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Complete genome sequences of anemone mosaic virus and ranunculus mild mosaic virus isolated from anemone imported from the Netherlands into Japan

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Abstract

Anemone mosaic virus (AnMV) and ranunculus mild mosaic virus (RanMMV) infect anemone plants, which exhibit characteristic mosaic patterns on their leaves. Employing next-generation sequencing of plant material imported from the Netherlands, the complete genome sequences of these two viruses were determined for the first time. AnMV and RanMMV have 9698 and 9537 nucleotides (nt), respectively, excluding the poly(A) tail. They share 80.0%/82.0% and 98.0%/97.0% nt/amino acid (aa) sequence identity, which is above the species demarcation value, in the previously reported AnMV and RanMMV coat protein sequences, but they share 69.0%/70.0% nt/aa sequence identity or less with other potyviruses in all 10 mature protein coding regions of the genome. Additionally, phylogenetic analysis confirmed the relationship of the AnMV and RanMMV genome sequences to previously reported partial sequences and placed them within the genus Potyvirus. These results show that these two viruses represent separate species within the genus Potyvirus.

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References

  1. Daughtrey ML, Wick RL, Peterson JL (1995) Compendium of flowering potted plant diseases. APS Press the American Phytopathological Society, Saint Paul

    Google Scholar 

  2. Loebenstein G, Lawson RH, Brunt AA (1995) Viruses and virus-like diseases of bulb and flower crops. John Wiley, Chichester

    Google Scholar 

  3. Lockhart BE, Westendorp JA (1998) Anemone—an additional perennial ornamental Host of Tobacco Rattle Virus in the U.S. Plant Dis 82:712. https://doi.org/10.1094/PDIS.1998.82.6.712B

    Article  CAS  PubMed  Google Scholar 

  4. Hollings M (1957) Anemone MOSAIC–A virus disease. Ann Appl Biol 45:44–61. https://doi.org/10.1111/j.1744-7348.1957.tb00442.x

    Article  Google Scholar 

  5. Pham KTK, de Kock MJD, Lemmers MEC, Derks AFLM (2011) Molecular identification of potyviruses infecting bulbous ornamentals by the analysis of coat protein (CP) sequences. Acta Hortic 901:167–172. https://doi.org/10.17660/ActaHortic.2011.901.21

    Article  Google Scholar 

  6. CABI invasive species compendium (2019) Datasheet Turnip Mosaic Virus (cabbage A virus mosaic). https://www.cabi.org/ISC/datasheet/54306. Accessed 1 Dec 2019

  7. Wylie SJ, Adams M, Chalam C, Kreuze J, López-Moya JJ, Ohshima K, Praveen S, Rabenstein F, Stenger D, Wang A, Zerbini FM, Ictv Report Consortium (2017) ICTV virus taxonomy profile: potyviridae. J Gen Virol 98:352–354. https://doi.org/10.1099/jgv.0.000740

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Turina M, Ciuffo M, Lenzi R, Rostagno L, Mela L, Derin E, Palmano S (2006) Characterization of four viral species belonging to the family Potyviridae isolated from Ranunculus asiaticus. Phytopathology 96:560–566. https://doi.org/10.1094/PHYTO-96-0560

    Article  CAS  PubMed  Google Scholar 

  9. Wang JH, Zhao S, Yang XM (2008) First report of Ranunculus mild mosaic virus on Ranunculus asiaticus in Yunnan Province, China. Plant Dis 92:1585. https://doi.org/10.1094/PDIS-92-11-1585A

    Article  CAS  PubMed  Google Scholar 

  10. Yanagisawa H, Tomita R, Katsu K, Uehara T, Atsumi G, Tateda C, Kobayashi K, Sekine KT (2016) Combined DECS analysis and next-generation sequencing enable efficient detection of novel plant RNA viruses. Viruses 8:70. https://doi.org/10.3390/v8030070

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 35:1547–1549. https://doi.org/10.1093/molbev/msy096

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Chung BY, Miller WA, Atkins JF, Firth AE (2008) An overlapping essential gene in the Potyviridae. Proc Natl Acad Sci U S A 105:5897–5902. https://doi.org/10.1073/pnas.0800468105

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Urcuqui-Inchima S, Haenni AL, Bernardi F (2001) Potyvirus proteins: a wealth of functions. Virus Res 74:157–175. https://doi.org/10.1016/S0168-1702(01)00220-9

    Article  CAS  PubMed  Google Scholar 

  14. Nigam D, LaTourrette K, Souza PFN, Garcia-Ruiz H (2019) Genome-wide variation in potyviruses. Front Plant Sci 10:1439. https://doi.org/10.3389/fpls.2019.01439

    Article  PubMed  PubMed Central  Google Scholar 

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Funding

No funding was received for conducting this study.

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Authors and Affiliations

  1. Tsukuba Farm, Yokohama Plant Protection Station, Nagamine, Tsukuba, Ibaraki, 305-0052, Japan

    Yuya Imamura, Moritsugu Oishi & Yuji Fujiwara

  2. Narita Branch, Yokohama Plant Protection Station, Aza-Tennamino, Komaino, Narita, Chiba, 282-0021, Japan

    Hironobu Yanagisawa

Authors
  1. Yuya Imamura
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  2. Moritsugu Oishi
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  3. Yuji Fujiwara
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  4. Hironobu Yanagisawa
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Contributions

All authors contributed to the study conception and design. Hironobu Yanagisawa supervised its execution. Material preparation was performed by MO and YF. Data collection and analysis were performed by YI. The first draft of the manuscript was written by YI, and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.

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Correspondence to Hironobu Yanagisawa.

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Handling Editor: Ralf Georg Dietzgen.

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Imamura, Y., Oishi, M., Fujiwara, Y. et al. Complete genome sequences of anemone mosaic virus and ranunculus mild mosaic virus isolated from anemone imported from the Netherlands into Japan. Arch Virol 166, 2337–2341 (2021). https://doi.org/10.1007/s00705-021-05133-8

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  • DOI: https://doi.org/10.1007/s00705-021-05133-8

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