Skip to main content
Log in

Abstract

The emergence of new viruses into human populations is one of the major challenges in the coming decades. The COVID-19 crisis was an intense reminder. Environmental perspective of SARS-CoV-2 as an emerging viruses is at the focus of many studies. Multiple investigations have shown the presence of the virus in the excrement of an individual who is infected, even during an extended duration of medical intervention. This review aims to understand the destiny of SARS-CoV-2 in various environments with respect to its occurrence, persistence and elimination based on the papers published so far. The SARS-Co2 virus was isolated from contaminated water and rivers, but there is insufficient evidence for viral transmission via water and wastewater. To date, few studies have confirmed the infectivity of SARS-CoV-2 due to cell culture infectivity assay results. Furthermore, some studies have investigated the elimination of SARS-CoV-2 in different stages of wastewater treatment plants (WWTPs). High inactivation in WWTPs can be completed using efficient disinfectants. There have been no recorded instances of the transmission of this virus to individuals through sewage up until now. Nevertheless, research findings have demonstrated the importance of wastewater monitoring in the early detection of the virus variants in communities. There is a need for constant surveillance of emerging viral diseases in all countries around the world. Wastewater surveillance can serve as an initial evaluation of viral infection within a community in the case of SARS-CoV-2.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Aguiar-Oliveira MDL, Campos AR, Matos A, Rigotto C, Sotero-Martins A, Teixeira PF, Siqueira MM (2020) Wastewater-based epidemiology (WBE) and viral detection in polluted surface water: a valuable tool for COVID-19 surveillance - a brief review. Int J Environ Res 17(24):9251

    Google Scholar 

  • Ahmed W, Angel N, Edson J, Bibby K, Bivins A, O’Brien JW, Choi PM, Kitajima M, Simpson SL, Li J, Tscharke B, Verhagen R, Smith WJM, Zaugg J, Dierens L, Hugenholtz P, Thomas KV, Mueller JF (2020) First confirmed detection of SARS-CoV-2 in untreated wastewater in Australia: a proof of concept for the wastewater surveillance of COVID-19 in the community. Sci Total Environ 728:138764

    Article  CAS  Google Scholar 

  • Aquino de Carvalho N, Stachler EN, Cimabue N, Bibby K (2017) Evaluation of Phi6 persistence and suitability as an enveloped virus surrogate. Environ Sci Technol 51(15):8692–8700

    Article  CAS  Google Scholar 

  • Arora S, Bhaukhandi KD, Mishra PK (2020a) Coronavirus lockdown helped the environment to bounce back. Sci Total Environ 742:140573

    Article  CAS  Google Scholar 

  • Arora S, Nag A, Sethi J, Rajvanshi J, Saxena S, Shrivastava SK, Gupta AB (2020b) Sewage surveillance for the presence of SARS-CoV-2 genome as a useful wastewater based epidemiology (WBE) tracking tool in India. Water Sci Technol 82(12):2823–2836

    Article  CAS  Google Scholar 

  • Balboa S, Mauricio-Iglesias M, Rodriguez S, Martínez-Lamas L, Vasallo FJ, Regueiro B, Lema JM (2021) The fate of SARS-COV-2 in WWTPS points out the sludge line as a suitable spot for detection of COVID-19. Sci Total Environ 772:145268

    Article  CAS  Google Scholar 

  • Bhatt A, Arora P, Prajapati SK (2020) Occurrence, fates and potential treatment approaches for removal of viruses from wastewater: a review with emphasis on SARS-CoV-2. J Environ Chem Eng 8(5):104429

    Article  CAS  Google Scholar 

  • Bibby K, Crank K, Greaves J, Li X, Wu Z, Hamza IA, Stachler E (2019) Metagenomics and the development of viral water quality tools. Npj Clean Water 2(1):1–13

    Article  Google Scholar 

  • Bisseux M, Colombet J, Mirand A, Roque-Afonso AM, Abravanel F, Izopet J, Archimbaud C, Peigue-Lafeuille H, Debroas D, Bailly JL, Cécile Henquell C, Henquell C (2018) Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015. Euro Surveill 23(7):17–00237

    Article  Google Scholar 

  • Bivins A, North D, Ahmad A, Ahmed W, Alm E, Been F et al (2020) Wastewater-based epidemiology: global collaborative to maximize contributions in the fight against COVID-19. Environ Sci Technol 54(13):7754–7757

    Article  CAS  Google Scholar 

  • Bogler A, Packman A, Furman A, Gross A, Kushmaro A, Ronen A, Dagot C, Hill C, Vaizel-Ohayon D, Morgenroth E, Bertuzzo E, Wells G, Kiperwas HR, Horn H, Negev I, Zucker I, Bar-Or I, Moran-Gilad J, Balcazar JL, Bibby K, Elimelech M, Weisbrod N, Nir O, Sued O, Gillor O, Alvarez PJ, Crameri S, Arnon S, Walker S, Yaron S, Nguyen TH, Berchenko Y, Hu Y, Ronen Z, Bar-Zeev E (2020) Rethinking wastewater risks and monitoring in light of the COVID-19 pandemic. Nat Sustain 3(12):981–990

    Article  Google Scholar 

  • Bonato G, Dioscoridi L, Mutignani M (2020) Fecal–oral transmission of SARS-COV-2: practical implications. J Gastroenterol 159(4):1621–1622

    CAS  Google Scholar 

  • Boogaerts T, Van den Bogaert S, Van Poelvoorde LA, El Masri D, De Roeck N, Roosens NH, Lesenfants M, Lahousse L, Hoorde KV, van Nuijs ALN, Delputte P (2022) Optimization and application of a multiplex digital PCR assay for the detection of SARS-CoV-2 variants of concern in Belgian influent wastewater. Viruses 14(3):610

