Skip to main content
Log in

Structure of microbial communities in red ferralitic soils of Varadero National Park (Matanzas, Cuba)

  • Microbiology
  • Published:
Biology Bulletin Aims and scope Submit manuscript

Abstract

Comparative study of microbial communities in red ferralitic soil, as well as tree waste and phylloplane of woody plants, of Varadero National Park (Cuba) has been performed. It is shown that the total bacterial abundance and the length of the actinomycete mycelium in the studied soil samples (A horizon) are comparable to and the length of the viable fungal mycelium is lower than the analogous parameters recorded in forest soils of the temperate zone. It is noted that the viability of bacteria is close to that in forest soils of the temperate zone. The maximum concentration of soil biota is found in the A horizon of the studied soils, in contrast to forest biogeocenoses of the temperate zone, where soil biota is concentrated in the litter. It is shown for the first time that prokaryote communities are characterized by a significant presence of filterable forms of bacteria, the content of which increases in the series: soil (A horizon) → tree waste (dry leaves) → phylloplane (green leaves).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Boyandin, A.N., Prudnikova, S.V., Filippenko, M.L., Khrapov, E.A., Vasil’ev, A.D., and Volova, T.G, Biodegradation of polyhydroxyalkanoates by soil microbial communities of different structures and detection of PHA degrading microorganisms, Appl. Biochem. Microbiol., 2012, vol. 48, no. 1, pp. 28–36.

    Article  CAS  Google Scholar 

  • Cenciani, K., Lamais, M.R., Cerri, C.C., Basilio De Azevedo, L.C., and Feigl, B.J, Bacterial diversity and microbial biomass in forest, pasture and fallow soils in the southwestern Amazon basin, R. Ci. Solo, 2009, vol. 33, pp. 907–916.

    CAS  Google Scholar 

  • Duda, V.I., Suzina, N.E., Polivtseva, V.N., and Boronin, A.M, Ultramicrobacteria: formation of the concept and contribution of ultramicrobacteria to biology, Microbiology (Moscow), 2012, vol. 81, no. 4, pp. 379–390.

    Article  CAS  Google Scholar 

  • Gomez-Alvarez, V., King, G.M., and Nusslein, K, Comparative bacterial diversity in resent Hawaiian volcanic deposits of different ages, FEMS Microbiol. Ecol., 2007, vol. 60, pp. 60–73.

    Article  CAS  PubMed  Google Scholar 

  • Gonzales, G., Ley, R.E., Schmidt, S.K., Zou Xiaoming, and Seastedt, T.R, Soil ecological interactions: comparisons between tropical and subalpine forests, Oecologia, 2001, vol. 128, pp. 549–556.

    Article  Google Scholar 

  • González, I., Niebla, A., Lemus, M., González, L., Iznaga, I., Pé rez, M.E., and Vallin, C, Ecological approach of macrolide- lincosamides-streptogramin producing Actinomyces from Cuban soils, Lett. Appl. Microbiol., 1999, vol. 29, no. 3, pp. 147–150.

    Article  PubMed  Google Scholar 

  • Heuer, H., Krsek, M., Baker, P., Smalla, K., and Wellington, E, Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients, Appl. Environ. Microbiol., 1997, vol. 63, no. 8, pp. 3233–3241.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hop, D.V., Sakiyama, Y., Binh, C.T.T., Otoguro, M., Hang, D.T., Miyadoh, S., Luong, D.T., and Ando, K, Taxonomic and ecological studies of actinomycetes from Vietnam: isolation and genus-level diversity, J. Antibiot., 2011, vol. 64, pp. 599–606.

    Article  CAS  PubMed  Google Scholar 

  • Imberger, K.T. and Chin, C.Y, Spatial changes of soil fungal and bacterial biomass from a sub-alpine coniferous forest to grassland in humid, sub-tropical region, Biol. Fertil. Soil, 2001, vol. 33, pp. 105–110.

    Article  CAS  Google Scholar 

  • Kadulin, M.S., Konova, I.A., Lysak, L.V., Soina, V.S., Lapygina, E.V., and Zvyagintsev, D.G, Bacterial nanoforms of some soil concretions, Moscow Univ. Soil Sci. Bull., 2012, vol. 67, no. 1, pp. 39–44.

    Article  Google Scholar 

  • LIVE/DEAD BacLight Bacterial Viability Kit for microscopy and quantitative Assays, Product Inform., Mol. Probes, 2004, pp. 1–8.

  • Lysak, L.V., Lapygina, E.V., Konova, I.A., and Zvyagintsev, D.G, Definition of the physiological condition of bacteria in soil by means of luminescent dye L7012, Biol. Bull. (Moscow), 2009, vol. 36, no. 6, pp. 639–642.

    Article  CAS  Google Scholar 

  • Lysak, L.V., Lapygina, E.V., Konova, I.A., and Zvyagintsev, D.G, Population density and taxonomic composition of bacterial nanoforms in soils of Russia, Euras. Soil Sci., 2010, vol. 43, no. 7, pp. 765–770.

    Article  Google Scholar 

  • Lysak, L.V., Lapygina, E.V., Kadulin, M.S., and Konova, I.A, Number, viability, and diversity of the filterable forms of prokaryotes in sphagnous high-moor peat, Biol. Bull. (Moscow), 2014, vol. 41, no. 3, pp. 228–232.

