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Vanilla mosaic virus isolates from French Polynesia and the Cook Islands are Dasheen mosaic virus strains that exclusively infect vanilla

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Summary.

Sequence was determined for the coat protein (CP) gene and 3′ non-translated region (3′NTR) of two vanilla mosaic virus (VanMV) isolates from Vanilla tahitensis, respectively from the Cook Islands (VanMV-CI) and French Polynesia (VanMV-FP). Both viruses displayed distinctive features in the N-terminal region of their CPs; for VanMV-CI, a 16-amino-acid deletion including the aphid transmission-related DAG motif, and for VanMV-FP, a stretch of GTN repeats that putatively belongs to the class of natively unfolded proteins. VanMV-FP CP also has a novel DVG motif in place of the DAG motif, and an uncommon Q//V protease cleavage site. The sequences were compared to a range of Dasheen mosaic virus (DsMV) strains and to potyviruses infecting orchids. Identity was low to DsMV strains across the entire CP coding region and across the 3′NTR, but high across the CP core and the CI-6K2-NIa region. In accordance with current ICTV criteria for species demarcation within the family Potyviridae, VanMV-CI and VanMV-FP are strains of DsMV that exclusively infect vanilla.

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References

  • MJ Adams JF Antoniw CM Fauquet (2005) ArticleTitleMolecular criteria for genus and species discrimination within the family Potyviridae Arch Virol 150 459–479 Occurrence Handle10.1007/s00705-004-0440-6 Occurrence Handle1:CAS:528:DC%2BD2MXhvVSqsbY%3D Occurrence Handle15592889

    Article  CAS  PubMed  Google Scholar 

  • PH Berger (1992) ArticleTitleThe usefulness of aphid transmission as a taxonomic criterion for potyviruses Arch Virol Suppl 5 251–255 Occurrence Handle1:STN:280:ByyD1c3itFw%3D Occurrence Handle1450747

    CAS  PubMed  Google Scholar 

  • L Bos (1992) ArticleTitlePotyviruses, chaos or order? Arch Virol Suppl 5 31–46 Occurrence Handle1:STN:280:ByyD1c3it1I%3D Occurrence Handle1450755

    CAS  PubMed  Google Scholar 

  • Brunt A, Crabtree K, Dallwitz M, Gibbs A, Watson L (1996) Viruses of plants: descriptions and lists from the VIDE database. C.A.B. International, UK

  • AA Brunt (1992) ArticleTitleThe general properties of potyviruses Arch Virol Suppl 5 3–16 Occurrence Handle1:STN:280:ByyD1c3it1A%3D Occurrence Handle1450753

    CAS  PubMed  Google Scholar 

  • J Chen J Chen J Chen MJ Adams (2001) ArticleTitleMolecular characterisation of an isolate of Dasheen mosaic virus from Zantedeshia aethiopica in China and comparisons in the genus Potyvirus Arch Virol 146 1821–1829 Occurrence Handle1:CAS:528:DC%2BD3MXovVClsro%3D Occurrence Handle11699967

    CAS  PubMed  Google Scholar 

  • D Colinet J Kummert O Duterme P Lepoivre (1995) ArticleTitleDetection of plant viruses by PCR using group or virus specific primers (potyviruses, bymoviruses) Bull OEPP/EPPO Bull 25 289–299

    Google Scholar 

  • G Deborré W Jelkmann E Maiss (1995) ArticleTitleBiological and molecular biological investigations of several plum pox virus (PPV) isolates Acta Horticult 386 253–262

    Google Scholar 

  • S Dinant H Lot J Albouy C Kuziak M Meyer S Astier-Manifacier (1991) ArticleTitleNucleotide sequence of the 3′ terminal region of lettuce mosaic potyvirus RNA shows a Gln/Val dipeptide at the cleavage site between the polymerase and the coat protein Arch Virol 116 235–252 Occurrence Handle10.1007/BF01319245 Occurrence Handle1:CAS:528:DyaK38XhvVyktbY%3D Occurrence Handle2001176

    Article  CAS  PubMed  Google Scholar 

  • WG Dougherty JC Carrington (1988) ArticleTitleExpression and function of potyviral gene products Annu Rev Phytopathol 26 123–143 Occurrence Handle10.1146/annurev.py.26.090188.001011 Occurrence Handle1:CAS:528:DyaL1cXmtVOqsb0%3D

    Article  CAS  Google Scholar 

  • HJ Dyson PE Wright (2002) ArticleTitleCoupling of folding and binding for unstructured proteins Curr Opin Struct Biol 12 54–60 Occurrence Handle10.1016/S0959-440X(02)00289-0 Occurrence Handle1:CAS:528:DC%2BD38XhtF2it7c%3D Occurrence Handle11839490

