Abstract
The T-region of nopaline-type Ti-plasmids (the portion of the plasmid that is transferred to plant cells) of Agrobacterium tumefaciens is delimited by 23–25 bp direct repeats. They are nicked by the products of the virD locus and the presence of these nicked sites is correlated with the synthesis of single-stranded T-region copies. Despite previous indications to the contrary, we show that the pTiT37 T-region left border is capable of producing single-stranded DNA with high efficiency and that its ability to do so is totally dependent on right border-proximal cis-acting sequences, most probably overdrive, located several kilobases from the border. The absence of overdrive does not affect the single-strand nicking activity of the virD product but only the production of single-stranded copies from the nicked substrate.
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Albright LM, Yanofsky MF, Leroux B, Ma D, Nestes E: Processing of the T-DNA of Agrobacterium tumefaciens generates border nicks and linear, single-stranded T-DNA. J Bacteriol 169: 1046–1055 (1987).
Alt-Moerbe J, Rak B, Schroder J: A 3.6 kbp segment from the vir region of Ti-plasmids contains genes reponsible for border sequence-directed production of T-region circles in E. coli. EMBO J 5: 1129–1135 (1986).
Birnboim HC, Doly J: A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucl Acids Res 7: 1513–523 (1979).
Bolton GW, Nester EW, Gordon MP: Plant phenolic compounds induce expression of the Agrobacterium tumefaciens loci needed for virulence. Science 232: 983–985 (1986).
Buchanan-Wollaston V, Passiatore JE, Cannon F: The mob and oriT mobilization functions of a bacterial plasmid promote its tranfer to plants. Nature 328: 172–175 (1987).
Caplan AB, Van Montagu M, Schell J: Genetic analysis of integration mediated by single T-DNA border. J Bacteriol 161: 655–664 (1985).
Depicker A, De Wilde M, De Vos R, van Montagu M, Schell J: Molecular cloning of overlapping segments of the nopaline Ti-plasmid pTiC58 as a means to restriction endonuclease mapping. Plasmid 3: 193–211 (1980).
Feinberg AP, Vogelstein B: A technique for radiolabelling DNA restriction endonuclease fragment to high specific activity. Anal Biochem 132: 6–13 (1983).
Garfinkel DJ, Nester EW: Agrobacterium tumefaciens mutants affected in crown gall tumorigenesis and octopine catabolism. J Bacteriol 144: 732–743 (1980).
Grinter NJ: A broad host-range cloning vector transposable to various replicons. Gene 21: 133–143 (1983).
Hepburn AG, White J: The effect of right terminal repeat deletion on the oncogenicity of the T-region of pTiT37. Plant Mol Biol 5: 3–11 (1985).
Hepburn AG, Clarke LE, Blundy KS, White J: Nopaline Tiplasmid, pTiT37, T-DNA insertions into a flax genome. J Mol Appl Genet 2: 211–224 (1983).
Hepburn AG, White J, Pearson L, Maunders MJ, Clarke LE, Prescott AG, Blundy KS: The use of pNJ5000 as an intermediate vector for the genetic manipulation of Agrobacterium Ti-plasmids. J Gen Microbiol 131: 2961–2969 (1985).
Hildebrand EM: Micrurgical study of crown gall infection in tomato. J Agric Sci 65: 45–59 (1942).
Janssens A, Genetello C, van Montagu M, Zambryski P: Plant cells induce transcription of the Agrobacterium tumefaciens nopaline pTiC58 virulence region. Plant Sci 47: 185–193 (1986).
Jayaswal RK, Veluthambi K, Gelvin SB, Slightom JL: Double-stranded cleavage of T-DNA and generation of single-stranded T-DNA molecules in Escherichia coli by a virD-encoded border-specific endonuclease from Agrobacterium tumefaciens. J Bacteriol 169: 5035–5045 (1987).
Jen GC, Chilton M-D: Activity of T-DNA borders in plant cell transformation by mini-T plasmids. J Bacteriol 166: 491–499 (1986).
Jen GC, Chilton M-D: The right border region of pTiT37 T-DNA is intrinsically more active than the left border region in promoting T-DNA transformation. Proc Natl Acad Sci USA 83: 3895–3899 (1986).
Joos M, Inze D, Caplan D, Sormann M, van Montagu M, Schell J: Genetic analysis of T-DNA transcripts in nopaline crown galls. Cell 32: 1057–1067 (1983).
Joos H, Timmerman B, van Montagu M, Schell J: Genetic analysis of transfer and stabilisation of Agrobacterium DNA in plant cells. EMBO J 2: 2151–2160 (1983).
Kieser T, Hopwood DA, Wright HM: Small multi-copy plasmids in Streptomyces and their potential as DNA cloning vectors. John Innes Annual Report 1980: 97–102 (1981).
Koukolikova-Nicola Z, Shillito RD, Hohn B, Wang K, van Montagu M, Zambryski P: Involvement of circular intermediates in the transfer of T-DNA from Agrobacterium tumefaciens to plant cells. Nature 313: 191–196 (1985).