    Article  CAS  Google Scholar 

  • Brisebois E, Veillette M, Dion-Dupont V, Lavoie J, Corbeil J, Culley A, Duchaine C (2018) Human viral pathogens are pervasive in wastewater treatment center aerosols. J Environ Sci 67:45–53

    Article  CAS  Google Scholar 

  • Brnić D, Lojkić I, Škoko I, Krešić N, Šimić I, Keros T, Jemeršić L (2022) SARS-CoV-2 circulation in croatian wastewaters and the absence of SARS-CoV-2 in bivalve molluscan shellfish. Environ Res 207:112638

    Article  Google Scholar 

  • Brooks YM, Gryskwicz B, Sheehan S, Piers S, Mahale P, McNeil S, Chase J, Webber D, Borys D, Hilton M, Robinson D, Sears S, Smith E, Lesher EK, Wilson R, Goodwin M, Pardales M (2021) Detection of SARS-CoV-2 in wastewater at residential college, Maine, USA, August–November 2020. Emerg Infect Dis 27(12):3111

    Article  CAS  Google Scholar 

  • Cai J, Sun W, Huang J, Gamber M, Wu J, He G (2020) Indirect virus transmission in cluster of COVID-19 cases, Wenzhou, China, 2020. Emerg Infect Dis 26(6):1343

    Article  CAS  Google Scholar 

  • Canh VD, Torii S, Yasui M, Kyuwa S, Katayama H (2021) Capsid integrity RT-qPCR for the selective detection of intact SARS-CoV-2 in wastewater. Sci Total Environ 791:148342

    Article  CAS  Google Scholar 

  • Carducci A, Federigi I, Liu D, Thompson JR, Verani M (2020) Making waves: coronavirus detection, presence and persistence in the water environment: state of the art and knowledge needs for public health. Water Res 179:115907

    Article  Google Scholar 

  • Caruso BA, Freeman MC (2020) Shared sanitation and the spread of COVID-19: risks and next steps. Lancet Planet Health 4(5):e173

    Article  Google Scholar 

  • Chan KH, Sridhar S, Zhang RR, Chu H, Fung AYF, Chan G, Chan JFW, To KKW, Hung IFN, Cheng VCC, Yuen KY (2020) Factors affecting stability and infectivity of SARS-CoV-2. J Hosp Infect 106(2):226–231

    Article  Google Scholar 

  • Chau TN, Lee KC, Yao H, Tsang TY, Chow TC, Yeung YC, Choi KW, Tso YK, Lau T, Lai ST, Lai CL (2004) SARS-associated viral hepatitis caused by a novel coronavirus: report of three cases. Hepatol 39(2):302–310

    Article  Google Scholar 

  • Chen Y, Chen L, Deng Q, Zhang G, Wu K, Ni L, Yang Y, Liu B, Wang W, Wei C, Yang J, Ye G, Cheng Z (2020) The presence of SARS-CoV-2 RNA in the feces of COVID-19 patients. J Med Virol 92(7):833–840

    Article  CAS  Google Scholar 

  • Chen H (2020) Susceptibility of ferrets, cats, dogs, and different domestic animals to SARS-coronavirus-2. BioRxiv.

  • Cheung KS, Hung IF, Chan PP, Lung KC, Tso E, Liu R, Ng YY, Chu MY, Chung TWH, Tam AR, Yip CCY, Leung KH, Fung AYF, Zhang RR, Lin Y, Cheng HM, Zhang AJX, To KKW, Chan KH, Yuen KY, Leung WK (2020) Gastrointestinal manifestations of SARS-CoV-2 infection and virus load in fecal samples from a Hong Kong cohort: systematic review and meta-analysis. J Gastroenterol 159(1):81–95

    CAS  Google Scholar 

  • Cooper DM, McDonald JE, Malham SK, de Rougemont A, Jones DL (2018) Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters. Sci Total Environ 634:1174–1183

    Article  Google Scholar 

  • Corpuz MVA, Buonerba A, Vigliotta G, Zarra T, Ballesteros JF, Campiglia P, Vincenzo Belgiorno V, Korshin G, Naddeo V (2020) Viruses in wastewater: occurrence, abundance and detection methods. Sci Total Environ 745:140910

    Article  CAS  Google Scholar 

  • Cutrupi F, Cadonna M, Manara S, Foladori P (2021) Surveillance of SARS-CoV-2 in extensive monitoring of municipal wastewater: key issues to yield reliable results. Water Sci Technol 84(12):3508–3514

    Article  CAS  Google Scholar 

  • D’Aoust PM, Mercier E, Montpetit D, Jia JJ, Alexandrov I, Neault N, Baig AT, Mayne J, Zhang X, Alain T, Langlois MA, Servos MR, MacKenzie M, Figeys D, MacKenzie AE, Graber TE, Delatolla R (2021) Quantitative analysis of SARS-CoV-2 RNA from wastewater solids in communities with low COVID-19 incidence and prevalence. Water Res 188:116560

    Article  CAS  Google Scholar 

  • Daughton CG (2020) Wastewater surveillance for population-wide Covid-19: the present and future. Sci Total Environ 736:139631

    Article  CAS  Google Scholar 

  • De Ioris MA, Scarselli A, Ciofi degli Atti ML, Ravà L, Smarrazzo A, Concato C et al (2020) Dynamic viral severe acute respiratory syndrome coronavirus 2 RNA shedding in children: preliminary data and clinical consideration from a Italian regional center. J Pediatric Infect Dis Soc 9(3):366–369

    Article  Google Scholar 

  • De Oliveira LC, Torres-Franco AF, Lopes BC, da Silva Santos BSÁ, Costa EA, Costa MS, Reis MTP, Melo MC, Polizzi RB, Mauro Martins Teixeira MM, Mota CR (2021) Viability of SARS-CoV-2 in river water and wastewater at different temperatures and solids content. Water Res 195:117002

