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A colour image segmentation method and its application to medical images

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Abstract

In this paper, we propose a segmentation model using an anisotropic multi-well potential-based nonlinear transient PDE for colour images. A channel-wise greyscale classification approach is devised for colour image segmentation. The time evolution of the PDE model is carried out by the implicit–explicit convexity splitting approach. Further, we consider the fractional version of the time-discretised model by replacing the Laplacian with its fractional counterpart. The spatial terms are approximated by the Fourier basis under the pseudo-spectral method. The convergence and the stability of the numerical scheme are elaborated. Both models (fractional and non-fractional) are tested on some synthetic images and few real-world standard test images. The results on synthetic images are compared with those from the literature using Dice similarity index, Jaccard similarity index and BF score. Later the method is successfully applied on several medical images to classify the same.

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Availability of data and materials

Most of the test images we have used are available in public domain. The medical images will be made available on request.

References

  1. Mumford, D., Shah, J.: Optimal approximation by piecewise smooth functions and associated variational problems. Commun. Pure Appl. Math. 42, 577–685 (1989)

    Article  MathSciNet  Google Scholar 

  2. Bar, L., Chan, T.F., Chung, G., Jung, M., Kiryati, N., Mohieddine, R., Sochen, N., Vese, L.A.: Mumford and Shah model and its applications to image segmentation and image restoration. Handbook of Mathematical Methods in Imaging, pp. 1539–1598. Springer, Berlin (2015)

  3. Storath, M., Weinmann, A.: Fast partitioning of vector-valued images. SIAM J. Imaging Sci. 7(3), 1826–1852 (2014)

    Article  MathSciNet  Google Scholar 

  4. Cai, X., Chan, R., Nikolova, M., Zeng, T.: A three-stage approach for segmenting degraded color images: smoothing, lifting and thresholding (SLaT). J. Sci. Comput. (2017). https://doi.org/10.1007/s10915-017-0402-2

    Article  MathSciNet  Google Scholar 

  5. Burger, M., He, L., Schönlieb, C.: Cahn–Hilliard inpainting and a generalization for gray value images. SIAM J. Imaging Sci. 2(4), 1129–1167 (2009)

    Article  MathSciNet  Google Scholar 

  6. Bertozzi, A., Esedoglu, S., Gillette, A.: Inpainting of binary images using the Cahn–Hilliard equation. IEEE Trans. Image Proc. 16(1), 285–291 (2007)

    Article  ADS  MathSciNet  Google Scholar 

  7. Halim, A., Kumar, B.V.R.: An anisotropic PDE model for image inpainting. Comput. Math. Appl. 79, 2701–2721 (2020). https://doi.org/10.1016/j.camwa.2019.12.002

    Article  MathSciNet  Google Scholar 

  8. Jung, Y.M., Kang, S.H., Shen’, J.: Multiphase image segmentation via Modica–Mortola phase transition. SIAM J. Appl. Math. 67(5), 1213–1232 (2007)

    Article  MathSciNet  Google Scholar 

  9. Beneš, M., Chalupecký, V., Mikula, K.: Geometrical image segmentation by the Allen–Cahn equation. Appl. Numer. Math. 51, 187–205 (2004)

    Article  MathSciNet  Google Scholar 

  10. Li, Y., Kim, J.: Multiphase image segmentation using a phase-field model. Comput. Math. Appl. 62, 737–745 (2011)

    Article  MathSciNet  Google Scholar 

  11. Samson, C., Feraud, L.B., Aubert, G., Zerubia, J.: A variational model for image classification and restoration. IEEE Trans. Pattern Anal. Mach. Intell. 22, 460–472 (2000)

    Article  Google Scholar 

  12. Rathish Kumar, B.V., Halim, A., Vijayakrishna, R.: Higher order PDE based model for segmenting noisy image. IET Image Process. 14(11), 2597–2609 (2020)

