Abstract
Seed endophytes are microorganisms that exist in the internal tissues of seeds and do not cause any obvious tissue damage or adverse effects on the host. Most of them are passed down from generation to generation by vertical transmission and become the first microorganisms of the plant and then as the basis to establish the plant endophyte community. Various kinds of plant species have been investigated for seed endophytes, and the results showed that the diversity of seed endophytes is lower than that of leaves, stems, and roots. However, it was found that some core endophytes are kept in the seed. They can promote host plant growth by phytohormone production, nitrogen fixation, potassium and phosphorus dissolving, etc., or through improving other nutrient absorption. Particularly, they can enhance host plant stress resistance by producing active metabolites or/and regulating a host plant’s antioxidant system and related resistance genes. There are so many kinds of seed endophytes that have been reported, and among them, the most common endophytic bacteria are Firmicutes, Proteobacteria, Actinomycetes, and Bacteroidetes, while the most common endophytic fungi are Ascomycetes and Basidiomycetes. The present paper reviews the diversity of seed endophytes and their role in host plant stress resistance, and some problems in their applications in agricultural production are discussed.
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References
Abideen Z, Cardinale M, Zulfiqar F, Koyro HW, Rasool SG, Hessini K, Darbali W, Zhao F, Siddique KHM (2022) Seed endophyte bacteria enhance drought stress tolerance in Hordeum vulgare by regulating, physiological characteristics, antioxidants and minerals uptake. Front Plant Sci 13:980046. https://doi.org/10.3389/fpls.2022.980046
Afzal I, Shinwari ZK, Sikandar S, Shahzad S (2019) Plant beneficial endophytic bacteria: mechanisms, diversity, host range and genetic determinants. Microbiol Res 221:36–49. https://doi.org/10.1016/j.micres.2019.02.001
Ali M, Ali Q, Sohail MA, Ashraf MF, Saleem MH, Hussain S, Zhou L (2021) Diversity and taxonomic distribution of endophytic bacterial community in the rice plant and its prospective. Int J Mol Sci 22:10165. https://doi.org/10.3390/ijms221810165
Balali-Mood M, Naseri K, Tahergorabi Z, Khazdair MR, Sadeghi M (2021) Toxic mechanisms of five heavy metals: mercury, lead, chromium, cadmium, and arsenic. Front Pharmacol 12:643972. https://doi.org/10.3389/fphar.2021.643972
Bomfim CSG, Silva VB, Cordovez V, Cursino LHS, Mattos WS, Santos JCS, Souza LSB, Dantas FB, Freitas ADS, Fernandes-Júnior PI (2020) Endophytic bacteria naturally inhabiting commercial maize seeds occupy different niches and are efficient plant growth-promoting agents. Symbiosis 81:255–269. https://doi.org/10.1007/s13199-020-00701-z
Brader G, Company S, Mitter B, Trognitz F, Sessitsch A (2014) Metabolic potential of endophytic bacteria. Curr Opin Biotechnol 27:30–37. https://doi.org/10.1016/j.copbio.2013.09.012
Carrión VJ, Perez-Jaramillo J, Cordovez V, Tracanna V, Hollander M, Ruiz-Buck D, Mendes LW, Ijcken WFJ, Gomez-Exposito R, Elsayed SS, Mohanraju P, Arifah A, Oost J, Paulson JN, Mendes R, Wezel GP, Medema MH, Raaijmakers JM (2019) Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science 366:606–612. https://doi.org/10.1126/science.aaw9285
