google Scholar 

  5. dePamphilis CW, Palmer JD: Loss of photosynthetic and chlororespiratory genes from the plastid genome of parasitic flowering plant. Nature 348: 337–339 (1990).

    Article  PubMed  Google Scholar 

  6. Epstein E: Mineral Nutrition of Plants: Principles and Perspectives. John Wiley, New York, p. 39 (1972).

    Google Scholar 

  7. Gordon KHJ, Crouse EJ, Bohnert HJ, Herrmann RG: Physical mapping of differences in chloroplast DNA of the five wild-type plastomes in Oenothera subsection Euoenothera. Theor Appl Genet 61: 281–296 (1982).

    Google Scholar 

  8. Greenberg BM, Narita JO, DeLuca-Flaherty C, Gruissem W, Rushlow KA, Hallick RB: Evidence for two RNA polymerase activities in Euglena gracilis chloroplasts. J Biol Chem 259: 14880–14887 (1984).

    PubMed  Google Scholar 

  9. Gruissem W, Greenberg BM, Zurawski G, Hallick RB: Chloroplast gene expression and promoter identification in chloroplast extracts. In: Weissbach A, Weissbach H (eds) Methods in Enzymology, vol. 118, pp. 253–270. Academic Press, New York (1986).

    Google Scholar 

  10. Hellebust H, Murby M, Abrahmsen L, Uhlen M, Enfors S-O: Different approaches to stabilize a recombinant fusion protein. Bio/technology 7: 165–168 (1989).

    Article  Google Scholar 

  11. Hellebust H, Viede A, Enfors S-O: Proteolytic degradation of fused protein A-beta-galactosidase in Escherichia coli. J. Biotechnol 7: 185–198 (1988).

    Article  Google Scholar 

  12. Herdenberger F, Weil J-H, Steinmetz A: Organization and nucleotide sequence of the broad bean chloroplast genes trnL-UAG, ndhF and two unidentified open reading frames. Curr Genet 14: 609–615 (1988).

    PubMed  Google Scholar 

  13. Hiratsuka J, Shimada H, Whittier R, Ishibashi T, Sakamoto M, Mori M, Kondo C, Honji Y, Sun C-R, Meng B-Y, Li Y-Q, Kanno A, Nishizawa Y, Hirai A, Shinozaki K, Sugiura M: The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol Gen Genet 217: 185–194 (1989).

    PubMed  Google Scholar 

  14. Igloi GL, Meinke A, Doery I, Koessel H: Nucleotide sequence of the maize chloroplast rpo B/C1/C2 operon: comparison between the derived protein primary structures from various organisms with respect to functional domains. Mol Gen Genet 221: 379–394 (1990).

    Article  PubMed  Google Scholar 

  15. Jess W, Hammer A, Cornelissen AWCA: Complete sequence of the gene encoding the largest subunit of RNA polymerase I of Trypanosoma brucei. FEBS Lett 249: 123–128 (1989).

    Article  PubMed  Google Scholar 

  16. Jokerst RS, Weeks JR, Zehring WA, Greenleaf AL: Analysis of the gene encoding the largest subunit of RNA polymerase II in Drosophila. Mol Gen Genet 215: 266–275 (1989).

    PubMed  Google Scholar 

  17. Kaplan S, Arntzen CJ: Photosynthetic membrane structure and function. In: Govindjee (ed) Photosynthesis: Energy Conversion by Plants and Bacteria, vol. 1, pp. 65–151. Academic Press, New York (1982).

    Google Scholar 

  18. Laemmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680–685 (1970).

    PubMed  Google Scholar 

  19. Lowenadler B, Jansson B, Paleus S, Holmgren E, Nilsson B, Moks T, Palm G, Josephson S, Philipson L, Uhlen M. A gene fusion system for generating antibodies against short peptides. Gene 58: 87–97 (1987).

    Article  PubMed  Google Scholar 

  20. Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1982).

    Google Scholar 

  21. Morden CW, Wolfe KH, dePamphilis CW, Palmer JD: Plastid translation and transcription genes in a nonphotosynthetic plant: intact, missing, and pseudogenes. EMBO J 10: 3281–3288 (1991).