    Article  CAS  PubMed  Google Scholar 

  • Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (2005) Virus taxonomy. The Eighth Report of the International Committee on Taxonomy of Viruses. Elsevier/Academic Press, London

  • S Flasinski BG Cassidy (1998) ArticleTitlePotyvirus aphid transmission requires helper component and homologous coat protein for maximal efficiency Arch Virol 143 2159–2172 Occurrence Handle10.1007/s007050050449 Occurrence Handle1:CAS:528:DyaK1MXisFertQ%3D%3D Occurrence Handle9856099

    Article  CAS  PubMed  Google Scholar 

  • MJ Frenkel JM Jilka DD Shukla CW Ward (1992) ArticleTitleDifferentiation of potyviruses and their strains by hybridization with the 3′ non-coding region of the viral genome J Virol Methods 36 51–62 Occurrence Handle10.1016/0166-0934(92)90156-8 Occurrence Handle1:CAS:528:DyaK38XhvVykt7o%3D Occurrence Handle1551936

    Article  CAS  PubMed  Google Scholar 

  • A Gal-On Y Antignus A Rosner B Raccah (1992) ArticleTitleA zucchini yellow mosaic virus coat protein gene mutation restores aphid transmissibility but has no effect on multiplication J Gen Virol 73 2183–2187 Occurrence Handle1:CAS:528:DyaK38XlvVyiu70%3D Occurrence Handle1402810

    CAS  PubMed  Google Scholar 

  • M Grisoni F Davidson C Hyrondelle K Farreyrol ML Caruana M Pearson (2004) ArticleTitleNature, incidence and symptomatology of viruses infecting Vanilla tahitensis in French Polynesia Plant Dis 88 119–124

    Google Scholar 

  • TA Hall (1999) ArticleTitleBioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95–98 Occurrence Handle1:CAS:528:DC%2BD3cXhtVyjs7Y%3D

    CAS  Google Scholar 

  • JM Hancock W Chaleeprom W Chaleeprom J Dale A Gibbs (1995) ArticleTitleReplication slippage in the evolution of potyviruses J Gen Virol 76 3229–3232 Occurrence Handle1:CAS:528:DyaK2MXhtVSjtbjM Occurrence Handle8847535

    CAS  PubMed  Google Scholar 

  • IE Johansen KE Keller WG Dougherty RO Hampton (1996) ArticleTitleBiological and molecular properties of a pathotype P-1 and a pathotype P-4 isolate of pea seed-borne mosaic virus J Gen Virol 77 1329–1333 Occurrence Handle1:CAS:528:DyaK28XjtlGguro%3D Occurrence Handle8683223

    CAS  PubMed  Google Scholar 

  • R Jordan MA Guaragna G Kinard S Lynn (2002) ArticleTitleDetection and first report of Dasheen mosaic virus and a second potyvirus infecting the terrestrial orchid Spiranthes cernua Acta Horticult 568 253–260 Occurrence Handle1:CAS:528:DC%2BD38Xjt1Wqsb0%3D

    CAS  Google Scholar 

  • SA Langeveld JM Dore J Memelink AFLM Derks CIM van der Vlugt CJ Asjes JF Bol (1991) ArticleTitleIdentification of potyviruses using the polymerase chain reaction with degenerate primers J Gen Virol 72 1531–1541 Occurrence Handle1:CAS:528:DyaK38Xht1alsr4%3D Occurrence Handle1677413

    CAS  PubMed  Google Scholar 

  • H Lecoq DE Purcifull (1992) ArticleTitleBiological variability of potyviruses, an example: zucchini yellow mosaic virus Arch Virol Suppl 5 229–234 Occurrence Handle1:STN:280:ByyD1c3itFA%3D Occurrence Handle1450743

    CAS  PubMed  Google Scholar 

  • K-C Lee PH Mahtani C-G Chng S-M Wong (1997) ArticleTitleSequence and phylogenetic analysis of the cytoplasmic inclusion protein gene of zucchini yellow mosaic potyvirus: its role in the classification of the Potyviridae Virus Genes 14 41–53 Occurrence Handle1:CAS:528:DyaK2sXktV2mt7Y%3D Occurrence Handle9208454

    CAS  PubMed  Google Scholar 

  • RH Li FW Zettler E Hiebert DE Purcifull FJ Morales (1999) ArticleTitleDifferentiation of dasheen mosaic potyvirus isolates based on variability in the apparent size of the capsid protein in Western blots J Phytopathol 147 359–364 Occurrence Handle10.1046/j.1439-0434.1999.00095.x Occurrence Handle1:CAS:528:DyaK1MXksFSgu78%3D

