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Nicotiana chloroplast genome: X. Correlation between the DNA sequences and the isoelectric focusing patterns of the LS of Rubisco

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Summary

Comparison of the DNA sequences of the rbcL gene from three Nicotiana species reveals a high degree of homology among the 1431 bp in the coding region. Only eight base pair differences are observed between N. otophora and N. tabacum, and between N. otophora and N. acuminata. Four base pair differences are observed between N. acuminata and N. tabacum. Most changes are in the third position of the codon resulting in only two amino acid alterations when N. otophora and N. acuminata are compared with N. tabacum. Evidence is presented demonstrating that the amino acid compositions of the LS derived from the DNA sequence are related to the IEF cluster pattern. A single charged residue is responsible for the difference in cluster pattern.

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References

  1. Akada S, Mongkolsuk S, Lovett PS, Kung SD: Nicotiana chloroplast genome XI: In vivo analysis of the structure and function of terminators (manuscript).

  2. Amiri I, Salnikow J, Vater J: Amino acid sequence of the large subunit of D-ribulose bisphosphate carboxylase/oxygenase from Nicotiana tabacum. Biochim Biophys Acta 784:116–123, 1984.

    Google Scholar 

  3. Bovenberg WA, Koes RE, Kool AJ, Nijkamp HJJ: Physical mapping, nucleotide sequencing and expression in E. coli mini cells of the gene for the large subunit of ribulose biphosphate carboxylase from Petunia hybrida. Curr Genet 8:231–241, 1984.

    Google Scholar 

  4. Chen K, Wildman SG: Differentiation of fraction I protein in relation to age and distribution of angiosperm groups. Plant Syst Evol 138:89–113, 1981.

    Google Scholar 

  5. Coruzzi G, Broglie R, Cashmore AR, Chua NH: Nucleotide sequences of two pea cDNA clones encoding the small subunit of ribulose 1,5-bisphosphate carboxylase and the major chlorophyll a/b-binding thylakoid polypeptide. J Biol Chem 258:1399–1402, 1983.

    Google Scholar 

  6. Crossland LD, Rodermel SR, Bogorad L: Single gene for the large subunit of ribulosebisphosphate carboxylase in maize yields two differentially regulated mRNA. Proc Natl Acad Sci USA 81:4060–4064, 1984.

    Google Scholar 

  7. Gray JC, Kung SD, Wildman SG: Polypeptide chains of the large and small subunits of fraction I protein from tobacco. Arch Biochem Biophys 185:272–281, 1978.

    Google Scholar 

  8. Hawley DK, McClure WR: Compilation and analysis of Escherichia coli promoter DNA sequences. Nucleic Acids Res 11:2237–2255, 1983.

    Google Scholar 

  9. Howe CJ, Fearnley IM, Walker JE, Dyer TA, Gray JC: Nucleotide sequences of the genes for the alpha, beta and epsilon subunits of wheat chloroplast ATP synthase. Plant Mol Biol 4:333–345, 1985.

    Google Scholar 

  10. Kong SF, Gray JC, Kung SD: Nicotiana chloroplast genome XII: In vivo analysis of the structure and function of promoters (manuscript).

  11. Kung SD, Lin CM: Surveys and summaries chloroplast promoters from higher plants. Nucleic Acids Res: in press.

  12. Kung SD: Genetic analysis of tobacco RuBPCASE. CRC Critical Rev in Plant Sci 1:227–267, 1984.

    Google Scholar 

  13. Kung SD: Tobacco fraction I protein: a unique genetic marker. Science 191:429–434, 1976.

    Google Scholar 

  14. Kung SD, Lee CI: Evolutionary conservation of chloroplast genes coding for the large subunits of fraction I protein. Plant Physiol 60:89–94, 1977.

    Google Scholar 

  15. Kung SD, Sakano K, Wildman SG: Multiple peptide composition of the large and small subunits of Nicotiana tabacum fraction I protein ascertained by fingerprinting and electrofocusing. Biochim Biophys Acta 365:138–147, 1974.

    Google Scholar 

  16. Lin CM, Kung SD: Nicotiana chloroplast genome 8: localization of genes for subunits of ATP synthase, the cytochrome b-f complex and the 32 kd protein. Theor Appl Genet 68:213–218, 1984.

    Google Scholar 

  17. Link G: DNA sequence requirements for the accurate transcription of a protein-coding plastid gene in a plastid in vitro system from mustard (Sinapis alba L.) EMBO J 3:1697–1704, 1984.

    Google Scholar 

  18. McIntosh L, Poulsen C, Bogorad L: Chloroplast gene sequence for the large subunit of ribulose bisphosphate carboxylase of maize. Nature 288:556–560, 1980.

    Google Scholar 

  19. Maniatis T, Fritsch EF, Sambrook J (eds): Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, 1982, pp 164–165.

  20. Motto AK, Hoffman-Falk H, Marder JB, Edelman M: Regulation of protein metabolism: coupling of photosynthetic electron transport to in vivo degradation of the rapidly metabolized 32-kilodalton protein of the chloroplast membranes. Proc Natl Acad Sci USA 81:1380–1384, 1984.

    Google Scholar 

  21. Orozco EMJr, Mullet JE, Chua NH: An in vitro system for accurate transcription initiation of chloroplast protein genes. Nucleic Acids Res 13:1283–1303, 1985.

    Google Scholar 

  22. Prentki P, Karch F, Iida S, Meyer J: The plasmid cloning vector pBR325 contains a 482 base-pair-long inverted duplication. Gene 14:289–299, 1981.

    Google Scholar 

  23. Rhodes PR, Kung SD: Chloroplast deoxyribonucleic acid isolation: purity achieved without nuclease digestion. Can J of Biochem 59:911–915, 1981.

    Google Scholar 

  24. Rhodes PR, Kung SD, Marsho TV: Relationship of ribulose 1,5-bisphosphate carboxylase-oxygenase specific activity to subunit composition. Plant Physiol 65:69–73, 1980.

    Google Scholar 

  25. Sanger F, Nicklen S, Coulson AR: DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463–5467, 1977.

    Google Scholar 

  26. Shinozaki K, Sugiura M: The nucleotide sequence of the tobacco chloroplast gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase. Gene 20:91–102, 1982.

    Google Scholar 

  27. Shinozaki K, Sun CR, Sugiura M: Gene organization of chloroplast DNA from the broad bean Vicia faba. Mol Gen Genet 197:363–367, 1984.

    Google Scholar 

  28. Sugita M, Sugiura M: Nucleotide sequence and transcription of the gene for the 32 000 dalton thylakoid membrane protein from Nicotiana tabacum. Mol Gen Genet 195:308–313, 1984.

    Google Scholar 

  29. Whitfeld P, Bottomley W: Organization and structure of chloroplast genes. Ann Rev Plant Physiol 34:279–310, 1983.

    Google Scholar 

  30. Yanisch-Perron C, Vieira J, Messing J: Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103–119, 1985.

    Google Scholar 

  31. Zurawski G, Perrot B, Bottomley W, Whitfeld PR: The structure of the gene for the large subunit of ribulose 1,5-bisphosphate carboxylase from spinach chloroplast DNA. Nucleic Acid Res 9:3251–3270, 1981.

    Google Scholar 

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Lin, C.M., Liu, Z.Q. & Kung, S.D. Nicotiana chloroplast genome: X. Correlation between the DNA sequences and the isoelectric focusing patterns of the LS of Rubisco. Plant Mol Biol 6, 81–87 (1986). https://doi.org/10.1007/BF00027301

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  • DOI: https://doi.org/10.1007/BF00027301

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