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Wetlands

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Rising Tides: Assessing Habitat Vulnerability for an Endangered Salt Marsh-Dependent Species with Sea-Level Rise

  • Jordan A. Rosencranz
  • Karen M. Thorne
  • Kevin J. Buffington
  • Cory T. Overton
  • John Y. Takekawa
  • Michael L. Casazza
  • Jennifer McBroom
  • Julian K. Wood
  • Nadav Nur
  • Richard L. Zembal
  • Glen M. MacDonald
  • Richard F. Ambrose
Wetlands and Climate Change

Abstract

Salt marsh-dependent species are vulnerable to impacts of sea-level rise (SLR). Site-specific differences in ecogeomorphic processes result in different SLR vulnerabilities. SLR impacts to Ridgway’s rail (Rallus obsoletus) of Southern California (SC) and San Francisco Bay (SF), U.S.A. could foreshadow SLR effects on other coastal endemic species. Salt marsh vulnerabilities to SLR were forecasted across 14 study sites using the Wetland Accretion Rate Model of Ecosystem Resilience, which accounts for changes in above and belowground marsh processes. Changes in suitable habitat for rail were projected with MaxEnt. Under a high (166 cm/100 yr) SLR scenario, current extent of suitable habitat is projected to increase by 34% across the combined area of 14 sites by 2050, but by 2100, total habitat suitability is projected to decrease by 83%, with six salt marshes losing over 95% of suitable habitat. Under a high SLR scenario, SF’s suitable habitat is predicted to increase by 35% at mid-century, and SC’s current suitable habitat extent will increase by 24%. However, by 2100, SF is forecasted to lose 84% of suitable habitat and SC to lose 80% of its current habitat extent. If accretion rates cannot keep pace with SLR, salt marsh obligate species are in danger of being extirpated from their habitat.

Keywords

California Dynamic process model Habitat suitability Salt marsh specialist Sea level rise scenarios Species distribution model 

Notes

Acknowledgments

The authors would like to thank all of the technicians, graduate students, and volunteers who assisted with bird and salt marsh habitat surveys. We would also like to thank C. Wisley for sharing his species distribution modeling expertise with us. The project described in this publication was supported by the Southwest Climate Science Centers (SWCSC) and National Climate Change and Wildlife Science Center of the US Department of the Interior, and the USGS Western Ecological Research Center. Any use of trade, product, or firm names in this publication is for descriptive purposes only and does not imply endorsement by the US Government. All co-authors have seen and agree with the contents of the manuscript, and there is no conflict of interest to report.