    Article  CAS  Google Scholar 

  • JJ López-Moya T Canto JR Díaz-Ruíz D López-Abella (1995) ArticleTitleTransmission by aphids of a naturally non-transmissible plum pox virus isolate with the aid of potato virus Y helper component J Gen Virol 76 2293–2297 Occurrence Handle7561767

    PubMed  Google Scholar 

  • JJ López-Moya RY Wang TP Pirone (1999) ArticleTitleContext of the coat protein DAG motif affects potyvirus transmissibility by aphids J Gen Virol 80 3281–3288 Occurrence Handle10567662

    PubMed  Google Scholar 

  • AM Mackenzie M Nolan K-J Wei MA Clements D Gowanlock BJ Wallace AJ Gibbs (1998) ArticleTitleCeratobium mosaic potyvirus: another virus from orchids Arch Virol 143 903–914 Occurrence Handle10.1007/s007050050341 Occurrence Handle1:CAS:528:DyaK1cXktVSit7k%3D Occurrence Handle9645197

    Article  CAS  PubMed  Google Scholar 

  • E Maiss U Timpe A Brisske W Jelkmann R Casper G Himmler D Mattanovich HWD Katinger (1989) ArticleTitleThe complete nucleotide sequence of plum pox virus RNA J Gen Virol 70 513–524 Occurrence Handle1:CAS:528:DyaL1MXmt1Kisrc%3D Occurrence Handle2732699

    CAS  PubMed  Google Scholar 

  • E Maiss R Casper G Deborré W Jelkmann (1995) ArticleTitleComplete nucleotide sequence of a plum pox potyvirus isolate (PPV-SC) deriving from sour cherries and influence of a coat protein sequence motif on aphid transmission Acta Horticult 386 340–345 Occurrence Handle1:CAS:528:DyaK2sXitFCltLg%3D

    CAS  Google Scholar 

  • DP Martin C Williamson D Posada (2004) ArticleTitleRDP2: recombination detection and analysis from sequence alignments Bioinformatics 20 1–3 Occurrence Handle10.1093/bioinformatics/bth048

    Article  Google Scholar 

  • RA Mumford SE Seal (1997) ArticleTitleRapid single-tube immunocapture RT-PCR for the detection of two yam potyviruses J Virol Methods 69 73–79 Occurrence Handle10.1016/S0166-0934(97)00141-9 Occurrence Handle1:CAS:528:DyaK2sXnvVSktL8%3D Occurrence Handle9504753

    Article  CAS  PubMed  Google Scholar 

  • K Namba (2001) ArticleTitleRoles of partly unfolded conformations in macromolecular self-assembly Genes Cells 6 1–12 Occurrence Handle10.1046/j.1365-2443.2001.00384.x Occurrence Handle1:CAS:528:DC%2BD3MXhsFSrsrs%3D Occurrence Handle11168592

    Article  CAS  PubMed  Google Scholar 

  • SS Pappu HR Pappu R Lastra CL Niblett (1994) ArticleTitleVariability in the length of the amino terminal sequence contributes to the capsid protein diversity among dasheen mosaic potyvirus isolates Arch Virol 136 407–413 Occurrence Handle10.1007/BF01321069 Occurrence Handle1:CAS:528:DyaK2MXmslyrug%3D%3D Occurrence Handle8031244

    Article  CAS  PubMed  Google Scholar 

  • SS Pappu HR Pappu EP Rybicki CL Niblett (1994) ArticleTitleUnusual amino-terminal sequence repeat characterizes the capsid protein of dasheen mosaic potyvirus J Gen Virol 75 239–242 Occurrence Handle1:CAS:528:DyaK2cXitFait7s%3D Occurrence Handle8113735

    CAS  PubMed  Google Scholar 

  • MN Pearson SP Pone (1988) ArticleTitleViruses of vanilla in Tonga Australasian Plant Pathol 17 59–60

    Google Scholar 

  • MN Pearson AA Brunt SP Pone (1990) ArticleTitleSome hosts and properties of a potyvirus infecting Vanilla fragrans (Orchidaceae) in the Kingdom of Tonga J Phytopathol 128 46–54

    Google Scholar 

  • MN Pearson GVH Jackson SP Pone RLJ Howitt (1993) ArticleTitleVanilla viruses in the South Pacific Plant Pathol 42 127–131

    Google Scholar 

  • MN Pearson JE Thomas JW Randles (1994) ArticleTitleDetection of an unidentified potyvirus from Roystonea regia palm using the polymerase chain reaction and degenerate, potyvirus specific, primers and potential problems arising from the amplification of host plant DNA sequences J Virol Methods 50 211–218 Occurrence Handle10.1016/0166-0934(94)90177-5 Occurrence Handle1:CAS:528:DyaK2MXisVCntrg%3D Occurrence Handle7714044