    Article  Google Scholar 

  • Ding Y, He LI, Zhang Q, Huang Z, Che X, Hou J, Wang H, Shen H, Qiu L, Li Z, Geng J, Cai J, Han H, Li X, Kang W, Weng D, Liang P, Jiang S (2004) Organ distribution of severe acute respiratory syndrome (SARS) associated coronavirus (SARS-CoV) in SARS patients: implications for pathogenesis and virus transmission pathways. J Pathol 203(2):622–630

    Article  CAS  Google Scholar 

  • Du Z, Zhu F, Guo F, Yang B, Wang T (2020) Detection of antibodies against SARS-CoV-2 in patients with COVID-19. J Med Virol 92(10):1735

    Article  CAS  Google Scholar 

  • Eftekhari A, Alipour M, Chodari L, Maleki Dizaj S, Ardalan M, Samiei M, Sharifi S, Vahed SZ, Huseynova I, Khalilov R, Ahmadian E, Cucchiarini M (2021) A comprehensive review of detection methods for SARS-CoV-2. Microorganisms 9(2):232

    Article  CAS  Google Scholar 

  • Garrido-Maestu A, Prado M (2022) Naked-eye detection strategies coupled with isothermal nucleic acid amplification techniques for the detection of human pathogens. Compr Rev Food Sci Food Saf 21(2):1913–1939

    Article  Google Scholar 

  • Gavotte L, Gaucherel C, Frutos R (2023) Environmental spillover of emerging viruses: is it true? Environ Res 233(15):116416

    Article  CAS  Google Scholar 

  • Gormley M, Aspray TJ, Kelly DA (2020) COVID-19: mitigating transmission via wastewater plumbing systems. Lancet Glob Health 8(5):e643

    Article  Google Scholar 

  • Greaves J, Fischer RJ, Shaffer M, Bivins A, Holbrook MG, Munster VJ, Bibby K (2022) Sodium hypochlorite disinfection of SARS-CoV-2 spiked in water and municipal wastewater. Sci Total Environ 807:150766

    Article  CAS  Google Scholar 

  • Gu J, Han B, Wang J (2020) COVID-19: gastrointestinal manifestations and potential fecal–oral transmission. Gastroenterolo 158(6):1518–1519

    Article  CAS  Google Scholar 

  • Gudra D, Dejus S, Bartkevics V, Roga A, Kalnina I, Strods M, Rayan A, Kokina K, Zajakina A, Dumpis U, Ikkere LE, Arhipova I, Berzins G, Erglis A, Binde J, Ansonska E, Berzins A, Juhna T, Fridmanis D (2022) Detection of SARS-CoV-2 RNA in wastewater and importance of population size assessment in smaller cities: an exploratory case study from two municipalities in Latvia. Sci Total Environ 823:153775

    Article  CAS  Google Scholar 

  • Guérin-Rechdaoui S, Bize A, Levesque-Ninio C, Janvier A, Lacroix C, Le Brizoual F, Barbier J, Amsaleg CR, Azimi S, Rocher V (2022) Fate of SARS-CoV-2 coronavirus in wastewater treatment sludge, during storage and thermophilic anaerobic digestion. Environ Res 214:114057

    Article  Google Scholar 

  • Gundy PM, Gerba CP, Pepper IL (2009) Survival of coronaviruses in water and wastewater. Food Environ Virol 1(1):10–14

    Article  Google Scholar 

  • Gupta S, Parker J, Smits S, Underwood J, Dolwani S (2020) Persistent viral shedding of SARS-CoV-2 in faeces–a rapid review. Colorectal Dis 22(6):611–620

    Article  CAS  Google Scholar 

  • Gwenzi W (2022) Wastewater, waste, and water-based epidemiology (WWW-BE): a novel hypothesis and decision-support tool to unravel COVID-19 in low-income settings? Sci Total Environ 806:150680

    Article  CAS  Google Scholar 

  • Haramoto E, Kitajima M, Hata A, Torrey JR, Masago Y, Sano D, Katayama H (2018) A review on recent progress in the detection methods and prevalence of human enteric viruses in water. Water Res 135:168–186

    Article  CAS  Google Scholar 

  • Haramoto E, Malla B, Thakali O, Kitajima M (2020) First environmental surveillance for the presence of SARS-CoV-2 RNA in wastewater and river water in Japan. Sci Total Environ 737:140405

    Article  CAS  Google Scholar 

  • He C, Xiong Y, Chen J, Zha C, Zhu X (2003) Photoelectrochemical performance of Ag–TiO2/ITO film and photoelectrocatalytic activity towards the oxidation of organic pollutants. J Photochem Photobiol a: Chem 157(1):71–79

    Article  CAS  Google Scholar 

  • Hillary LS, Malham SK, McDonald JE, Jones DL (2020) Wastewater and public health: the potential of wastewater surveillance for monitoring COVID-19. Curr Opin Environ Sci Health 17:14–20

    Article  Google Scholar 

  • Hokajärvi AM, Rytkönen A, Tiwari A, Kauppinen A, Oikarinen S, Lehto KM, Kankaanpää A, Gunnar T, Al-Hello H, Blomqvist S, Miettinen IT, Savolainen-Kopra C, Pitkänen T (2021) The detection and stability of the SARS-CoV-2 RNA biomarkers in wastewater influent in Helsinki. Finland Sci Total Environ 770:145274

    Article  Google Scholar 

  • Holshue ML, DeBolt C, Lindquist S, Lofy KH, Wiesman J, Bruce H, Spitters C, Ericson K, Wilkerson S, Tural A, Diaz G, Cohn A, Fox L, Patel A, Gerber S, Kim L, Tong S, Lu X, Lindstrom S, Pallansch MA, Weldon WC, Biggs HM, Uyeki TM, Pillai SK (2020) First case of 2019 novel coronavirus in the United States. N Engl J Med 5(10):929–936