Chakrabarti M, Nagabhyru P, Schardl CL, Dinkins RD (2022) Differential gene expression in tall fescue tissues in response to water deficit. Plant Genome 15:e20199. https://doi.org/10.1002/tpg2.20199
Chang X, Kingsley KL, White JF (2021) Chemical interactions at the interface of plant root hair cells and intracellular bacteria. Microorganisms 9:1041. https://doi.org/10.3390/microorganisms9051041
Chen YQ, Su KQ, Li CJ, White JF (2021) Interactive effects of Epichloë endophyte, dormancy-breaking treatments and geographic origin on seed germination of Achnatherum inebrians. Microorganisms 9:2183. https://doi.org/10.3390/microorganisms9112183
Chen KX, Tang WT, Li LN, Li SS, He LP, Li HY (2021) Functional mechanism of seed endophytes enhancing heavy metal resistance of host plants: a review. Microbiol China 48:2187–2194. https://doi.org/10.13344/j.microbiol.china.200925
Cheng C, Wang R, Sun LJ, He LY, Sheng XF (2021a) Cadmium-resistant and arginine decarboxylase-producing endophytic Sphingomonas sp. C40 decreases cadmium accumulation in host rice (Oryza sativa Cliangyou 513). Chemosphere 275:130109. https://doi.org/10.1016/j.chemosphere.2021.130109
Cheng C, Wang JF, Hou WP, Malik K, Zhao CZ, Niu XL, Liu YL, Huang R, Li CJ, Nan ZB (2021b) Elucidating the molecular mechanisms by which seed-borne endophytic fungi, Epichloë gansuensis, increases the tolerance of Achnatherum inebrians to NaCl stress. Int J Mol Sci 22:13191. https://doi.org/10.3390/ijms222413191
Chitnis VR, Suryanarayanan TS, Nataraja KN, Prasad SR, Oelmüller R, Shaanker RU (2020) Fungal endophyte-mediated crop improvement: the way ahead. Front Plant Sci 11:561007. https://doi.org/10.3389/fpls.2020.561007
Chu L, Li W, Li XY, Xiong Z, Li HY (2017) Diversity and heavy metal resistance of endophytic fungi from seeds of hyperaccumulators. Jiangsu J Agr Sci 33:43–49. https://doi.org/10.3969/j.issn.1000-4440.2017.01.007
Cocq KL, Gurr SJ, Hirsch PR, Mauchline TH (2017) Exploitation of endophytes for sustainable agricultural intensification: exploitation of endophytes. Mol Plant Pathol 18:469–473. https://doi.org/10.1111/mpp.12483
Dai Y, Li XY, Wang Y, Li CX, He Y, Lin HH, Wang T, Ma XR (2020) The differences and overlaps in the seed-resident microbiome of four leguminous and three gramineous forages. Microb Biotechnol 13:1461–1476. https://doi.org/10.1111/1751-7915.13618
Daisley BA, Monachese M, Trinder M, Bisanz JE, Chmiel JA, Burton JP, Reid G (2019) Immobilization of cadmium and lead by Lactobacillus Rhamnosus GR-1 mitigates apical-to-basolateral heavy metal translocation in a Caco-2 model of the intestinal epithelium. Gut Microbes 10:321–333. https://doi.org/10.1080/19490976.2018.1526581
Diabankana RGC, Afordoanyi DM, Safin RI, Nizamov RM, Karimova LZ, Validov SZ (2021) Antifungal properties, abiotic stress resistance, and biocontrol ability of Bacillus mojavensis PS17. Curr Microbiol 78:3124–3132. https://doi.org/10.1007/s00284-021-02578-7
Dong D (2022) Function research glycosyltransferases genes of UGT43 and UGT73C1 involved in drought and salt stress tolerance in tomato. Degree of Master, Harbin Normal University. https://doi.org/10.27064/d.cnki.ghasu.2022.000055