References

  1. Ackerman JT, Overton CT, Casazza ML, Takekawa JY, Eagles-Smith CA, Keister RA, Herzog MP (2012) Does mercury contamination reduce body condition of endangered California clapper rails? Environmental Pollution 162:439–448CrossRefPubMedGoogle Scholar
  2. Ahmed N, Diana JS (2015) Threatening “white gold”: impacts of climate change on shrimp farming in coastal Bangladesh. Ocean and Coastal Management 114:42–52CrossRefGoogle Scholar
  3. Albertson J (1995) Ecology of the California clapper rail in South San Francisco Bay. Conservation biology. In: San Francisco State University. CA, San FranciscoGoogle Scholar
  4. Albertson J, Evens J (2000) California Clapper Rail. Pages 332–341 in Olofson P, and San Francisco Bay Area Wetlands Ecosystem Goals Project, editors. Baylands Ecosystem Species and Community Profiles: Life Histories and Environmental Requirements of Key Plants, Fish and Wildlife. San Francisco Estuary Project c/o SF Bay Regional Water Quality Control Board, San Francisco Bay Regional Water Quality Control Board. Oakland, CAGoogle Scholar
  5. Alongi DM (2008) Mangrove forests: resilience, protection from tsunamis, and responses to global climate change. Estuarine, Coastal and Shelf Science 76:1–13CrossRefGoogle Scholar
  6. Barbier EB, Hacker SD, Kennedy C, Koch EW, Stier AC, Silliman BR (2011) The value of estuarine and coastal ecosystem services. Ecological Monographs 81:169–193CrossRefGoogle Scholar
  7. Brown JL (2014) SDMtoolbox: a python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses. Methods in Ecology and Evolution 5:694–700CrossRefGoogle Scholar
  8. Brownlie W, Taylor B (1981) Coastal sediment delivery by Major Rivers in Southern California. Pasadena, CaliforniaGoogle Scholar
  9. Buffington K, Dugger B, Thorne K, Takekawa J (2016) Statistical correction of lidar-derived digital elevation models with mulitpectral airborne imagery in tidal marshes. Remote Sensing of Environment 186:616–625CrossRefGoogle Scholar
  10. Bui TD, Takekawa JY, Overton CT, Schultz ER, Hull JM, Casazza ML (2015) Movements of radio-marked California Ridgway's rails during monitoring surveys: implications for population monitoring. Journal of Fish and Wildlife Management 6(237):227–237.  https://doi.org/10.3996/092014-JFWM-069 CrossRefGoogle Scholar
  11. Cahoon DR, Lynch JC, Powell AN (1996) Marsh vertical accretion in a Southern California estuary, U.S.A. Estuarine, Coastal and Shelf Science 43:19–32CrossRefGoogle Scholar
  12. Callaway J, Borgnis E, Turner RE, Milan C (2012) Carbon sequestration and sediment accretion in San Francisco Bay tidal wetlands. Estuaries and Coasts 35:1163–1181CrossRefGoogle Scholar
  13. Callaway J, Zedler J (2004) Restoration of urban salt marshes: lessons from southern California. Urban Ecosystems 7:107–124CrossRefGoogle Scholar
  14. Callaway JC, Nyman JA, DeLaune RD (1996) Sediment accretion in coastal wetlands: a review and a simulation model of processes. Current topics in wetland biogeochemistry 2:2–23Google Scholar
  15. Casazza ML et al (2016) Endangered species management and ecosystem restoration: finding the common ground. Ecology and Society 21:19CrossRefGoogle Scholar
  16. Chesser R et al (2014) Fifty-fifth supplement to the American Ornithologists' Union check-list of north American birds. In: The Auk 131:CSi-CSxvGoogle Scholar
  17. Cloern JE et al (2015) Human activities and climate variability drive fast-paced change across the World's estuarine-coastal ecosystems. Global Change Biology 22:513–529CrossRefPubMedGoogle Scholar
  18. Costanza R, d'Arge R, de Groot R, Farber S, Grasso M, Hannon B, Limburg K, Naeem S, O'Neill RV, Paruelo J, Raskin RG, Sutton P, van den Belt M (1997) The value of the world's ecosystem services and natural capital. Nature 387:253–260CrossRefGoogle Scholar
  19. Costanza R, Pérez-Maqueo O, Martinez ML, Sutton P, Anderson SJ, Mulder K (2008) The value of coastal wetlands for hurricane protection. Ambio: A Journal of the Human Environment 37:241–248CrossRefGoogle Scholar
  20. Day JW, Kemp GP, Reed DJ, Cahoon DR, Boumans RM, Suhayda JM, Gambrell R (2011) Vegetation death and rapid loss of surface elevation in two contrasting Mississippi delta salt marshes: the role of sedimentation, autocompaction and sea-level rise. Ecological Engineering 37:229–240CrossRefGoogle Scholar
  21. Day JW, Rismondo A, Scarton F, Are D, Cecconi G (1998) Relative Sea level rise and Venice lagoon wetlands. Journal of Coastal Conservation 4:27–34CrossRefGoogle Scholar
