Skip to main content
Log in

Right-border sequences enable the left border of an Agrobacterium tumefaciens nopaline Ti-plasmid to produce single-stranded DNA

  • Published:
Plant Molecular Biology Aims and scope Submit manuscript

Abstract

The T-region of nopaline-type Ti-plasmids (the portion of the plasmid that is transferred to plant cells) of Agrobacterium tumefaciens is delimited by 23–25 bp direct repeats. They are nicked by the products of the virD locus and the presence of these nicked sites is correlated with the synthesis of single-stranded T-region copies. Despite previous indications to the contrary, we show that the pTiT37 T-region left border is capable of producing single-stranded DNA with high efficiency and that its ability to do so is totally dependent on right border-proximal cis-acting sequences, most probably overdrive, located several kilobases from the border. The absence of overdrive does not affect the single-strand nicking activity of the virD product but only the production of single-stranded copies from the nicked substrate.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Albright LM, Yanofsky MF, Leroux B, Ma D, Nestes E: Processing of the T-DNA of Agrobacterium tumefaciens generates border nicks and linear, single-stranded T-DNA. J Bacteriol 169: 1046–1055 (1987).

    Google Scholar 

  2. Alt-Moerbe J, Rak B, Schroder J: A 3.6 kbp segment from the vir region of Ti-plasmids contains genes reponsible for border sequence-directed production of T-region circles in E. coli. EMBO J 5: 1129–1135 (1986).

    Google Scholar 

  3. Birnboim HC, Doly J: A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl Acids Res 7: 1513–523 (1979).

    Google Scholar 

  4. Bolton GW, Nester EW, Gordon MP: Plant phenolic compounds induce expression of the Agrobacterium tumefaciens loci needed for virulence. Science 232: 983–985 (1986).

    Google Scholar 

  5. Buchanan-Wollaston V, Passiatore JE, Cannon F: The mob and oriT mobilization functions of a bacterial plasmid promote its tranfer to plants. Nature 328: 172–175 (1987).

    Google Scholar 

  6. Caplan AB, Van Montagu M, Schell J: Genetic analysis of integration mediated by single T-DNA border. J Bacteriol 161: 655–664 (1985).

    Google Scholar 

  7. Depicker A, De Wilde M, De Vos R, van Montagu M, Schell J: Molecular cloning of overlapping segments of the nopaline Ti-plasmid pTiC58 as a means to restriction endonuclease mapping. Plasmid 3: 193–211 (1980).

    Google Scholar 

  8. Feinberg AP, Vogelstein B: A technique for radiolabelling DNA restriction endonuclease fragment to high specific activity. Anal Biochem 132: 6–13 (1983).

    Google Scholar 

  9. Garfinkel DJ, Nester EW: Agrobacterium tumefaciens mutants affected in crown gall tumorigenesis and octopine catabolism. J Bacteriol 144: 732–743 (1980).

    Google Scholar 

  10. Grinter NJ: A broad host-range cloning vector transposable to various replicons. Gene 21: 133–143 (1983).

    Google Scholar 

  11. Hepburn AG, White J: The effect of right terminal repeat deletion on the oncogenicity of the T-region of pTiT37. Plant Mol Biol 5: 3–11 (1985).

    Google Scholar 

  12. Hepburn AG, Clarke LE, Blundy KS, White J: Nopaline Tiplasmid, pTiT37, T-DNA insertions into a flax genome. J Mol Appl Genet 2: 211–224 (1983).

    Google Scholar 

  13. Hepburn AG, White J, Pearson L, Maunders MJ, Clarke LE, Prescott AG, Blundy KS: The use of pNJ5000 as an intermediate vector for the genetic manipulation of Agrobacterium Ti-plasmids. J Gen Microbiol 131: 2961–2969 (1985).

