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Effect of Leucine M196 Substitution by Histidine on Electronic Structure of the Primary Electron Donor and Electron Transfer in Reaction Centers from Rhodobacter sphaeroides

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Abstract

In our recent X-ray study, we demonstrated that substitution of the natural leucine residue M196 with histidine in the reaction center (RC) from Rhodobacter (Rba.) sphaeroides leads to formation of a close contact between the genetically introduced histidine and the primary electron donor P (bacteriochlorophylls (BChls) PA and PB dimer) creating a novel pigment—protein interaction that is not observed in native RCs. In the present work, the possible nature of this novel interaction and its effects on the electronic properties of P and the photochemical charge separation in isolated mutant RCs L(M196)H are investigated at room temperature using steady-state absorption spectroscopy, light-induced difference FTIR spectroscopy, and femtosecond transient absorption spectroscopy. The results are compared with the data obtained for the RCs from Rba. sphaeroides pseudo-wild type strain. It is shown that the L(M196)H mutation results in a decrease in intensity and broadening of the long-wavelength Qy absorption band of P at ∼865 nm. Due to the mutation, there is also weakening of the electronic coupling between BChls in the radical cation P+ and increase in the positive charge localization on the PA molecule. Despite the significant perturbations of the electronic structure of P, the mutant RCs retain high electron transfer rates and quantum yield of the P+Q A state (QA is the primary quinone acceptor), which is close to the one observed in the native RCs. Comparison of our results with the literature data suggests that the imidazole group of histidine M196 forms a π-hydrogen bond with the π-electron system of the PB molecule in the P dimer. It is likely that the specific (T-shaped) spatial organization of the π-hydrogen interaction and its potential heterogeneity in relation to the bonding energy is, at least partially, the reason that this type of interaction between the protein and the pigment and quinone cofactors is not realized in the native RCs.

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Abbreviations

ΔA:

absorbance change

BA :

monomeric bacteriochlorophyll in the active cofactors branch

BChl:

bacteriochlorophyll

BPheo:

bacteriopheophytin

EADS:

evolution-associated decay spectra

FTIR:

Fourier transform infrared spectroscopy

HA and HB :

BPheo molecules in the active and inactive cofactor branches, respectively

P:

primary electron donor, BChl dimer

PA and PB :

BChl molecules constituting P

psWt:

pseudo-wild type

QA :

primary quinone acceptor

QB :

secondary quinone acceptor

Rba. sphaeroides :

Rhodobacter sphaeroides

RC:

reaction center

References

  1. Liao, S. M., Du, Q. S., Meng, J. Z., Pang, Z. W., and Huang, R. B. (2013) The multiple roles of histidine in protein interactions, Chem. Cent. J., 7, 44–55, DOI: https://doi.org/10.1186/1752-153X-7-44.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Fufina, T. Y., Vasilieva, L. G., Gabdulkhakov, A. G., and Shuvalov, V. A. (2015) The L(M196)H mutation in Rhodobacter sphaeroides reaction center results in new electrostatic interactions, Photosynth. Res., 125, 23–29, DOI: https://doi.org/10.1007/s11120-014-0062-0.

    Article  CAS  PubMed  Google Scholar 

  3. Lutz, M., and Mantele, W. (1991) Vibrational spectroscopy of chlorophylls, in Chlorophylls (Scheer, H., ed.) CRC Press, Boca Raton, FL, pp. 855–902.

    Google Scholar 

  4. Breton, J., Nabedryk, E., and Parson, W. W. (1992) A new infrared electronic transition of the oxidized primary electron donor in bacterial reaction centers: a way to assess resonance interactions between the bacteriochlorophylls, Biochemistry, 31, 7503–7510, DOI: https://doi.org/10.1021/bi00148a010.

    Article  CAS  PubMed  Google Scholar 

  5. Gabdulkhakov, A. G., Fufina, T. Y., Vasilieva, L. G., Mueller, U., and Shuvalov, V. A. (2013) Expression, purification, crystallization and preliminary X-ray structure analysis of wild-type and L(M196)H mutant Rhodobacter sphaeroides reaction centres, Acta. Crystallogr. Sect. F, 69, 506–509, DOI: https://doi.org/10.1107/S1744309113006398.

    Article  CAS  Google Scholar 

  6. Zabelin, A. A., Fufina, T. Y., Vasilieva, L. G., Shkuropatova, V. A., Zvereva, M. G., Shkuropatov, A. Y., and Shuvalov, V. A. (2009) Mutant reaction centers of Rhodobacter sphaeroides I(L177)H with strongly bound bacteriochlorophyll a: structural properties and pigment-protein interactions, Biochemistry (Moscow), 74, 68–74, DOI: https://doi.org/10.1134/S0006297909010106.

    Article  CAS  Google Scholar 

  7. Khatypov, R. A., Khristin, A. M., Fufina, T. Yu., and Shuvalov, V. A. (2017) An alternative pathway of light-induced transmembrane electron transfer in photosynthetic reaction centers of Rhodobacter sphaeroides, Biochemistry (Moscow), 82, 692–697, DOI: https://doi.org/10.1134/S0006297917060050.