    Google Scholar 

  • Metody pochvennoi biokhimii i mikrobiologii (Methods of Soil Microbiology and Biochemistry), Zvyagintsev, D.G., Ed., Moscow: Izd. MGU, 1991. Natsional’nyi atlas Kuby (The National Atlas of Cuba), Gavana: Gavana, 1970.

  • Panikov, N, Contribution of nanosized bacteria to the total biomass and activity of a soil microbial community, Adv. Appl. Microbiol., 2005, vol. 57, pp. 245–296.

    Article  CAS  PubMed  Google Scholar 

  • Paula, F.S., Rodrigues, J.L.M., Zhou, J., Wu, L., Mueller, R.C., Mirza, B.S., Bohannan, B.J.M., Nusslein, K., Tiedje, J.M., and Pellizari, V.H, Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities, Mol. Ecol., 2014, vol. 23, pp. 2988–2999.

    PubMed  Google Scholar 

  • Polyanskaya, L.M., Geidebrekht, V.V., Stepanov, A.L., and Zvyagintsev, D.G, The distribution of abundance and biomass of microorganisms along the profile of zonal soil types, Pochvovedenie, 1995, no. 5, pp. 566–572.

    Google Scholar 

  • Remans, R., Ramaekers, L., Schelkens, S., Hernandes, G., Garcia, A., Reyes, J.L., Mendez, N., Toscano, V., Mulling, M., and Galvez, L, Effect of Rhizobium–Azospirillum coinoculation on nitrogen fixation and yield of two contrasting Phaseolus vulgaris L. genotypes cultivated across different environments in Cuba, Plant Soil, 2008, vol. 312, nos. 1–2, pp. 25–37.

    Article  CAS  Google Scholar 

  • Soina, V.S., Lysak, L.V., Konova, I.A., Lapygina, E.V., and Zvyagintsev, D.G, Study of ultramicrobacteria (nanoforms) in soils and subsoil deposits by electron microscopy, Euras. Soil Sci., 2012, vol. 45, no. 11, pp. 1048–1056.

    Article  Google Scholar 

  • Stroganova, M.N., Pochvy i pochvennyi pokrov mira: geografiya, genezis i ekologiya. Elektronnoe uchebnoe posobie (Soils and Soil Cover the World: Geography, Genesis, and Ecology. Electronic Textbook), Moscow, 2010.

    Google Scholar 

  • Vasil’ev, D.V., Karpov, V.A., Kozhevnikov, I.V., Prudnikova, S.V., Rudnev V.P., Suan Bui Ba, Zung Vu V’et, and Gitel’zon, I.I, Biodegradation of polyhydroxyalkanoates (PHAs) in the South China Sea and identification of PHAdegrading bacteria, Microbiology (Moscow), 2011, vol. 80, no. 2, pp. 252–260.

    Article  Google Scholar 

  • Velimirov, B, Nanobacteria, ultramicrobacteria and starvation forms: a search for the smallest metabolizing bacterium, Microb. Envir., 2001, vol. 16, no. 2, pp. 67–77.

    Article  Google Scholar 

  • Waldrop, M.P., Balser, T.C., and Firestone, M.K, Linking microbial community to function in tropical soil, Soil Biol. Biochem., 2000, vol. 32, pp. 1837–1846.

    Article  CAS  Google Scholar 

  • Zenova, G.M., Dubrova, M.S., Kuznetsova, A.I., Gracheva, T.A., and Zvyagintsev, D.G, Ecological and taxonomic features of actinomycetal complexes in soils of the Lake Elton Basin, Euras. Soil Sci., 2016, vol. 49, no. 2, pp. 213–216.

    Article  Google Scholar 

  • Zonn, S.V., Pochvoobrazovanie i pochvy subtropikov i tropikov (Soil Formation and Soils of Subtropics and Tropics), Moscow: Izd. Univ. Druzhby narodov, 1974.

    Google Scholar 

  • Zvyagintsev, D.G., Pochva i mikroorganizmy (Soil and Microorganisms), Moscow: Izd. MGU, 1987.

    Google Scholar 

  • Zvyagintsev, D.G., Bab’eva, I.P., Dobrovol’skaya, T.G., Zenova, G.M., Lysak, L.V., and Mirchink, T.G, Verticallayered organization of microbial communities of forest ecosystems, Mikrobiologiya, 1993, vol. 62, no. 1, pp. 5–36.

    Google Scholar 

  • Zvyagintsev, D.G., Bab’eva, I.P., Dobrovol’skaya, T.G., and Chernov, I.Yu., Development of ideas about the structure of microbial communities, Pochvovedenie, 1999, no. 1, pp. 134–144.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to L. V. Lysak.

Additional information

Original Russian Text © E.V. Lapygina, L.V. Lysak, A.G. Kudinova, 2017, published in Izvestiya Akademii Nauk, Seriya Biologicheskaya, 2017, No. 3, pp. 244–249.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Lapygina, E.V., Lysak, L.V. & Kudinova, A.G. Structure of microbial communities in red ferralitic soils of Varadero National Park (Matanzas, Cuba). Biol Bull Russ Acad Sci 44, 261–265 (2017). https://doi.org/10.1134/S1062359017020091

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1062359017020091

Navigation