    Article  Google Scholar 

  • Hu B, Guo H, Zhou P, Shi ZL (2021) Characteristics of SARS-CoV-2 and COVID-19. Nat Rev Microbiol 19(3):141–154

    Article  CAS  Google Scholar 

  • Iglesias NG, Gebhard LG, Carballeda JM, Aiello I, Recalde E, Terny G, Ambrosolio S, L’Arco G, Konfino J, Brardinelli JI (2021) SARS-CoV-2 surveillance in untreated wastewater: detection of viral RNA in a low-resource community in Buenos Aires, Argentina. Rev Panam Salud Pública 18:45e137

    Google Scholar 

  • Jahn K, Dreifuss D, Topolsky I, Kull A, Ganesanandamoorthy P, Fernandez-Cassi X, Bänziger C, Devaux AJ, Stachler E, Caduff L, Cariti F, Corzón AT, Fuhrmann L, Chen C, Jablonski KP, Nadeau S, Feldkamp M, Beisel C, Aquino C, Stadler T, Ort C, Kohn T, Julian TR, Beerenwinkel N (2022) Early detection and surveillance of SARS-CoV-2 genomic variants in wastewater using COJAC. Nat Microbiol 7:1–10

    Article  Google Scholar 

  • Joshi M, Kumar M, Srivastava V, Kumar D, Rathore D, Pandit R, Joshi CG (2022) Genetic sequencing detected the SARS-CoV-2 delta variant in wastewater a month prior to the first COVID-19 case in Ahmedabad (India). Environ Pollut 310:119757

    Article  CAS  Google Scholar 

  • Joukar F, Yaghubi Kalurazi T, Khoshsorour M, Taramian S, Mahfoozi L, Balou HA, Jafarinezhad A, Pourkazemi A, Hesni E, Asgharnezhad M, Shenagari M, Jahanzad I, Naghipour M, Maroufizadeh S, Mansour-Ghanaei F (2021) Persistence of SARS-CoV-2 RNA in the nasopharyngeal, blood, urine, and stool samples of patients with COVID-19: a hospital-based longitudinal study. Virol J 18(1):1–9

    Article  Google Scholar 

  • Kallem P, Hegab HM, Alsafar H, Hasan SW, Banat F (2023) SARS-CoV-2 detection and inactivation in water and wastewater: review on analytical methods, limitations and future research recommendations. Emerg Microbes & Infect 12:2222850

    Article  Google Scholar 

  • Kampf G, Brüggemann Y, Kaba HEJ, Steinmann J, Pfaender S, Scheithauer S, Steinmann E (2020) Potential sources, modes of transmission and effectiveness of prevention measures against SARS-CoV-2. J Hosp Infect 106(4):678–697

    Article  CAS  Google Scholar 

  • Kilaru P, Hill D, Anderson K, Collins MB, Green H, Kmush BL, Larsen DA (2023) Wastewater surveillance for infectious disease: a systematic review. Am J Epidemiol 192:305–322

    Article  Google Scholar 

  • Kim TD, Unno H (1996) The roles of microbes in the removal and inactivation of viruses in a biological wastewater treatment system. Water Sci Technol 33(10–11):243–250

    Article  CAS  Google Scholar 

  • Kocamemi BA, Kurt H, Sait A, Sarac F, Saatci AM, Pakdemirli B (2020) SARS-CoV-2 detection in Istanbul wastewater treatment plant sludges. MedRxiv. https://doi.org/10.1101/2020.05.12.20099358

    Article  Google Scholar 

  • Kolarević S, Micsinai A, Szántó-Egész R, Lukács A, Kračun-Kolarević M, Lundy L, Kirschner AKT, Farnleitner AH, Djukic A, Čolić J, Nenin T, Sunjog K, Paunović M (2021) Detection of SARS-CoV-2 RNA in the Danube River in Serbia associated with the discharge of untreated wastewaters. Sci Total Environ 783:146967

    Article  Google Scholar 

  • Kumar M, Patel AK, Shah AV, Raval J, Rajpara N, Joshi M, Joshi CG (2020) First proof of the capability of wastewater surveillance for COVID-19 in India through detection of genetic material of SARS-CoV-2. Sci Total Environ 746:141326

    Article  CAS  Google Scholar 

  • Kumar M, Kuroda K, Joshi M, Bhattacharya P, Barcelo D (2021) First comparison of conventional activated sludge versus root-zone treatment for SARS-CoV-2 RNA removal from wastewaters: statistical and temporal significance. J Chem Eng 425:130635

    Article  CAS  Google Scholar 

  • Kuzniewski S (2021) Prevalence, environmental fate, treatment strategies, and future challenges for wastewater contaminated with SARS-CoV-2. Remediation 31(4):97–110

    Article  Google Scholar 

  • La Rosa G, Bonadonna L, Lucentini L, Kenmoe S, Suffredini E (2020) Coronavirus in water environments: occurrence, persistence and concentration methods-a scoping review. Water Res 179:115899

    Article  Google Scholar 

  • Lavania M, Potdar VA, Ranshing S, Vipat V, Saha U, Jadhav SM, Sawant PM, Padbidri V, Chaudhari PA, Patwardhan S (2022) Whole-genome sequencing & mutational analysis of SARS-CoV-2 from patients’ faecal samples reveal the possible role in faecal-oral transmission. Indian J Med Sci 155(1):205–210