  22. De Groot DS (1927) The California clapper rail its nesting habits, enemies and habitat. Condor 29:259–270CrossRefGoogle Scholar
  23. Duan RY, Kong XQ, Huang MY, Fan WY, Wang ZG (2014) The predictive performance and stability of six species distribution models. PLoS One 9:8Google Scholar
  24. Elith J, Phillips SJ, Hastie T, Dudík M, Chee YE, Yates CJ (2011) Appendices - a statistical explanation of MaxEnt for ecologists. Diversity and Distributions 17:43–57CrossRefGoogle Scholar
  25. Fagherazzi S, Mariotti G, Wiberg PL, McGlathery KJ (2013) Marsh collapse does not require sea level rise. Oceanography 26:70–77CrossRefGoogle Scholar
  26. Fourcade Y, Engler JO, Rödder D, Secondi J (2014) Mapping species distributions with MAXENT using a geographically biased sample of presence data: a performance assessment of methods for correcting sampling Bias. PLoS One 9:e97122CrossRefPubMedPubMedCentralGoogle Scholar
  27. Ganju NK, Schoellhamer DH (2010) Decadal-timescale estuarine geomorphic change under future scenarios of climate and sediment supply. Estuaries and Coasts 33:15–29CrossRefGoogle Scholar
  28. Greenberg R, Maldonado JE, Droege S, McDonald MV (2006) Tidal marshes: a global perspective on the evolution and conservation of their terrestrial vertebrates. Bioscience 56:675–685CrossRefGoogle Scholar
  29. Grossinger R, Stein E, Cayce K, Askevold R, Dark S, Whipple A (2011) Historical wetlands of the southern California coast: an atlas of US coast survey t-sheets, 1851–1889. Oakland, CaliforniaGoogle Scholar
  30. Joughin I, Smith BE, Medley B (2014) Marine ice sheet collapse potentially under way for the Thwaites Glacier Basin, West Antarctica. Science 344:735–738CrossRefPubMedGoogle Scholar
  31. Kirwan ML, Guntenspergen GR, D'Alpaos A, Morris JT, Mudd SM, Temmerman S (2010) Limits on the adaptability of coastal marshes to rising sea level. Geophysical Research Letters 37:L23401CrossRefGoogle Scholar
  32. Lawson CR, Hodgson JA, Wilson RJ, Richards SA (2014) Prevalence, thresholds and the performance of presence–absence models. Methods in Ecology and Evolution 5:54–64CrossRefGoogle Scholar
  33. Liu CR, Berry PM, Dawson TP, Pearson RG (2005) Selecting thresholds of occurrence in the prediction of species distributions. Ecography 28:385–393CrossRefGoogle Scholar
  34. Liu L, Wood J, Nur N, Salas L, Jongsomjit D (2012) California Clapper Rail (Rallus longirostris obsoletus) Population monitoring: 2005–2011. PRBO Technical Report to the California Department of Fish and Game., Petaluma CaliforniaGoogle Scholar
  35. Lobo JM, Jimenez-Valverde A, Real R (2008) AUC: a misleading measure of the performance of predictive distribution models. Global Ecology and Biogeography 17:145–151CrossRefGoogle Scholar
  36. Maley JM, Brumfield RT (2013) Mitochondrial and next-generation sequence data used to infer phylogenetic relationships and species limits in the clapper/king rail complex. Condor 115:316–329CrossRefGoogle Scholar
  37. Massey BW, Zembal R, Jorgensen PD (1984) Nesting habitat of the light-footed clapper rail in Southern California. Journal of Field Ornithology 55:67–80Google Scholar
  38. McBroom J (2012) California clapper rail surveys for the San Francisco estuary invasive Spartina project 2012. Olofson Environmental Inc., BerkeleyGoogle Scholar
  39. McFarland KP, Rimmer CC, Goetz JE, Aubry Y, Wunderle JM, Sutton A, Townsend JM, Sosa AL, Kirkconnell A (2013) A winter distribution model for Bicknell's thrush (Catharus bicknelli), a conservation tool for a threatened migratory songbird. PLoS One 8:9Google Scholar
  40. Merow C, Smith MJ, Silander JA (2013) A practical guide to MaxEnt for modeling species’ distributions: what it does, and why inputs and settings matter. Ecography 36:1058–1069CrossRefGoogle Scholar
  41. Morris JT, Sundareshwar PV, Nietch CT, Kjerfve B, Cahoon DR (2002) Responses of coastal wetlands to rising sea level. Ecology 83:2869–2877CrossRefGoogle Scholar
  42. Mudie PJ, Byrne R (1980) Pollen evidence for historic sedimentation rates in California coastal marshes. Estuarine and Coastal Marine Science 10:305–316CrossRefGoogle Scholar
  43. National Resource Council (2012) Sea-level rise for the coasts of California, Oregon, and Washington: past, present, and future. The National Academies Press, Washington D.CGoogle Scholar
  44. Onuf CP (1987) The ecology of Mugu lagoon, California: an estuarine profile. Washington D.C.Google Scholar