Frank A, Saldierna Guzmán J, Shay J (2017) Transmission of bacterial endophytes. Microorganisms 5:70. https://doi.org/10.3390/microorganisms5040070
Gond SK, Bergen MS, Torres MS, White JF (2015) Endophytic Bacillus spp. produce antifungal lipopeptides and induce host defence gene expression in maize. Microbiol Res 172:79–87. https://doi.org/10.1016/j.micres.2014.11.004
Hardoim PR, Overbeek LS, van Elsas JD (2008) Properties of bacterial endophytes and their proposed role in plant growth. Trends Microbiol 16:463–471. https://doi.org/10.1016/j.tim.2008.07.008
Hardoim PR, Overbeek LS, Berg G, Pirttilä AM, Compant S, Campisano A, Döring M, Sessitsch A (2015) The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes. Microbiol Mol Biol Rev 79:293–320. https://doi.org/10.1128/MMBR.00050-14
Harrison JG, Griffin EA (2020) The diversity and distribution of endophytes across biomes, plant phylogeny and host tissues: how far have we come and where do we go from here? Environ Microbiol 22:2107–2123. https://doi.org/10.1111/1462-2920.14968
Herrera SD, Grossi C, Zawoznik M, Groppa MD (2016) Wheat seeds harbour bacterial endophytes with potential as plant growth promoters and biocontrol agents of Fusarium graminearum. Microbiol Res 186–187:37–43. https://doi.org/10.1016/j.micres.2016.03.002
Hu Q, Wu Q, Dai BH, Cui JW, Khalid A, Li Y, Wang ZG (2022) Fermentation optimization and amylase activity of endophytic Bacillus velezensis D1 isolated from corn seeds. J Appl Microbiol 132:3640–3649. https://doi.org/10.1111/jam.15503
Jagannath S, Konappa N, Lokesh A, Bhuvaneshwari DT, Udayashankar AC, Chowdappa S, Cheluviah M, Satapute P, Jogaiah S (2021) Bioactive compounds guided diversity of endophytic fungi from Baliospermum montanum and their potential extracellular enzymes. Anal Biochem 614:114. https://doi.org/10.1016/j.ab.2020.114024
Janeeshma E, Puthur JT (2021) Potential role of microbial endophytes in xenobiotic stress management. In: Mishra VK, Kumar A (eds) Sustainable environmental clean-up. Academic Press, Elsevier, United Kingdom, pp 165–185
Janeeshma E, Kalaji HM, Puthur JT (2021) Differential responses in the photosynthetic efficiency of Oryza sativa and Zea mays on exposure to Cd and Zn toxicity. Acta Physiol Plant 11:13307. https://doi.org/10.1007/s11738-020-03178-x
Jeong S, Kim TM, Choi BW, Kim YS, Kim ES (2021) Invasive Lactuca serriola seeds contain endophytic bacteria that contribute to drought tolerance. Sci Rep 11:13307. https://doi.org/10.1038/s41598-021-92706-x
Kaga H, Mano H, Tanaka F, Watanabe A, Kaneko S, Morisaki H (2009) Rice seeds as sources of endophytic bacteria. Microbes Environ 24:154–162. https://doi.org/10.1264/jsme2.me09113
Kauppinen M, Saikkonen K, Helander M, Pirttilä AM, Wäli PR (2016) Epichloë grass endophytes in sustainable agriculture. Nat Plants 2:15224. https://doi.org/10.1038/nplants.2015.224
Khalaf EM, Raizada MN (2018) Bacterial seed endophytes of domesticated Angelica sinensis antagonize fungal and oomycete pathogens including powdery mildew. Front Microbiol 9:42. https://doi.org/10.3389/fmicb.2018.00042
Khalid M, Rahman S, Huang DF (2019) Molecular mechanism underlying Piriformospora indica-mediated plant improvement/protection for sustainable agriculture. Acta Biochim Biophys Sin (shanghai) 51:229–242. https://doi.org/10.1093/abbs/gmz004