    Article  CAS  Google Scholar 

  • Layton BA, Kaya D, Kelly C, Williamson KJ, Alegre D, Bachhuber SM, Banwarth PG, Bethel JW, Carter K, Dalziel BD, Dasenko M, Geniza M, George A, Girard A, Haggerty R, Higley KA, Hynes DM, Lubchenco J, McLaughlin KR, Nieto FJ, Noakes A, Peterson M, Piemonti A, Sanders JL, Tyler BM, Radniecki TS (2022) Evaluation of a wastewater-based epidemiological approach to estimate the prevalence of SARS-CoV-2 infections and the detection of viral variants in disparate Oregon communities at city and neighborhood scales. Environ Health Perspect 130(6):067010

    Article  CAS  Google Scholar 

  • Lee YJ, Kim JH, Choi BS, Choi JH, Jeong YI (2020) Characterization of severe acute respiratory syndrome coronavirus 2 stability in multiple water matrices. J Korean Med Sci 35(36):e330

    Article  Google Scholar 

  • Lenz CA, Antunes M (2021) Coronavirus: exposure and risk to workers health. Living with COVID-19. Jenny Stanford Publishing, Dubai, pp 105–131

    Chapter  Google Scholar 

  • Lescure FX, Bouadma L, Nguyen D, Parisey M, Wicky PH, Behillil S, Gaymard A, Bouscambert-Duchamp M, Donati F, Hingrat QL, Enouf V, Houhou-Fidouh N, Valette M, Mailles A, Lucet JC, Mentre F, Duval X, Descamps D, Malvy D, Timsit JF, Lina B, Van-Der Werf S, Yazdanpanah Y (2020) Clinical and virological data of the first cases of COVID-19 in Europe: a case series. Lancet Infect Dis 20(6):697–706

    Article  CAS  Google Scholar 

  • Li X, Kulandaivelu J, Guo Y, Zhang S, Shi J, O’Brien J, Arora S, Kumar M, Sherchan SP, Honda R, Jackson G, Luby SP, Jiang G (2022) SARS-CoV-2 shedding sources in wastewater and implications for wastewater-based epidemiology. J Hazard Mater 432:128667

    Article  CAS  Google Scholar 

  • Lin X, Glier M, Kuchinsk K, Ross-Van Mierlo T, McVea D, Tyson JR, Prystajecky N, Ziels RM (2021) Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater. Msystems 6(5):e01068-e1121

    Article  CAS  Google Scholar 

  • Ling Y, Xu SB, Lin YX, Tian D, Zhu ZQ, Dai FH, Wu F, Song ZG, Huang W, Chen J, Hu BJ, Wang S, Mao E, Zhu L, Zhang WH, Lu HZ (2020) Persistence and clearance of viral RNA in 2019 novel coronavirus disease rehabilitation patients. Chin Med J 133(09):1039–1043

    Article  CAS  Google Scholar 

  • Lo IL, Lio CF, Cheong HH, Lei CI, Cheong TH, Zhong X, Tian Y, Sin NN (2020) Evaluation of SARS-CoV-2 RNA shedding in clinical specimens and clinical characteristics of 10 patients with COVID-19 in Macau. Int J Biol Sci 16(10):1698

    Article  CAS  Google Scholar 

  • Lu D, Huang Z, Luo J, Zhang X, Sha S (2020) Primary concentration–the critical step in implementing the wastewater based epidemiology for the COVID-19 pandemic: a mini-review. Sci Total Environ 747:141245

    Article  CAS  Google Scholar 

  • Mackay IM, Arden KE (2015) Middle East respiratory syndrome: an emerging coronavirus infection tracked by the crowd. Viru Res 202:60–88

    Article  CAS  Google Scholar 

  • Majumdar M, Wilton T, Hajarha Y, Klapsa D, Martin J (2019) Detection of Enterovirus D68 in wastewater samples from the United Kingdom during outbreaks reported globally between 2015 and 2018. BioRxiv. https://doi.org/10.3390/v14010143

    Article  Google Scholar 

  • Majumder A, Gupta AK, Ghosal PS, Varma M (2021) A review on hospital wastewater treatment: a special emphasis on occurrence and removal of pharmaceutically active compounds, resistant microorganisms, and SARS-CoV-2. J Environ Chem Eng 9(2):104812

    Article  CAS  Google Scholar 

  • Mallapaty S (2020) How sewage could reveal true scale of coronavirus outbreak. Nature 580(7802):176–177

    Article  CAS  Google Scholar 

  • Milani SJ, Nabi Bidhendi G (2022) A review on the potential of common disinfection processes for the removal of virus from wastewater. Int J Environ Res 16:9

    Article  Google Scholar 

  • Miura T, Lhomme S, Le Saux JC, Le Mehaute P, Guillois Y, Couturier E, Izopet J, Abranavel F, Le Guyader FS (2016) Detection of hepatitis E virus in sewage after an outbreak on a French island. Food Environ Virol 8(3):194–199

    Article  Google Scholar 

  • Mohapatra S, Menon NG, Mohapatra G, Pisharody L, Pattnaik A, Menon NG, Bhukya PL, Srivastava M, Singh M, Muneesh Kumar Barman MK, Karina Yew-Hoong Gin KYH, Mukherji S (2021) The novel SARS-CoV-2 pandemic: possible environmental transmission, detection, persistence and fate during wastewater and water treatment. Sci Total Environ 765:142746

    Article  CAS  Google Scholar 

  • Montenegro-Ayo R, Barrios AC, Mondal I, Bhagat K, Morales-Gomero JC, Abbaszadegan M, Westerhoff P, Perreault F, Garcia-Segura S (2020) Portable point-of-use photoelectrocatalytic device provides rapid water disinfection. Sci Total Environ 737:140044

    Article  CAS  Google Scholar 

  • Nasir AM, Jaafar J, Aziz F, Yusof N, Salleh WNW, Ismail AF, Aziz M (2020) A review on floating nanocomposite photocatalyst: fabrication and applications for wastewater treatment. J Water Process Eng 36:101300