    PubMed  Google Scholar 

  22. Morrissey JH: Silver stain for proteins in polyacrylamide gels: a modified procedure with enhanced uniform sensitivity. Anal Biochem 117: 307–310 (1981).

    PubMed  Google Scholar 

  23. Murashige T, Skoog F: A revised medium for rapid growth and bioassays with tobacco tissue culture. Plant Physiol 15: 473–497 (1962).

    Google Scholar 

  24. Nilsson B, Abrahmsen L, Uhlen M: Immobilization and purification of enzymes with staphylococcal protein A gene fusion vectors. EMBO J 4: 1075–1080 (1985).

    PubMed  Google Scholar 

  25. Nimzyk R, Schoendorf T, Hachtel W: In-frame length mutations associated with short tandem repeats are located in unassigned open reading frames of Oenothera chloroplast DNA. Curr Genet, in press (1992).

  26. Ohyama K, Fukuzawa H, Kohchi T, Shirai H, Sano T, Umesono K, Shiki Y, Takeuchi M, Chang Z, Aota S, Inokuchi H, Ozeki H: Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322: 572–574 (1986).

    Google Scholar 

  27. Palmer JD: Plastid chromosomes: structure and evolution. In: Bogorad L, Vasil IK (eds) The Molecular Biology of Plastids, vol 7a: Cell Culture and Somatic Cell Genetics in Plants, pp. 5–53. Academic Press, New York (1991).

    Google Scholar 

  28. Richards CM, Himman SB, Boyer CD, Hardison RC: Survey of plastid RNA abundance during tomato fruit ripening: the amounts of RNA from the ORF2280 region increase in chromoplast. Plant Mol Biol 17: 1179–1188 (1991).

    PubMed  Google Scholar 

  29. Shimada H, Fukuta M, Ishikawa M, Sugiura M: Rice chloroplast RNA polymerase genes: the absence of an intron in rpoC1 and the presence of an extra sequence in rpoC2. Mol Gen Genet 221: 395–402 (1990).

    Article  PubMed  Google Scholar 

  30. Shimada H, Sugiura M: Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes. Nucl Acids Res 19: 983–995 (1991).

    PubMed  Google Scholar 

  31. Shinozaki K, Ohmer M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shinozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M: The complete nucleotide sequence of the tobacco chloroplast genome: its organization and expression. EMBO J 5: 2043–2049 (1986).

    Google Scholar 

  32. Sugiura M: The chloroplast chromosomes in land plants. Annu Rev Cell Biol 5: 51–70 (1989).

    PubMed  Google Scholar 

  33. Sugiura M, Shinozaki K, Zaita N, Kusuda M, Kumano M: Clone bank of the tobacco (Nicotiana tabacum) chloroplast genome as a set of overlapping restriction endonuclease fragments: mapping of eleven ribosomal protein genes. Plant Sci 44: 211–216 (1986).

    Article  Google Scholar 

  34. Sweetser D, Nonet M, Young RA: Prokaryotic and eukaryotic RNA polymerases have homologous core subunits. Proc Natl Acad Sci USA 84: 1192–1196 (1987).

    PubMed  Google Scholar 

  35. Towbin H, Staehelin T, Gordon J: Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets-procedure and some applications. Proc Natl Acad Sci USA 76: 4350–4354 (1979).

    PubMed  Google Scholar 

  36. Zhou DX, Massenet O, Quigley F, Marion MJ, Moneger F, Huber P, Mache R. Characterization of a large inversion in the spinach chloroplast genome relative to Marchantia: a possible transposon-mediated origin. Curr Genet 13: 433–439 (1989).

    Google Scholar 

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Glick, R.E., Sears, B.B. Large unidentified open reading frame in plastid DNA (ORF2280) is expressed in chloroplasts. Plant Mol Biol 21, 99–108 (1993). https://doi.org/10.1007/BF00039621

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  • DOI: https://doi.org/10.1007/BF00039621

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