    Google Scholar 

  14. Hildebrand EM: Micrurgical study of crown gall infection in tomato. J Agric Sci 65: 45–59 (1942).

    Google Scholar 

  15. Janssens A, Genetello C, van Montagu M, Zambryski P: Plant cells induce transcription of the Agrobacterium tumefaciens nopaline pTiC58 virulence region. Plant Sci 47: 185–193 (1986).

    Google Scholar 

  16. Jayaswal RK, Veluthambi K, Gelvin SB, Slightom JL: Double-stranded cleavage of T-DNA and generation of single-stranded T-DNA molecules in Escherichia coli by a virD-encoded border-specific endonuclease from Agrobacterium tumefaciens. J Bacteriol 169: 5035–5045 (1987).

    Google Scholar 

  17. Jen GC, Chilton M-D: Activity of T-DNA borders in plant cell transformation by mini-T plasmids. J Bacteriol 166: 491–499 (1986).

    Google Scholar 

  18. Jen GC, Chilton M-D: The right border region of pTiT37 T-DNA is intrinsically more active than the left border region in promoting T-DNA transformation. Proc Natl Acad Sci USA 83: 3895–3899 (1986).

    Google Scholar 

  19. Joos M, Inze D, Caplan D, Sormann M, van Montagu M, Schell J: Genetic analysis of T-DNA transcripts in nopaline crown galls. Cell 32: 1057–1067 (1983).

    Google Scholar 

  20. Joos H, Timmerman B, van Montagu M, Schell J: Genetic analysis of transfer and stabilisation of Agrobacterium DNA in plant cells. EMBO J 2: 2151–2160 (1983).

    Google Scholar 

  21. Kieser T, Hopwood DA, Wright HM: Small multi-copy plasmids in Streptomyces and their potential as DNA cloning vectors. John Innes Annual Report 1980: 97–102 (1981).

    Google Scholar 

  22. Koukolikova-Nicola Z, Shillito RD, Hohn B, Wang K, van Montagu M, Zambryski P: Involvement of circular intermediates in the transfer of T-DNA from Agrobacterium tumefaciens to plant cells. Nature 313: 191–196 (1985).

    Google Scholar 

  23. Lemmers M, De Beuckeleer M, Holsters M, Zambryski P, Depicker A, Hernalsteens JP, van Montagu M, Schell J: Internal organization, boundaries and integration of Tiplasmid DNA in nopaline crown gall tumors. J Mol Biol 144: 353–376 (1980).

    Google Scholar 

  24. Lippincott JA, Heberlein GT: The quantitative determination of the infectivity of Agrobacterium tumefaciens. Am J Bot 52: 856–863 (1965).

    Google Scholar 

  25. Maniatis T, Jeffrey A, Klein DG: Nucleotide sequence of the rightward operator of phage lambda. Proc Natl Acad Sci USA 75: 1184–1188 (1975).

    Google Scholar 

  26. Murashige T, Skoog F: A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15: 473–497 (1962).

    Google Scholar 

  27. Peralta EG, Ream LW: T-DNA border sequences required for crown gall tumorigenesis. Proc. Natl Acad Sci USA 82: 5112–5116 (1985).

    Google Scholar 

  28. Peralta EG, Hellmiss R, Ream W: Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid. EMBO J 5: 1137–1142 (1986).

    Google Scholar 

  29. Rubin RA: Genetic studies on the role of octopine T-DNA border regions in crown gall tumor formation. Mol Gen Gener 202: 312–320.

  30. Shaw CH, Watson MD, Carter GH, Shaw CH: The right hand copy of the nopaline Ti-plasmid 25 bp repeat is required for tumor formation. Nucl Acids Res 12: 6031–6041 (1984).

    Google Scholar 

  31. Stachel SE, Zambryski PC: Agrobacterium tumefaciens and the susceptible plant cell: A novel adaptation of extracellular recognition and DNA conjugation. Cell 47: 155–157 (1986).