    Article  CAS  PubMed  Google Scholar 

  • AG Power (2000) ArticleTitleInsect transmission of plant viruses: a constraint on virus variability Curr Opin Plant Biol 3 336–340 Occurrence Handle10.1016/S1369-5266(00)00090-X Occurrence Handle1:STN:280:DC%2BD3czosF2mtQ%3D%3D Occurrence Handle10873852

    Article  CAS  PubMed  Google Scholar 

  • F Revers O Le Gall T Candresse M Le Romancer J Dunez (1996) ArticleTitleFrequent occurrence of recombinant potyvirus isolates J Gen Virol 77 1953–1965 Occurrence Handle1:CAS:528:DyaK28Xks1Omt7c%3D Occurrence Handle8760448

    CAS  PubMed  Google Scholar 

  • MJ Roossinck (1997) ArticleTitleMechanisms of plant virus evolution Annu Rev Phytopathol 35 191–209 Occurrence Handle10.1146/annurev.phyto.35.1.191 Occurrence Handle1:CAS:528:DyaK2sXmtVGhsro%3D Occurrence Handle15012521

    Article  CAS  PubMed  Google Scholar 

  • DD Shukla CW Ward (1988) ArticleTitleAmino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group J Gen Virol 69 2703–2710 Occurrence Handle1:CAS:528:DyaL1MXks1Wh

    CAS  Google Scholar 

  • DD Shukla R Lauricella CW Ward (1992) ArticleTitleSerology of potyviruses: current problems and some solutions Arch Virol Suppl 5 57–69 Occurrence Handle1:STN:280:ByyD1c3isVY%3D Occurrence Handle1450770

    CAS  PubMed  Google Scholar 

  • Shukla DD, Ward CW, Brunt AA (1994) The Potyviridae. Centre for Agriculture and Biosciences International, Cambridge University Press, Cambridge

  • Swofford DL (2001) PAUP*. Phylogenetic analysis using parsimony (*and other methods). Sinauer Associates, Sunderland, Massachusetts

  • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins (1997) ArticleTitleThe ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 24 4876–4882

    Google Scholar 

  • VN Uversky (2002) ArticleTitleWhat does it mean to be natively unfolded? Eur J Biochem 269 2–12 Occurrence Handle10.1046/j.0014-2956.2001.02649.x Occurrence Handle1:CAS:528:DC%2BD38XosFCqtg%3D%3D Occurrence Handle11784292

    Article  CAS  PubMed  Google Scholar 

  • van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (2000) Virus taxonomy: classification and nomenclature of viruses. Academic Press, London San Diego

  • YY Wang MN Pearson (1992) ArticleTitleSome characteristics of potyvirus isolates from Vanilla tahitensis in French Polynesia and the Cook Islands J Phytopathol 135 71–76 Occurrence Handle1:CAS:528:DyaK3sXpslKhtg%3D%3D

    CAS  Google Scholar 

  • YY Wang DL Beck RC Gardner MN Pearson (1993) ArticleTitleNucleotide sequence, serology and symptomatology suggest that Vanilla necrosis potyvirus is a strain of Watermelon mosaic virus II Arch Virol 129 93–103 Occurrence Handle10.1007/BF01316887 Occurrence Handle1:CAS:528:DyaK3sXmt1WnsL0%3D Occurrence Handle8470960

    Article  CAS  PubMed  Google Scholar 

  • GC Wisler FW Zettler L Mu (1987) ArticleTitleVirus infections of Vanilla and other orchids in French Polynesia Plant Dis 71 1125–1129

    Google Scholar 

  • XW Xiao MJ Frenkel DS Teakle CW Ward DD Shukla (1993) ArticleTitleSequence diversity in the surface-exposed amino-terminal region of the coat proteins of seven strains of sugarcane mosaic virus correlates with their host range Arch Virol 132 399–408 Occurrence Handle10.1007/BF01309548 Occurrence Handle1:CAS:528:DyaK2cXis1Glsbc%3D Occurrence Handle8379856

    Article  CAS  PubMed  Google Scholar 

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Authors and Affiliations

  1. School of Biological Sciences, The University of Auckland, Auckland, New Zealand

    K. Farreyrol & M. N. Pearson

  2. CIRAD, Pôle de Protection des Plantes, Saint Pierre, La Réunion

    M. Grisoni

  3. Hort Research, Mt. Albert Research Centre, Auckland, New Zealand

    D. Cohen & D. Beck

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  1. K. Farreyrol
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  3. M. Grisoni
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Farreyrol, K., Pearson, M., Grisoni, M. et al. Vanilla mosaic virus isolates from French Polynesia and the Cook Islands are Dasheen mosaic virus strains that exclusively infect vanilla. Arch Virol 151, 905–919 (2006). https://doi.org/10.1007/s00705-005-0680-0

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