    Article  CAS  Google Scholar 

  8. Van Stokkum, I. H. M., Larsen, D. S., and van Grondelle, R. (2004) Global and target analysis of time-resolved spectra, Biochim. Biophys. Acta, 1657, 82–104, DOI: https://doi.org/10.1016/j.bbabio.2004.04.011.

    Article  CAS  PubMed  Google Scholar 

  9. Snellenburg, J. J., Laptenok, S. P., Seger, R., Mullen, K. M., and van Stokkum, I. H. M. (2012) Glotaran: a Java-based graphical user interface for the R package TIMP, J. Stat. Soft., 49, 1–22, DOI: https://doi.org/10.18637/jss.v049.i03.

    Article  Google Scholar 

  10. Thompson, M. A., Zerner, M. C., and Fajer, J. (1991) A theoretical examination of the electronic structure and excited states of the bacteriochlorophyll b dimer from Rhodopseudomonas viridis, J. Phys. Chem., 95, 5693–5700, DOI: https://doi.org/10.1021/j100167a058.

    Article  CAS  Google Scholar 

  11. Parson, W. W., and Warshel, A. (1987) Spectroscopic properties of photosynthetic reaction centers. 2. Application of the theory to Rhodopseudomonas viridis, J. Am. Chem. Soc., 109, 6152–6163, doi: https://doi.org/10.1021/ja00254a040

    Article  CAS  Google Scholar 

  12. Naberdyk, E., Allen, J. P., Taguchi, A. K. W., Williams, J. C., Woodbury, N. W, and Breton, J. (1993) Fourier transform infrared study of the primary electron donor in chromatophores of Rhodobacter sphaeroides with reaction centers genetically modified at residues M160 and L131, Biochemistry, 32, 13879–13885, DOI: https://doi.org/10.1021/bi00213a017.

    Article  Google Scholar 

  13. Reimers, J. R., and Hush, N. S. (2003) Modeling the bacterial photosynthetic reaction center. VII. Full simulation of the intervalence hole-transfer absorption spectrum of the special-pair radical cation, J. Chem. Phys., 119, 3262–3277, DOI: https://doi.org/10.1063/1.1589742.

    Article  CAS  Google Scholar 

  14. Malferrari, M., Turina, P., Francia, F., Mezzetti, A., Leibl, W., and Venturoli, G. (2015) Dehydration affects the electronic structure of the primary electron donor in bacterial photosynthetic reaction centers: evidence from visible-NIR and light-induced difference FTIR spectroscopy, Photochem. Photobiol. Sci., 14, 238–251, doi:https://doi.org/10.1039/c4pp00245h.

    Article  CAS  PubMed  Google Scholar 

  15. Sun, C., Carey, A.-M., Gao B.-R., Wraight, C. A., Woodbury, N. W., and Lin, S. (2016) Ultrafast electron transfer kinetics in the LM dimer of bacterial photosynthetic reaction center from Rhodobacter sphaeroides, J. Phys. Chem. B, 120, 5395–5404, DOI: https://doi.org/10.1021/acs.jpcb.6b05082.

    Article  CAS  PubMed  Google Scholar 

  16. Arlt, T., Schmidt, S., Kaiser, W., Lauterwasser, C., Meyer, M., Scheer, H., and Zinth, W. (1993) The accessory bacteriochlorophyll: a real electron carrier in primary photosynthesis, Proc. Natl. Acad. Sci. USA, 90, 11757–11761, DOI: https://doi.org/10.1073/pnas.90.24.11757.

    Article  CAS  PubMed  Google Scholar 

  17. Shkuropatov, A. Ya., and Shuvalov, V. A. (1993) Electron transfer in pheophytin a-modified reaction centers from Rhodobacter sphaeroides (R-26), FEBS Lett., 322, 168–172, DOI: https://doi.org/10.1016/0014-5793(93)81561-D.

    Article  CAS  PubMed  Google Scholar 

  18. Kennis, J. T. M., Shkuropatov, A. Ya., van Stokkum, I. H. M., Gast, P., Hoff, A. J., Shuvalov, V. A., and Aartsma, T. J. (1997) Formation of a long-lived P+B A state in plant pheophytin-exchanged reaction centers of Rhodobacter sphaeroides R26 at low temperature, Biochemistry, 36, 16231–16238, DOI: https://doi.org/10.1021/bi9712605.

    Article  CAS  PubMed  Google Scholar 

  19. Zinth, W., and Wachtveitl, J. (2005) The first picoseconds in bacterial photosynthesis — ultrafast electron transfer for the efficient conversion of light energy, Chem. Phys. Chem., 6, 871–880, DOI: https://doi.org/10.1002/cphc.200400458.