  45. Overton C, Casazza M, Takekawa J, Strong D, Holyoak M (2014) Tidal and seasonal effects on survival rates of the endangered California clapper rail: does invasive Spartina facilitate greater survival in a dynamic environment? Biological Invasions 16:1897–1914CrossRefGoogle Scholar
  46. Phillips SJ, Dudík M (2008) Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation. Ecography 31:161–175CrossRefGoogle Scholar
  47. Phillips SJ, Elith J (2013) On estimating probability of presence from use-availability or presence-background data. Ecology 94:1409–1419CrossRefPubMedGoogle Scholar
  48. Redfield AC (1972) Development of a New England salt marsh. Ecological Monographs 42:201–237CrossRefGoogle Scholar
  49. Reed DJ, Spencer T, Murray AL, French JR, Leonard L (1999) Marsh surface sediment deposition and the role of tidal creeks: implications for created and managed coastal marshes. Journal of Coastal Conservation 5:81–90CrossRefGoogle Scholar
  50. Riegl B, Purkis S (2015) Coral population dynamics across consecutive mass mortality events. Global Change Biology 21:3995–4005CrossRefPubMedGoogle Scholar
  51. Rohmer T (2010) Tracking the California clapper rail: a home range study in anticipation of imminent habitat change. Page 57. Wildlife conservation. University of California, DavisGoogle Scholar
  52. Rosencranz J, Ganju N, Ambrose R, Brosnahan S, Dickhudt P, Guntenspergen G, MacDonald G, Takekawa J, Thorne K (2016) Balanced sediment fluxes in Southern California’s Mediterranean-climate zone salt marshes. Estuaries and Coasts 39:1035–1049CrossRefGoogle Scholar
  53. Schwarzbach SE, Albertson JD, Thomas CM (2006) Effects of predation, flooding, and contamination on reproductive success of California clapper rails (Rallus longirostris obsoletus) in San Francisco Bay. Auk 123:45–60CrossRefGoogle Scholar
  54. Schile LM, Callaway JC, Morris JT, Stralberg D, Parker VT, Kelly M (2014) Modeling tidal marsh distribution with sea-level rise: evaluating the role of vegetation, sediment, and upland habitat in marsh resiliency. PLoS One 9:e88760CrossRefPubMedPubMedCentralGoogle Scholar
  55. Shellhammer HS (1989) Salt marsh harvest mice, urban development, and rising sea levels. Conservation Biology 3:59–65CrossRefGoogle Scholar
  56. Shirzaei M, Burgmann R (2018) Global climate change and local land subsidence exacerbate inundation risk to the San Francisco Bay Area. Science Advances 4:eaap9234CrossRefPubMedPubMedCentralGoogle Scholar
  57. Stralberg D, Brennan M, Callaway JC, Wood JK, Schile LM, Jongsomjit D, Kelly M, Parker VT, Crooks S (2011) Evaluating tidal marsh sustainability in the face of sea-level rise: a hybrid modeling approach applied to San Francisco Bay. PLoS One 6:e27388CrossRefPubMedPubMedCentralGoogle Scholar
  58. Swanson K, Drexler J, Schoellhamer D, Thorne K, Casazza M, Overton C, Callaway J, Takekawa J (2013) Wetland accretion rate model of ecosystem resilience (WARMER) and its application to habitat sustainability for endangered species in the San Francisco estuary. Estuaries and Coasts 37:476–492CrossRefGoogle Scholar
  59. Swanson KM, Drexler JZ, Fuller CC, Schoellhamer DH (2015) Modeling tidal freshwater marsh sustainability in the Sacramento–san Joaquin Delta under a broad suite of potential future scenarios. San Francisco Estuary and Watershed Science 13:1–21CrossRefGoogle Scholar
  60. Takekawa J, Woo I, Spautz H, Nur N, Grenier J, Malamud-Roam K, Nordby J, Cohen A, Malamud-Roam F, De La Cruz S (2006) Environmental threats to tidal-marsh vertebrates of the San Francisco Bay estuary. Studies in Avian Biology 32:176Google Scholar
  61. Takekawa JY, Thorne KM, Buffington KJ, Freeman CM, Block G (2014) Evaluation of subterranean subsidence at Seal Beach National Wildlife Refuge. Vallejo, CAGoogle Scholar
  62. Takekawa JY, Thorne KM, Buffington KJ, Spragens KA, Swanson KM, Drexler JZ, Schoellhamer DH, Overton CT, Casazza ML (2013) U.S. Geological Survey Open-File Report: Final report for sea-level rise response modeling for San Francisco Bay estuary tidal marshesGoogle Scholar
  63. Takekawa JY, Woo I, Gardiner R, Casazza M, Ackerman JT, Nur N, Liu L, Spautz H (2011) Avian communities in tidal salt marshes of San Francisco Bay: a review of functional groups by foraging guild and habitat association. San Francisco Estuary and Watershed Science 9:1–24CrossRefGoogle Scholar
  64. Thorne K, MacDonald G, Ambrose R, Buffington K, Freeman C, Janousek C, Brown L, Holmquist J, Guntenspergen G, Powelson K, Barnard P, Takekawa J (2016) U.S. Geological Survey Open-File Report: Effects of Climate change on tidal marshes along a latitudinal gradient in CaliforniaGoogle Scholar