    Article  Google Scholar 

  • Nasseri S, Yavarian J, Baghani AN, Azad TM, Nejati A, Nabizadeh R, Hadi M, Jandaghi NZS, Vakili B, Vaghefi SKA, Baghban M, Yousefi S, Nazmara S, Alimohammadi M (2021) The presence of SARS-CoV-2 in raw and treated wastewater in 3 cities of Iran: Tehran, Qom and Anzali during coronavirus disease 2019 (COVID-19) outbreak. Environ Health Sci Eng 19(1):573–584

    Article  CAS  Google Scholar 

  • Nieto-Juarez JI, Pierzchła K, Sienkiewicz A, Kohn T (2010) Inactivation of MS2 coliphage in Fenton and Fenton-like systems: role of transition metals, hydrogen peroxide and sunlight. Environ Sci Technol 44(9):3351–3356

    Article  CAS  Google Scholar 

  • Oloye FF, Xie Y, Asadi M, Cantin J, Challis JK, Brinkmann M, McPhedran KN, Kristian K, Keller M, Sadowski M, Jones PD, Landgraff C, Mangat C, Fuzzen M, Servos MR, Giesy JP (2022) Rapid transition between SARS-CoV-2 variants of concern delta and omicron detected by monitoring municipal wastewater from three Canadian cities. Sci Total Environ 841:156741

    Article  CAS  Google Scholar 

  • Pan Y, Zhang D, Yang P, Poon LL, Wang Q (2020) Viral load of SARS-CoV-2 in clinical samples. Lancet Infect Dis 20(4):411–412

    Article  CAS  Google Scholar 

  • Parida VK, Saidulu D, Bhatnagar A, Gupta AK, Afzal MS (2023) A critical assessment of SARS-CoV-2 in aqueous environment: Existence, detection, survival, wastewater-based surveillance, inactivation methods, and effective management of COVID-19. Chemosphere 327:138503

    Article  CAS  Google Scholar 

  • Park M, Won J, Choi BY, Lee CJ (2020) Optimization of primer sets and detection protocols for SARS-CoV-2 of coronavirus disease 2019 (COVID-19) using PCR and real-time PCR. Exp Mol Med 52(6):963–977

    Article  CAS  Google Scholar 

  • Pechlivanis N, Tsagiopoulou M, Maniou MC, Togkousidis A, Mouchtaropoulou E, Chassalevris T, Chaintoutis SC, Petala M, Kostoglou M, Karapantsios T, Laidou S, Vlachonikola E, Chatzidimitriou A, Papadopoulos A, Papaioannou N, Dovas CI, Argiriou A, Psomopoulos F (2022) Detecting SARS-CoV-2 lineages and mutational load in municipal wastewater and a use-case in the metropolitan area of Thessaloniki Greece. Sci Rep 12(1):1–12

    Article  Google Scholar 

  • Peng L, Liu J, Xu W, Luo Q, Chen D, Lei Z, Huang LX, Deng K, Lin B, Gao Z (2020) SARS-CoV-2 can be detected in urine, blood, anal swabs, and oropharyngeal swabs specimens. J Med Virol 92(9):1676–1680

    Article  CAS  Google Scholar 

  • Rabenau HF, Cinatl J, Morgenstern B, Bauer G, Preiser W, Doerr HW (2005) Stability and inactivation of SARS coronavirus. Med Microbiol Immunol 194(1):1–6

    Article  CAS  Google Scholar 

  • Randazzo W, Truchado P, Cuevas-Ferrando E, Simón P, Allende A, Sánchez G (2020) SARS-CoV-2 RNA in wastewater anticipated COVID-19 occurrence in a low prevalence area. Water Res 181:115942

    Article  CAS  Google Scholar 

  • Riddell S, Goldie S, Hill A, Eagles D, Drew TW (2020) The effect of temperature on persistence of SARS-CoV-2 on common surfaces. Virol J 17(1):1–7

    Article  Google Scholar 

  • Rimoldi SG, Stefani F, Gigantiello A, Polesello S, Comandatore F, Mileto D, Maresca M, Longobardi C, Mancon A, Romeri F, Pagani C, Cappelli F, Roscioli C, Moja L, Gismondo MR, Salerno F (2020) Presence and infectivity of SARS-CoV-2 virus in wastewaters and rivers. Sci Total Environ 744:140911

    Article  CAS  Google Scholar 

  • Robinson CA, Hsieh HY, Hsu SY, Wang Y, Salcedo BT, Belenchia A, Klutts J, Zemmer S, Reynolds M, Semkiw E, Foley T, Wan X, Wieberg CG, Wenzel J, Lin CH, Johnson MC (2022) Defining biological and biophysical properties of SARS-CoV-2 genetic material in wastewater. Sci Total Environ 807:150786

    Article  CAS  Google Scholar 

  • Robles-Romero JM, Conde-Guillén G, Safont-Montes JC, García-Padilla FM, Romero-Martín M (2022) Behaviour of aerosols and their role in the transmission of SARS-CoV-2; a scoping review. Rev Med Virol 32(3):e2297

    Article  CAS  Google Scholar 

  • Saawarn B, Hait S (2021) Occurrence, fate and removal of SARS-CoV-2 in wastewater: current knowledge and future perspectives. J Environ Chem Eng 9(1):104870

    Article  CAS  Google Scholar 

  • Sala-Comorera L, Reynolds LJ, Martin NA, O’Sullivan JJ, Meijer WG, Fletcher NF (2021) Decay of infectious SARS-CoV-2 and surrogates in aquatic environments. Water Res 201:117090

    Article  CAS  Google Scholar 

  • Sangkham S (2021) A review on detection of SARS-CoV-2 RNA in wastewater in light of the current knowledge of treatment process for removal of viral fragments. J Environ Manage 299:113563