    Article  Google Scholar 

  13. Cai, X., Chan, R., Zeng, T.: A two-stage image segmentation method using a convex variant of the Mumford–Shah model and thresholding. SIAM J. Imaging Sci. 6(1), 368–390 (2013)

    Article  MathSciNet  Google Scholar 

  14. Pock, T., Chambolle, A., Cremers, D., Bischof, H.: A convex relaxation approach for computing minimal partitions. In: IEEE Conference on Computer Vision and Pattern Recognition, pp. 810–817 (2009)

  15. Chan, T.F., Sandberg, B.Y., Vese, L.A.: Active contours without edges for vector-valued images. J. Vis. Commun. Image Represent. 11(2), 130–141 (2000)

    Article  Google Scholar 

  16. Paschos, G.: Perceptually uniform color spaces for color texture analysis: an empirical evaluation. IEEE Trans. Image Process. 10(6), 932–937 (2001)

  17. Rotaru, C., Graf, T., Zhang, J.: Color image segmentation in HSI space for automotive applications. J. Real-Time Image Process. 3(4), 311–322 (2008)

    Article  Google Scholar 

  18. Benninghoff, H., Garcke, H.: Efficient image segmentation and restoration using parametric curve evolution with junctions and topology changes. SIAM J. Imaging Sci. 7(3), 1451–1483 (2014)

    Article  MathSciNet  Google Scholar 

  19. Bosch, J., Stoll, M.: A fractional inpainting model based on the vector-valued Cahn–Hilliard equation. SIAM J. Imag. Sci. 8(4), 2352–2382 (2015)

    Article  MathSciNet  Google Scholar 

  20. Vijayakrishna R.: A unified model of Cahn–Hilliard grayscale inpainting and multiphase classification. Ph.D thesis, Indian Institute of Technology Kanpur, India (2015)

  21. Schindelin, J., Arganda-Carreras, I., Frise, E., et al.: Fiji: an open-source platform for biological-image analysis. Nat. Methods 9(7), 676–682 (2012)

    Article  CAS  PubMed  Google Scholar 

  22. Csurka, G., Larlus, D., Perronnin, F.: What is a good evaluation measure for semantic segmentation? In: Proceedings of the British Machine Vision Conference, pp. 32.1–32.11 (2013)

  23. Xu, J., Janowczyk, A., Chandran, S., Madabhushi, A.: A weighted mean shift, normalized cuts initialized color gradient based geodesic active contour model: applications to histopathology image segmentation, progress in biomedical optics and imaging—proceedings of SPIE. https://doi.org/10.1117/12.845602

  24. Janowczyk, A., Chandran, S., Singh, R., Sasaroli, D., Coukos, G., Feldman, M. D., Madabhushi, A.: Hierarchical normalized cuts: unsupervised segmentation of vascular biomarkers from ovarian cancer tissue microarrays. In: MICCAI, pp. 230–238 (2009)

  25. Acha, B., Serrano, C., Acha, J.I., Roa, L.: Segmentation and classification of burn images by color and texture information. J. Biomed. Opt. 10(3), 0340141–03401411 (2005)

    Article  Google Scholar 

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Funding

The authors acknowledge the funding received under the SPARC project MHRD/SPARC/2018-2019/7/SL(IN) of MHRD and MATRICS project no. Mtr/2018/000899, SERB, Govt. of India.

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All the authors are involved in the project mentioned in the funding details. The first author, AH, prepared the initial draft of the manuscript, and then, it was corrected and modified by the authors BVRK, SKP and AN. The medical images are provided, and results were interpreted by WS, CKA, AN, SKP and BVRK. All authors reviewed the manuscript.

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Correspondence to B. V. Rathish Kumar.

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Halim, A., Kumar, B.V.R., Niranjan, A. et al. A colour image segmentation method and its application to medical images. SIViP 18, 1635–1648 (2024). https://doi.org/10.1007/s11760-023-02817-3

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