  65. Thorne K, MacDonald G, Guntenspergen G, Ambrose R, Buffington K, Dugger B, Freeman C, Janousek C, Brown L, Rosencranz J, Holmquist J, Smol J, Hargan K, Takekawa J (2018) U.S. Pacific coastal wetland resilience and vulnerability to sea-level rise. Science Advances 4:eaao3270.  https://doi.org/10.1126/sciadv.aao3270 CrossRefPubMedPubMedCentralGoogle Scholar
  66. Van Dyke E, Wasson K (2005) Historical ecology of a Central California estuary: 150 years of habitat change. Estuaries 28:173–189CrossRefGoogle Scholar
  67. Veloz S, Nur N, Salas L, Stralberg D, Jongsomjit D, Wood J, Liu L, Ballard G (2011) Tidal marsh bird population and habitat assessment for the San Francisco Estuary under future climate change conditions. Version 1.0. Report to the California Landscape Conservation Cooperative. http://data.prbo.org/apps/sfbslr/PRBOLCCSFBaySLRFinalReport.pdf. Accessed 19 April 2018
  68. Veloz SD, Nur N, Salas L, Jongsomjit D, Wood J, Stralberg D, Ballard G (2013) Modeling climate change impacts on tidal marsh birds: restoration and conservation planning in the face of uncertainty. Ecosphere 4:1–25.  https://doi.org/10.1890/ES12-00341.1 CrossRefGoogle Scholar
  69. Villero D, Pla M, Camps D, Ruiz-Olmo J, Brotons L (2017) Integrating species distribution modelling into decision-making to inform conservation actions. Biodiversity and Conservation 26:251–271CrossRefGoogle Scholar
  70. Vogl RJ (1966) Salt-marsh vegetation of upper Newport Bay, California. Ecology 47:80–87CrossRefGoogle Scholar
  71. Wakie TT, Evangelista PH, Jarnevich CS, Laituri M (2014) Mapping current and potential distribution of non-native Prosopis juliflora in the Afar region of Ethiopia. PLoS One 9:9CrossRefGoogle Scholar
  72. Walling DE (2006) Human impact on land–ocean sediment transfer by the world's rivers 37th Binghamton Geomorphology Symposium The Human Role in Changing Fluvial Systems 79:192–216CrossRefGoogle Scholar
  73. Warrick JA, Farnsworth KL (2009) Sources of sediment to the coastal waters of the Southern California bight. Geological Society of America Special Papers 454:39–52CrossRefGoogle Scholar
  74. Watson E, Byrne R (2013) Late Holocene marsh expansion in southern San Francisco Bay, California. Estuar Coasts 36:643–653CrossRefGoogle Scholar
  75. Weston N (2014) Declining sediments and rising seas: an unfortunate convergence for tidal wetlands. Estuaries and Coasts 37:1–23CrossRefGoogle Scholar
  76. Wigand C, Ardito T, Chaffee C, Ferguson W, Paton S, Raposa K, Vandemoer C, Watson E (2015) A climate change adaptation strategy for management of coastal marsh systems. Estuaries and Coasts:1–12Google Scholar
  77. Wood DA, Bui T-VD, Overton CT, Vandergast AG, Casazza ML, Hull JM, Takekawa JY (2017) A century of landscape disturbance and urbanization of the San Francisco Bay region affects the present-day genetic diversity of the California Ridgway’s rail (Rallus obsoletus obsoletus). Conservation Genetics 18:131–146CrossRefGoogle Scholar
  78. Young N, Carter L, Evangelista P (2011) A MaxEnt model v3. 3.3 e tutorial (ArcGIS v10). Natural Resource Ecology Laboratory, Colorado State University and the National Institute of Invasive Species ScienceGoogle Scholar
  79. Zedler JB (1982) The ecology of southern California coastal salt marshes: a community profile. U.S. Fish and Wildlife Service, Biological Services Program, Washington D.C. FWS/OBS-81/54, p 110Google Scholar
  80. Zedler JB, Callaway JC, Desmond JS, Vivian-Smith G, Williams GD, Sullivan G, Brewster AE, Bradshaw BK (1999) Californian salt-marsh vegetation: an improved model of spatial pattern. Ecosystems 2:19–35CrossRefGoogle Scholar
  81. Zedler JB, Powell AN (1993) Managing coastal wetlands - complexities, compromises, and concerns. Oceanus 36:19–28Google Scholar
  82. Zembal R, Hoffman SM (2012) Status and Distribution of the Light-footed Clapper Rail in California, 2012 Season. California Department of Fish and Game, Nongame Wildlife Program ReportGoogle Scholar
  83. Zembal R, Massey BW, Fancher JM (1989) Movements and activity patterns of the light-footed clapper rail. Journal of Wildlife Management 53:39–42CrossRefGoogle Scholar
  84. Zhang H, Gorelick SM (2014) Coupled impacts of sea-level rise and tidal marsh restoration on endangered California clapper rail. Biological Conservation 172:89–100CrossRefGoogle Scholar