    Google Scholar 

  32. Stachel SE, Messens E, van Montagu M, Zambryski P: Identification of the signal molecules produced by wounded plant cells that activate T-DNA transfer in Agrobacterium tumefaciens. Nature 318: 624–629 (1985).

    Google Scholar 

  33. Stachel SE, Nester EW, Zambryski PC: A plant cell factor induces Agrobacterium tumefaciens vir gene expression. Proc Natl Acad Sci USA 83: 379–383 (1986).

    Google Scholar 

  34. Stachel SE, Timmerman B, Zambryski P: Generation of single-stranded T-DNA molecules during the initial stages of T-DNA transfer from Agrobacterium tumefaciens to plant cells. Nature 322: 706–712 (1986).

    Google Scholar 

  35. Stachel SE, Timmerman B, Zambryski P: Activation of Agrobacterium tumefaciens vir gene expression generates multiple single-stranded T-strand molecules from the pTiA6 T-region: requirement for 5′ virD gene products. EMBO J 6: 857–863 (1987).

    Google Scholar 

  36. Twigg AJ, Sherratt DJ: Trans-complementable copy-number mutants of plasmid ColE1. Nature 283: 216–218 (1980).

    Google Scholar 

  37. van Haaren MJJ, Pronk JT, Schilperoort RA, Hooykaas PJJ: Functional analysis of the Agrobacterium tumefaciens octopine Ti-plasmid left and right T-region border fragments. Plant Mol Biol 8: 95–104 (1987).

    Google Scholar 

  38. Veluthambi K, Jayaswal RK, Gelvin SB: Virulence genes A, G, and D mediate the double-stranded border cleavage of T-DNA from the Agrobacterium Ti-plasmid. Proc Natl Acad Sci USA 84: 1881–1885 (1987).

    Google Scholar 

  39. Wang K, Herrera-Estrella L, Van Montagu M, Zambryski P: Right 25 bp terminus sequence of the nopaline T-DNA is essential for and determines direction of DNA transfer from Agrobacterium to the plant genome. Cell 38: 455–462 (1985).

    Google Scholar 

  40. Wang K, Stachel SE, Timmerman B, van Montagu M, Zambryski PC: Site-specific nick in the T-DNA border sequences as a result of Agrobacterium vir gene expression. Science 235: 587–591 (1987).

    Google Scholar 

  41. Willetts N, Wilkins B: Processing of plasmid DNA during bacterial conjugation. Microbiol Rev 48: 24–41 (1984).

    Google Scholar 

  42. Yadav NS, Postle K, Saiki RK, Thomashow MF, Chilton M-D: T-DNA of a crown gall is covalently joined to host plant DNA. Nature 287: 458–461 (1980).

    Google Scholar 

  43. Yadav NS, Vanderleyden J, Bennett DR, Barnes WM, Chilton M-D: Short direct repeats flank the T-DNA of a nopaline Tiplasmid. Proc Natl Acad Sci USA 79: 6322–6326 (1982).

    Google Scholar 

  44. Yamamoto A, Iwahashi M, Yanofsky MF, Nester EW, Takebe I, Machida T: The promoter proximal region in the virD locus of Agrobacterium tumefaciens is necessary for the plantinducible circularization of T-DNA. Mol Gen Genet 206: 174–177 (1987).

    Google Scholar 

  45. Yanofsky MF, Porter SG, Young C, Albright LM, Gordon MP, Nester EW: The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease. Cell 47: 471–477 (1986).

    Google Scholar 

  46. Zambryski P, Depicker A, Kruger K, Goodman HM: Tumor induction by Agrobacterium tumefaciens: analysis of the boundaries of T-DNA. J Mol Appl Genet 1: 361–370 (1982).

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Culianez-Macia, F.A., Hepburn, A.G. Right-border sequences enable the left border of an Agrobacterium tumefaciens nopaline Ti-plasmid to produce single-stranded DNA. Plant Mol Biol 11, 389–399 (1988). https://doi.org/10.1007/BF00039019

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00039019

Key words

Navigation