Kolbas A, Kidd P, Guinberteau J, Jaunatre R, Herzig R, Mench M (2015) Endophytic bacteria take the challenge to improve Cu phytoextraction by sunflower. Environ Sci Pollut Res 22:5370–5382. https://doi.org/10.1007/s11356-014-4006-1
Koskimäki J, Pohjanen J, Kvist J, Fester T, Härtig C, Podolich O, Fluch S, Edesi J, Häggman H, Pirttilä AM (2022) The meristem-associated endosymbiont Methylorubrum extorquens DSM13060 reprograms development and stress responses of pine seedlings. Tree Physiol 42:391–410. https://doi.org/10.1093/treephys/tpab102
Kouzai Y, Akimoto-Tomiyama C (2022) A seed-borne bacterium of rice, Pantoea dispersa BB1, protects rice from the seedling rot caused by the bacterial pathogen Burkholderia glumae. Life 12:791. https://doi.org/10.3390/life12060791
Krishnamoorthy A, Agarwal T, Kotamreddy JNR, Bhattacharya R, Mitra A, Maiti TK, Maiti MK (2020) Impact of seed-transmitted endophytic bacteria on intra- and inter-cultivar plant growth promotion modulated by certain sets of metabolites in rice crop. Microbiol Res 241:126582. https://doi.org/10.1016/j.micres.2020.126582
Kushwaha P, Kashyap PL, Bhardwaj AK, Kuppusamy P, Srivastava AK, Tiwari RK (2020) Bacterial endophyte mediated plant tolerance to salinity: growth responses and mechanisms of action. World J Microbiol Biotechnol 36:26. https://doi.org/10.1007/s11274-020-2804-9
Li HY, Wei DQ, Shen M, Zhou ZP (2012) Endophytes and their role in phytoremediation. Fungal Divers 54:11–18. https://doi.org/10.1007/s13225-012-0165-x
Li JH, Cang ZM, Jiao F, Bai XJ, Zhang D, Zhai RC (2017) Influence of drought stress on photosynthetic characteristics and protective enzymes of potato at seedling stage. J Saudi Soc Agric Sci 16:82–88. https://doi.org/10.1016/j.jssas.2015.03.001
Li J, Zheng BF, Hu RW, Liu YJ, Jing YF, Xiao YH, Sun M, Chen W, Zhou QM (2019) Pseudomonas species isolated from tobacco seed promote root growth and reduce lead contents in Nicotiana tobacum K326. Can J Microbiol 65:214–223. https://doi.org/10.1139/cjm-2018-0434
Li K, Shi C, Wang WQ, Li Y (2020) Seed germination and growth effects of endophyte infection on Melica transsilvanica under Pb stress. J Agric Resour Environ 37:280–286. https://doi.org/10.13254/j.jare.2019.0051
Liang DN, Guo JX, Hou FJ, Bowatte S (2021) High level of conservation and diversity among the endophytic seed bacteriome in eight alpine grassland species growing at the Qinghai Tibetan Plateau. FEMS Microbiol Ecol 97:fiab060. https://doi.org/10.1093/femsec/fiab060
Liu YL, Hou WP, Jin J, Christensen MJ, Gu LJ, Cheng C, Wang JF (2021) Epichloë gansuensis increases the tolerance of Achnatherum inebrians to low-P stress by modulating amino acids metabolism and phosphorus utilization efficiency. J Fungi (Basel) 7:390. https://doi.org/10.3390/jof7050390
Liu D, Cai J, He HJ, Yang SM, Chater C, Yu FQ (2022) Anemochore seeds harbor distinct fungal and bacterial abundance, composition, and functional profiles. J Fungi (basel) 8:89. https://doi.org/10.3390/jof8010089
Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, Dangl JL (2012) Defining the core Arabidopsis thaliana root microbiome. Nature 488:86–90. https://doi.org/10.1038/nature11237
Luo JP, Tao Q, Jupa R, Liu YK, Wu KR, Song YC, Li JX, Huang Y, Zou LY, Liang YC, Li TQ (2019) Role of vertical transmission of shoot endophytes in root-associated microbiome assembly and heavy metal hyperaccumulation in Sedum alfredii. Environ Sci Technol 53:6954–6963. https://doi.org/10.1021/acs.est.9b01093