    Article  CAS  Google Scholar 

  • Serra-Compte A, González S, Arnaldos M, Berlendis S, Courtois S, Loret JF (2021) Elimination of SARS-CoV-2 along wastewater and sludge treatment processes. Water Res 202:117435

    Article  CAS  Google Scholar 

  • Sherchan SP, Shahin S, Ward LM, Tandukar S, Aw TG, Schmitz B, Ahmed W, Kitajima M (2020) First detection of SARS-CoV-2 RNA in wastewater in North America: a study in Louisiana, USA. Sci Total Environ 743:140621

    Article  CAS  Google Scholar 

  • Silva CS, Tryndyak V, Camacho L, Orloff MS, Porter A, Garner K, Mullis L, Azevedo M (2022) Temporal dynamics of SARS-CoV-2 genome and detection of variants of concern in wastewater influent from two metropolitan areas in Arkansas. Sci Total Environ 849:157546

    Article  CAS  Google Scholar 

  • Sinclair RG, Choi CY, Riley MR, Gerba CP (2008) Pathogen surveillance through monitoring of sewer systems. Adv Appl Microbiol 65:249

    Article  CAS  Google Scholar 

  • Smyth DS, Trujillo M, Gregory DA, Cheung K, Gao A, Graham M, Guan Y, Guldenpfennig C, Hoxie I, Kannoly S, Kubota N, Lyddon TD, Markman M, Rushford C, San KM, Sompanya G, Spagnolo F, Suarez R, Teixeiro E, Daniels M, Johnson MC, Dennehy JJ (2022) Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater. Nat Commun 13(1):1–9

    Google Scholar 

  • Sodhi KK, Singh CK (2023) A systematic review on the occurrence, fate, and remediation of SARS-CoV-2 in wastewater. Int J Environ Sci Technol 20:8073–8086

    Article  CAS  Google Scholar 

  • St Hilaire BG, Durand NC, Mitra N, Pulido SG, Mahajan R, Blackburn A, Colaric ZL, Theisen JWM, Weisz D, Dudchenko O, Gnirke A, Rao S, Kaur P, Aiden EL, Aiden AP (2020) A rapid, low cost, and highly sensitive SARS-CoV-2 diagnostic based on whole genome sequencing. BioRxiv.

  • Su TH, Kao JH (2020) The clinical manifestations and management of COVID-19-related liver injury. J Formos Med Assoc 119(6):1016

    Article  CAS  Google Scholar 

  • Su X, Yuan J, Dong W, Sun F, Wang M, Dong Z, Li W, Du C (2021) Organic and nitrogenous pollutants removal paths in vegetation activated sludge process (V-ASP) for decentralized wastewater treatment by using stable isotope technique. Bioresour Technol 330:124959

    Article  CAS  Google Scholar 

  • Sun S, Han J (2020) Open defecation and squat toilets, an overlooked risk of fecal transmission of COVID-19 and other pathogens in developing communities. Environ Chem Lett 19(2):787–795

    Article  CAS  Google Scholar 

  • Sutton M, Radniecki TS, Kaya D, Alegre D, Geniza M, Girard AM, Carter K, Dasenko M, Sanders JL, Cieslak PR, Kelly C, Tyler BM (2022) Detection of SARS-CoV-2 B. 1.351 (beta) variant through wastewater surveillance before case detection in a community, Oregon, USA. Emerg Infect Dis 28(6):1101

    Article  CAS  Google Scholar 

  • Tan LF (2020) Preventing the transmission of COVID-19 amongst healthcare workers. J Hosp Infect 105(2):364–365

    Article  CAS  Google Scholar 

  • Tandukar S, Sthapit N, Thakali O, Malla B, Sherchan SP, Shakya BM, Shrestha LP, Sherchand JB, Joshi DR, Lama B, Haramoto E (2022) Detection of SARS-CoV-2 RNA in wastewater, river water, and hospital wastewater of Nepal. Sci Total Environ 824:153816

    Article  CAS  Google Scholar 

  • Tiwari A, Lipponen A, Hokajärvi AM, Luomala O, Sarekoski A, Rytkönen A, Österlund P, Al-Hello H, Juutinen A, Miettinen IT, Carita Savolainen-Kopra C, Pitkänen T (2022) Detection and quantification of SARS-CoV-2 RNA in wastewater influent in relation to reported COVID-19 incidence in Finland. Water Res 215:118220

    Article  CAS  Google Scholar 

  • Tomasino MP, Semedo M, Moreira PV, Ferraz E, Rocha A, Carvalho MF, Magalhães C, Mucha AP (2021) SARS-CoV-2 RNA detected in urban wastewater from Porto, Portugal: method optimization and continuous 25-week monitoring. Sci Total Environ 792:148467

    Article  CAS  Google Scholar 

  • Toribio-Avedillo D, Gómez-Gómez C, Sala-Comorera L, Rodríguez-Rubio L, Carcereny A, GarcíaPedemonte D, Pintó RM, Guix S, Galofré B, Bosch A, Merino S, Muniesa M (2023) Monitoring influenza and respiratory syncytial virus in wastewater. Beyond COVID-19. Sci Total Environ 892:164495

    Article  CAS  Google Scholar 

  • Vo V, Tillett RL, Papp K, Shen S, Gu R, Gorzalski A, Siao D, Markland R, Chang CL, Baker H, Chen J, Schiller M, Betancourt WQ, Buttery E, Pandori M, Picker MA, Gerrity D, Oh EC (2022) Use of wastewater surveillance for early detection of alpha and epsilon SARS-CoV-2 variants of concern and estimation of overall COVID-19 infection burden. Sci Total Environ 835:155410