Lemmers M, De Beuckeleer M, Holsters M, Zambryski P, Depicker A, Hernalsteens JP, van Montagu M, Schell J: Internal organization, boundaries and integration of Tiplasmid DNA in nopaline crown gall tumors. J Mol Biol 144: 353–376 (1980).
Lippincott JA, Heberlein GT: The quantitative determination of the infectivity of Agrobacterium tumefaciens. Am J Bot 52: 856–863 (1965).
Maniatis T, Jeffrey A, Klein DG: Nucleotide sequence of the rightward operator of phage lambda. Proc Natl Acad Sci USA 75: 1184–1188 (1975).
Murashige T, Skoog F: A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15: 473–497 (1962).
Peralta EG, Ream LW: T-DNA border sequences required for crown gall tumorigenesis. Proc. Natl Acad Sci USA 82: 5112–5116 (1985).
Peralta EG, Hellmiss R, Ream W: Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid. EMBO J 5: 1137–1142 (1986).
Rubin RA: Genetic studies on the role of octopine T-DNA border regions in crown gall tumor formation. Mol Gen Gener 202: 312–320.
Shaw CH, Watson MD, Carter GH, Shaw CH: The right hand copy of the nopaline Ti-plasmid 25 bp repeat is required for tumor formation. Nucl Acids Res 12: 6031–6041 (1984).
Stachel SE, Zambryski PC: Agrobacterium tumefaciens and the susceptible plant cell: A novel adaptation of extracellular recognition and DNA conjugation. Cell 47: 155–157 (1986).
Stachel SE, Messens E, van Montagu M, Zambryski P: Identification of the signal molecules produced by wounded plant cells that activate T-DNA transfer in Agrobacterium tumefaciens. Nature 318: 624–629 (1985).
Stachel SE, Nester EW, Zambryski PC: A plant cell factor induces Agrobacterium tumefaciens vir gene expression. Proc Natl Acad Sci USA 83: 379–383 (1986).
Stachel SE, Timmerman B, Zambryski P: Generation of single-stranded T-DNA molecules during the initial stages of T-DNA transfer from Agrobacterium tumefaciens to plant cells. Nature 322: 706–712 (1986).
Stachel SE, Timmerman B, Zambryski P: Activation of Agrobacterium tumefaciens vir gene expression generates multiple single-stranded T-strand molecules from the pTiA6 T-region: requirement for 5′ virD gene products. EMBO J 6: 857–863 (1987).
Twigg AJ, Sherratt DJ: Trans-complementable copy-number mutants of plasmid ColE1. Nature 283: 216–218 (1980).
van Haaren MJJ, Pronk JT, Schilperoort RA, Hooykaas PJJ: Functional analysis of the Agrobacterium tumefaciens octopine Ti-plasmid left and right T-region border fragments. Plant Mol Biol 8: 95–104 (1987).
Veluthambi K, Jayaswal RK, Gelvin SB: Virulence genes A, G, and D mediate the double-stranded border cleavage of T-DNA from the Agrobacterium Ti-plasmid. Proc Natl Acad Sci USA 84: 1881–1885 (1987).
Wang K, Herrera-Estrella L, Van Montagu M, Zambryski P: Right 25 bp terminus sequence of the nopaline T-DNA is essential for and determines direction of DNA transfer from Agrobacterium to the plant genome. Cell 38: 455–462 (1985).
Wang K, Stachel SE, Timmerman B, van Montagu M, Zambryski PC: Site-specific nick in the T-DNA border sequences as a result of Agrobacterium vir gene expression. Science 235: 587–591 (1987).
Willetts N, Wilkins B: Processing of plasmid DNA during bacterial conjugation. Microbiol Rev 48: 24–41 (1984).
Yadav NS, Postle K, Saiki RK, Thomashow MF, Chilton M-D: T-DNA of a crown gall is covalently joined to host plant DNA. Nature 287: 458–461 (1980).
Yadav NS, Vanderleyden J, Bennett DR, Barnes WM, Chilton M-D: Short direct repeats flank the T-DNA of a nopaline Tiplasmid. Proc Natl Acad Sci USA 79: 6322–6326 (1982).
Yamamoto A, Iwahashi M, Yanofsky MF, Nester EW, Takebe I, Machida T: The promoter proximal region in the virD locus of Agrobacterium tumefaciens is necessary for the plantinducible circularization of T-DNA. Mol Gen Genet 206: 174–177 (1987).
Yanofsky MF, Porter SG, Young C, Albright LM, Gordon MP, Nester EW: The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease. Cell 47: 471–477 (1986).
Zambryski P, Depicker A, Kruger K, Goodman HM: Tumor induction by Agrobacterium tumefaciens: analysis of the boundaries of T-DNA. J Mol Appl Genet 1: 361–370 (1982).
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Culianez-Macia, F.A., Hepburn, A.G. Right-border sequences enable the left border of an Agrobacterium tumefaciens nopaline Ti-plasmid to produce single-stranded DNA. Plant Mol Biol 11, 389–399 (1988). https://doi.org/10.1007/BF00039019
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DOI: https://doi.org/10.1007/BF00039019