Malinowski DP, Belesky DP (2000) Adaptations of endophyte-infected cool-season grasses to environmental stresses: mechanisms of drought and mineral stress tolerance. Crop Sci 40:923–940. https://doi.org/10.2135/cropsci2000.404923x
Mastretta C, Taghavi S, Lelie D, Mengoni A, Galardi F, Gonnelli C, Barac T, Boulet J, Weyens N, Vangronsveld J (2009) Endophytic bacteria from seeds of Nicotiana tabacum can reduce cadmium phytotoxicity. Int J Phytoremediation 11:251–267. https://doi.org/10.1080/15226510802432678
Matsumoto H, Fan XY, Wang Y, Kusstatscher P, Duan J, Wu SL, Chen SL, Qiao K, Wang YL, Ma B, Zhu GN, Hashidoko Y, Berg G, Cernava T, Wang MC (2021) Bacterial seed endophyte shapes disease resistance in rice. Nat Plants 7:60–72. https://doi.org/10.1038/s41477-020-00826-5
Mei YZ, Zhu YL, Huang PW, Yang Q, Dai CC (2019) Strategies for gene disruption and expression in filamentous fungi. Appl Microbiol Biotechnol 103:6041–6059. https://doi.org/10.1007/s00253-019-09953-2
Mukherjee A, Singh BK, Verma JP (2020) Harnessing chickpea (Cicer Arietinum L.) seed endophytes for enhancing plant growth attributes and bio-controlling against Fusarium sp. Microbiol Res 237:126469. https://doi.org/10.1016/j.micres.2020.126469
Paithankar JG, Saini S, Dwivedi S, Sharma A, Chowdhuri DK (2021) Heavy metal associated health hazards: an interplay of oxidative stress and signal transduction. Chemosphere 262:128350. https://doi.org/10.1016/j.chemosphere.2020.128350
Pal G, Kumar K, Verma A, Verma SK (2022) Seed inhabiting bacterial endophytes of maize promote seedling establishment and provide protection against fungal disease. Microbiol Res 255:126926. https://doi.org/10.1016/j.micres.2021.126926
Pathak P, Rai VK, Can H, Singh SK, Kumar DK, Bhardwaj N, Roychowdhury R, Azevedo LC, Kaushalendra VK, Kumar A (2022) Plant-endophyte interaction during biotic stress management. Plants (basel) 11:2203. https://doi.org/10.3390/plants11172203
Pitzschke A (2016) Developmental Peculiarities and seed-borne endophytes in quinoa: omnipresent, robust bacilli contribute to plant fitness. Front Microbiol 7:2. https://doi.org/10.3389/fmicb.2016.00002
Rajkumar M, Ae N, Prasad MNV, Freitas H (2010) Potential of siderophore-producing bacteria for improving heavy metal phytoextraction. Trends Biotechnol 28:142–149. https://doi.org/10.1016/j.tibtech.2009.12.002
Roodi D, Millner JP, McGill C, Johnson RD, Jauregui R, Card SD (2020) Methylobacterium a major component of the culturable bacterial endophyte community of wild Brassica seed. PeerJ 8:e9514. https://doi.org/10.7717/peerj.9514
Salazar-Ramírez G, Flores-Vallejo RC, Rivera-Leyva JC, Tovar-Sánchez E, Sánchez-Reyes A, Mena-Portales J, Sánchez-Carbente MR, Gaitán-Rodríguez MF, Batista-García RA, Villarreal ML, Mussali-Galante P, Folch-Mallol JL (2020) Characterization of fungal endophytes isolated from the metal hyperaccumulator plant Vachellia farnesiana growing in mine tailings. Microorganisms 8:226. https://doi.org/10.3390/microorganisms8020226
Salvi P, Mahawar H, Agarrwal R, Kajal GV, Deshmukh R (2022) Advancement in the molecular perspective of plant-endophytic interaction to mitigate drought stress in plants. Front Microbiol 13:981355. https://doi.org/10.3389/fmicb.2022.981355