    Article  CAS  Google Scholar 

  • Wang XW, Li JS, Guo TK, Zhen B, Kong QX, Yi B, Li Z, Song N, Jin M, Xiao WJ, Zhu XM, Gu CQ, Yin J, Wei W, Yao W, Liu C, Li JF, Ou G, Wang MN, Fang TY, Wang GJ, Qiu YH, Wu HH, Fu-Huan Chao FH, Li JW (2005) Concentration and detection of SARS coronavirus in sewage from Xiao Tang Shan Hospital and the 309th Hospital. J Virol Methods 128(1–2):156–161

    Article  CAS  Google Scholar 

  • Wang X, Zhou Y, Jiang N, Zhou Q, Ma WL (2020) Persistence of intestinal SARS-CoV-2 infection in patients with COVID-19 leads to re-admission after pneumonia resolved. Int J Infect Dis 95:433–435

    Article  CAS  Google Scholar 

  • Westhaus S, Weber FA, Schiwy S, Linnemann V, Brinkmann M, Widera M, Greve C, Janke A, Hollert H, Wintgens T, Ciesek S (2021) Detection of SARS-CoV-2 in raw and treated wastewater in Germany–suitability for COVID-19 surveillance and potential transmission risks. Sci Total Environ 751:141750

    Article  CAS  Google Scholar 

  • Wigginton KR, Ye Y, Ellenberg RM (2015) Emerging investigators series: the source and fate of pandemic viruses in the urban water cycle. Environ Sci Water Res Technol 1(6):735–746

    Article  Google Scholar 

  • Wilhelm A, Schoth J, Meinert-Berning C, Agrawal S, Bastian D, Orschler L, Ciesek S, Teichgräber B, Wintgens T, Lackner S, Weber FA, Widera M (2022) Wastewater surveillance allows early detection of SARS-CoV-2 omicron in North Rhine-Westphalia Germany. Sci Total Environ 846:157375

    Article  CAS  Google Scholar 

  • Wolf GK, Glueck T, Huebner J, Muenchhoff M, Hoffmann D, French LE, Keppler OT, OT, Protzer U, (2020) Clinical and epidemiological features of a family cluster of symptomatic and asymptomatic severe acute respiratory syndrome coronavirus 2 infection. J Pediatric Infect Dis Soc 9(3):362–365

    Article  CAS  Google Scholar 

  • Wolf M, Hughes B, Duong D, Chan-Herur V, Wigginton KR, White BJ, Boehm AB (2022) Detection of SARS-CoV-2 variants mu, beta, gamma, lambda, delta, alpha, and omicron in wastewater settled solids using mutation-specific assays is associated with regional detection of variants in clinical samples. Appl Environ Microbiol 88(8):e00045-e122

    Google Scholar 

  • Wurtzer S, Marechal V, Mouchel JM, Moulin L (2020) Time course quantitative detection of SARS-CoV-2 in Parisian wastewaters correlates with COVID-19 confirmed cases. MedRxiv 4:2020

    Google Scholar 

  • Wurtzer S, Waldman P, Ferrier-Rembert A, Frenois-Veyrat G, Mouchel JM, Boni M, Maday Y, Marechal V, Moulin L (2021) Several forms of SARS-CoV-2 RNA can be detected in wastewaters: implication for wastewater-based epidemiology and risk assessment. Water Res 198:117183

    Article  CAS  Google Scholar 

  • Xiao F, Tang M, Zheng X, Liu Y, Li X, Shan H (2020) Evidence for gastrointestinal infection of SARS-CoV-2. Gastroenterol 158(6):1831–1833

    Article  CAS  Google Scholar 

  • Xu X, Zhang J, Zhu L, Huang Q (2021) Transmission of SARS-CoV-2 indoor and outdoor environments. J Atmos 12(12):1640

    CAS  Google Scholar 

  • Yanaç K, Adegoke A, Wang L, Uyaguari M, Yuan Q (2022) Detection of SARS-CoV-2 RNA throughout wastewater treatment plants and a modeling approach to understand COVID-19 infection dynamics in Winnipeg. Canada Sci Total Environ 825:153906

    Article  Google Scholar 

  • Yang S, Dong Q, Li S, Cheng Z, Kang X, Ren D, Xu C, Zhou X, Liang P, Sun L, Zhao J, Jiao Y, Han T, Liu Y, Qian Y, Liu Y, Huang X, Qu J (2022) Persistence of SARS-CoV-2 RNA in wastewater after the end of the COVID-19 epidemics. J Hazard Mater 429:128358

    Article  CAS  Google Scholar 

  • Zhang H, Kang Z, Gong H, Xu D, Wang J, Li Z, Cui X, Xiao J, Meng T, Zhou W, Liu J, Xu H (2020) The digestive system is a potential route of 2019-nCov infection: a bioinformatics analysis based on single-cell transcriptomes. BioRxiv. https://doi.org/10.1136/gutjnl-2020-320953

    Article  Google Scholar 

  • Zhang D, Duran SSF, Lim WYS, Tan CKI, Cheong WCD, Suwardi A, Loh XJ (2022) SARS-CoV-2 in wastewater: from detection to evaluation. Mater Today Adv 13:100211

    Article  CAS  Google Scholar 

Download references

Acknowledgements

The authors highly acknowledges the Vice Chancellor office of Alzahra University, and Department of Microbiology, Faculty of Biological sciences of Alzahra University.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to P. Mohammadi.

Ethics declarations

Conflict of interest

No conflicts of interest.

Ethical approval

The study does not relate to animals or humans.

Additional information

Editorial responsibility: Samareh Mirkia.

Rights and permissions

Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Mobarak Qamsari, E., Mohammadi, P. Destiny of emerging viruses: a systematic review. Int. J. Environ. Sci. Technol. (2024). https://doi.org/10.1007/s13762-024-05560-5

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s13762-024-05560-5

Keywords

Navigation