Copyright information

© US Government 2018

Authors and Affiliations

  • Jordan A. Rosencranz
    • 1
    • 2
    • 3
  • Karen M. Thorne
    • 3
  • Kevin J. Buffington
    • 3
  • Cory T. Overton
    • 4
  • John Y. Takekawa
    • 3
    • 5
  • Michael L. Casazza
    • 4
  • Jennifer McBroom
    • 6
  • Julian K. Wood
    • 7
  • Nadav Nur
    • 7
  • Richard L. Zembal
    • 8
  • Glen M. MacDonald
    • 1
    • 9
  • Richard F. Ambrose
    • 1
    • 10
  1. 1.Institute of the Environment and SustainabilityUniversity of CaliforniaLos AngelesUSA
  2. 2.WRA, Inc.San RafaelUSA
  3. 3.Davis Field Station, Western Ecological Research CenterU.S. Geological SurveyDavisUSA
  4. 4.Dixon Field Station, Western Ecological Research CenterU.S. Geological SurveyDixonUSA
  5. 5.Suisun Resource Conservation DistrictSuisun CityUSA
  6. 6.Olofson Environmental, Inc.OaklandUSA
  7. 7.Point Blue Conservation SciencePetalumaUSA
  8. 8.Orange County Water DistrictFountain ValleyUSA
  9. 9.Department of GeographyUniversity of CaliforniaLos AngelesUSA
  10. 10.Department of Environmental Health SciencesUniversity of CaliforniaLos AngelesUSA

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