Sánchez-López A, Pintelon I, Stevens V, Imperato V, Timmermans JP, González-Chávez C, Carrillo-González R, Hamme JV, Vangronsveld J, Thijs S (2018) Seed endophyte microbiome of Crotalaria pumila unpeeled: identification of plant-beneficial methylobacteria. Int J Mol Sci 19:291. https://doi.org/10.3390/ijms19010291
Santoyo G, Moreno-Hagelsieb G, Orozco-Mosqueda MC, Glick BR (2016) Plant growth-promoting bacterial endophytes. Microbiol Res 183:92–99. https://doi.org/10.1016/j.micres.2015.11.008
Shah D, Khan MS, Aziz S, Ali H, Pecoraro L (2021) Molecular and biochemical characterization, antimicrobial activity, stress tolerance, and plant growth-promoting effect of endophytic bacteria isolated from wheat varieties. Microorganisms 10:21. https://doi.org/10.3390/microorganisms10010021
Shahzad R, Waqas M, Khan AL, Asaf S, Khan MA, Kang SM, Yun BW, Lee IJ (2016) Seed-borne endophytic Bacillus amyloliquefaciens RWL-1 produces gibberellins and regulates endogenous phytohormones of Oryza Sativa. Plant Physiol Biochem 106:236–243. https://doi.org/10.1016/j.plaphy.2016.05.006
Shahzad R, Khan AL, Bilal S, Asaf S, Lee IJ (2017) Plant growth-promoting endophytic bacteria versus pathogenic infections: an example of Bacillus amyloliquefaciens RWL-1 and Fusarium oxysporum f. sp. Lycopersici in tomato. PeerJ 5:e3107. https://doi.org/10.7717/peerj.3107
Shahzad R, Khan AL, Bilal S, Asaf S, Lee IJ (2018) What is there in seeds? vertically transmitted endophytic resources for sustainable improvement in plant growth. Front Plant Sci 9:24. https://doi.org/10.3389/fpls.2018.00024
Shahzad R, Bilal S, Imran M, Khan AL, Alosaimi AA, Al-Shwyeh HA, Almahasheer H, Rehman S, Lee IJ (2019) Amelioration of heavy metal stress by endophytic Bacillus amyloliquefaciens RWL-1 in rice by regulating metabolic changes: potential for bacterial bioremediation. Biochem J 476:3385–3400. https://doi.org/10.1042/BCJ20190606
Sharma A, Kaushik N, Sharma A, Bajaj A, Rasane M, Shouche YS, Marzouk T, Djébali N (2021) Screening of tomato seed bacterial endophytes for antifungal activity reveals lipopeptide producing Bacillus siamensis strain NKIT9 as a potential bio-control agent. Front Microbiol 12:609482. https://doi.org/10.3389/fmicb.2021.609482
Siegel MR, Johnson MC, Varney DR, Nesmith WC, Buckner RC, Bush LP, Ii PB, Jones TA, Boling JA (1984) A fungal endophyte in tall fescue [Festuca arundinacea]: incidence and dissemination. Phytopathology 74:932–937
Soldan R, Mapelli F, Crotti E, Schnell S, Daffonchio D, Marasco R, Fusi M, Borin S, Cardinale M (2019) Bacterial endophytes of mangrove propagules elicit early establishment of the natural host and promote growth of cereal crops under salt stress. Microbiol Res 223–225:33–43. https://doi.org/10.1016/j.micres.2019.03.008
Song QY, Li F, Nan ZB, Coulter JA, Wei WJ (2020) Do Epichloë endophytes and their grass symbiosis only produce toxic alkaloids to insects and livestock? J Agric Food Chem 68:1169–1185. https://doi.org/10.1021/acs.jafc.9b06614
Strobel G (2018) The emergence of endophytic microbes and their biological promise. J Fungi 4:57. https://doi.org/10.3390/jof4020057