    Article  CAS  PubMed  Google Scholar 

  20. Khatypov, R. A., Khmelnitskiy, A. Yu., Khristin, A. M., Fufina, T. Yu., Vasilieva, L. G., and Shuvalov, V. A. (2012) Primary charge separation within P870* in wild type and heterodimer mutants in femtosecond time domain, Biochim. Biophys. Acta, 1817, 1392–1398, DOI: https://doi.org/10.1016/j.bbabio.2011.12.007.

    Article  CAS  PubMed  Google Scholar 

  21. Vasilieva, L. G., Fufina, T. Y., Gabdulkhakov, A. G., Leonova, M. M., Khatypov, R. A., and Shuvalov, V. A. (2012) The site-directed mutation I(L177)H in Rhodobacter sphaeroides reaction center affects coordination of PA and BB bacteriochlorophylls, Biochim. Biophys. Acta, 1817, 1407–1417, DOI: https://doi.org/10.1016/j.bbabio.2012.02.008.

    Article  CAS  PubMed  Google Scholar 

  22. DeLano, W. L. (2002) The PyMOL molecular graphics system (http://www.pymol.org).

    Google Scholar 

  23. Lin, X., Murchison, H. A., Nagarajan, V., Parson, W. W., Allen, J. P., and Williams, J. C. (1994) Specific alteration of the oxidation potential of the electron donor in reaction centers from Rhodobacter sphaeroides, Proc. Natl. Acad. Sci. USA, 91, 10265–10269, DOI: https://doi.org/10.1073/pnas.91.22.10265.

    Article  CAS  PubMed  Google Scholar 

  24. Allen, J. P., and Williams, J. C. (1995) Relationship between the oxidation potential of the bacteriochlorophyll dimer and electron transfer in photosynthetic reaction centers, J. Bioenerg. Biomembr., 27, 275–283, DOI: https://doi.org/10.1007/BF02110097.

    Article  CAS  PubMed  Google Scholar 

  25. Williams, J. C., Alden, R. G., Murchison, H. A., Peloquin, J. M., Woodbury, N. W., and Allen, J. P. (1992) Effects of mutations near the bacteriochlorophylls in reaction centers from Rhodobacter sphaeroides, Biochemistry, 31, 11029–11037, DOI: https://doi.org/10.1021/bi00160a012.

    Article  CAS  PubMed  Google Scholar 

  26. Kaupp, M. (2002) The function of photosystem I. Quantum chemical insight into the role of tryptophan—quinone interactions, Biochemistry, 41, 2895–2900, DOI: https://doi.org/10.1021/bi0159783.

    Article  CAS  PubMed  Google Scholar 

  27. Wang, Y., Mao, L., and Hu, X. (2004) Insight into the structural role of carotenoids in the photosystem I: a quantum chemical analysis, Biophys. J., 86, 3097–3111, DOI: https://doi.org/10.1016/S0006-3495(04)74358-1.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Allen, J. P., and Williams, J. C. (2006) The influence of protein interactions on the properties of the bacteriochlorophyll dimer in reaction centers, in Chlorophylls and Bacteriochlorophylls: Biochemistry, Biophysics, Functions and Applications (Grimm, B., Porra, R. J., Rudiger, W., and Scheer, H., eds.) Springer, The Netherlands, pp. 283–295.

    Chapter  Google Scholar 

  29. Bylina, E. J., Kirmaer, C., McDowell, L., Holten, D., and Youvan, D. C. (1988) Influence of an amino acid residue on the optical properties and electron transfer dynamics of a photosynthetic reaction centre complex, Nature, 336, 182–184, DOI: https://doi.org/10.1038/336182a0.

    Article  CAS  Google Scholar 

  30. Flores, M., Isaacson, R., Abresch, E., Calvo, R., Lubitz, W., and Feher, G. (2007) Protein—cofactor interactions in bacterial reaction centers from Rhodobacter sphaeroides R-26: II. Geometry of the hydrogen bonds to the primary quinone Q A by 1H and 2H ENDOR spectroscopy, Biophys. J., 92, 671–682, DOI: https://doi.org/10.1529/biophysj.106.092460.

    Article  CAS  PubMed  Google Scholar 

  31. Steiner, T., and Koellner, G. (2001) Hydrogen bonds with π-acceptors in proteins: frequencies and role in stabilizing local 3D structure, J. Mol. Biol., 305, 535–557, DOI: https://doi.org/10.1006/jmbi.2000.4301.

    Article  CAS  PubMed  Google Scholar 

  32. Du, Q.-S., Wang, Q.-Y., Du, L.-Q., Chen, D., and Huang, R.-B. (2013) Theoretical study on the polar hydrogen—π (Hp-π) interactions between protein side chains, Chem. Cent. J., 7, 92–99, DOI: https://doi.org/10.1186/1752-153X-7-92.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Zabelin, A.A., Fufina, T.Y., Khristin, A.M. et al. Effect of Leucine M196 Substitution by Histidine on Electronic Structure of the Primary Electron Donor and Electron Transfer in Reaction Centers from Rhodobacter sphaeroides. Biochemistry Moscow 84, 520–528 (2019). https://doi.org/10.1134/S0006297919050067

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