Thomas P, Sahu PK (2021) Vertical transmission of diverse cultivation-recalcitrant endophytic bacteria elucidated using watermelon seed embryos. Front Microbiol 12:635810. https://doi.org/10.3389/fmicb.2021.635810
Truyens S, Jambon I, Croes S, Janssen J, Weyens N, Mench M, Carleer R, Cuypers A, Vangronsveld J (2014) The effect of long-term Cd and Ni exposure on seed endophytes of Agrostis capillaris and their potential application in phytoremediation of metal-contaminated soils. Int J Phytoremediation 16:643–659. https://doi.org/10.1080/15226514.2013.837027
Truyens S, Weyens N, Cuypers A, Vangronsveld J (2015) Bacterial seed endophytes: genera, vertical transmission and interaction with plants: bacterial seed endophytes. Environ Microbiol Rep 7:40–50. https://doi.org/10.1111/1758-2229.12181
Truyens S, Beckers B, Thijs S, Weyens N, Cuypers A, Vangronsveld J (2016) Cadmium-induced and trans-generational changes in the cultivable and total seed endophytic community of Arabidopsis thaliana. Plant Biol 18:376–381. https://doi.org/10.1111/plb.12415
Tyc O, Putra R, Gols R, Harvey JA, Garbeva P (2019) The ecological role of bacterial seed endophytes associated with wild cabbage in the United Kingdom. Microbiologyopen 9:e00954. https://doi.org/10.1002/mbo3.954
Ullah A, Nisar M, Ali H, Hazrat A, Hayat K, Keerio AA, Ihsan M, Laiq M, Ullah S, Fahad S, Khan A, Khan AH, Akbar A, Yang XY (2019) Drought tolerance improvement in plants: an endophytic bacterial approach. Appl Microbiol Biotechnol 103:7385–7397. https://doi.org/10.1007/s00253-019-10045-4
Verma SK, Kingsley K, Irizarry I, Bergen M, Kharwar RN, White JF (2017) Seed-vectored endophytic bacteria modulate development of rice seedlings. J Appl Microbiol 122:1680–1691. https://doi.org/10.1111/jam.13463
Verma H, Kumar D, Kumar V, Kumari M, Singh SK, Sharma VK, Droby S, Santoyo G, White JF, Kumar A (2021) The potential application of endophytes in management of stress from drought and salinity in crop plants. Microorganisms 9:1729. https://doi.org/10.3390/microorganisms9081729
Walitang DI, Kim K, Madhaiyan M, Kim YK, Kang Y, Sa T (2017) Characterizing endophytic competence and plant growth promotion of bacterial endophytes inhabiting the seed endosphere of Rice. BMC Microbiol 17:209. https://doi.org/10.1186/s12866-017-1117-0
Walitang DI, Kim CG, Kim K, Kang Y, Kim YK, Sa T (2018) The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars. BMC Plant Biol 18:51. https://doi.org/10.1186/s12870-018-1261-1
Wang JF, Hou WP, Christensen MJ, Li XZ, Xia C, Li CJ, Nan ZB (2020) Role of Epichloë endophytes in improving host grass resistance ability and soil properties. J Agric Food Chem 68:6944–6955. https://doi.org/10.1021/acs.jafc.0c01396
Wang ZS, Zhu YQ, Jing RX, Wu XY, Li N, Liu H, Zhang XX, Wang WP, Liu Y (2021) High-throughput sequencing-based analysis of the composition and diversity of endophytic bacterial community in seeds of upland rice. Arch Microbiol 203:609–620. https://doi.org/10.1007/s00203-020-02058-9
Wang T, Wang HJ, Feng K, Li HY, Wang HB (2022) Soil bacteria around a derelict tailings pile with different metal pollution gradients: community composition, metal tolerance and influencing factors. Environ Sci Pollut Res 29:60616–60630. https://doi.org/10.1007/s11356-022-20142-z
White JF, Kingsley KL, Verma SK, Kowalski KP (2018) Rhizophagy cycle: an oxidative process in plants for nutrient extraction from symbiotic microbes. Microorganisms 6:95. https://doi.org/10.3390/microorganisms6030095
White JF, Kingsley KL, Zhang Q, Verma R, Obi N, Dvinskikh S, Elmore MT, Verma SK, Gond SK, Kowalski KP (2019) Review: endophytic microbes and their potential applications in crop management. Pest Manag Sci 75:2558–2565. https://doi.org/10.1002/ps.5527
Yan K, Pei ZH, Meng LN, Zheng Y, Wang L, Feng RZ, Li QZ, Liu Y, Zhao XM, Wei Q, El-Sappah A, Abbas M (2022) Determination of community structure and diversity of seed-vectored endophytic fungi in Alpinia zerumbet. Front Microbiol 13:814864. https://doi.org/10.3389/fmicb.2022.814864
Zhai YR, Chen ZJ, Malik K, Wei XK, Li CJ (2022) Effect of fungal endophyte Epichloë bromicola infection on Cd tolerance in wild barley (Hordeum brevisubulatum). J Fungi 8:366. https://doi.org/10.3390/jof8040366
Zhang YP, Nan ZB (2007) Growth and anti-oxidative systems changes in Elymus dahuricus is affected by Neotyphodium endophyte under contrasting water availability. J Agron Crop Sci 193:377–386. https://doi.org/10.1111/j.1439-037X.2007.00279.x
Zhang W, Mace WJ, Matthew C, Card SD (2019) The impact of endophyte infection, seed aging, and imbibition on selected sugar metabolite concentrations in seed. J Agric Food Chem 67:6921–6929. https://doi.org/10.1021/acs.jafc.9b01618
Zhang ZF, Zhang JC, Xu GP, Zhou LW, Li YQ (2019) Arbuscular mycorrhizal fungi improve the growth and drought tolerance of Zenia insignis seedlings under drought stress. New for 50:593–604. https://doi.org/10.1007/s11056-018-9681-1
Zhang XX, Ma YN, Wang X, Liao KJ, He SW, Zhao X, Guo HB, Zhao DF, Wei HL (2022) Dynamics of rice microbiomes reveal core vertically transmitted seed endophytes. Microbiome 10:216. https://doi.org/10.1186/s40168-022-01422-9
Zhang KY (2020) Isolation of endophytes from Sesbania cannabina and plant growth-promoting characteristics of endophyte. Master’s degree, Shanxi Agricultural University. https://doi.org/10.27285/d.cnki.gsxnu.2020.000633
Zhou JY, Li P, Meng DL, Gu YB, Zheng ZY, Yin HQ, Zhou QM, Li J (2020) Isolation, characterization and inoculation of cd tolerant rice endophytes and their impacts on rice under Cd contaminated environment. Environ Pollut 260:113990. https://doi.org/10.1016/j.envpol.2020.113990
Zhu JK (2016) Abiotic stress signaling and responses in plants. Cell 167:313–324. https://doi.org/10.1016/j.cell.2016.08.029
Zhu LJ, Guan DX, Luo J, Rathinasabapathi B, Ma LQ (2014) Characterization of arsenic-resistant endophytic bacteria from hyperaccumulators Pteris vittata and Pteris multifida. Chemosphere 113:9–16. https://doi.org/10.1016/j.chemosphere.2014.03.081
Acknowledgements
This work was financially supported by the National Natural Science Foundation of China (42267059, 41867026). James White is grateful for the support from the New Jersey Agricultural Experiment Station and the United States Department of Agriculture NIFA Multistate Project W4147.
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Mao, W., Wu, Y., Li, F. et al. Seed Endophytes and Their Roles in Host Plant Stress Resistance. J Soil Sci Plant Nutr 23, 2927–2937 (2023). https://doi.org/10.1007/s42729-023-01279-3
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DOI: https://doi.org/10.1007/s42729-023-01279-3