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Genetic characterization of the complete genome of an Aleutian mink disease virus isolated in north China

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Abstract

The genome of a highly pathogenic strain of Aleutian disease mink virus (AMDV-BJ) isolated from a domestic farm in North China has been determined and compared with other strains. Alignment analysis of the major structural protein VP2 revealed that AMDV-BJ is unique among 17 other AMDV strains. Compared with the nonpathogenic strain ADV-G, the 3′ end Y-shaped hairpin was highly conserved, while a 4-base deletion in the 5′ U-shaped terminal palindrome resulted in a different unpaired “bubble” group near the NS1-binding region of the 5′ end hairpin which may affect replication efficiency in vivo. We also performed a protein analysis of the NS1, NS2, and new-confirmed NS3 of AMDV-BJ with some related AMDV DNA sequence published, providing information on evolution of AMDV genes. This study shows a useful method to obtain the full-length genome of AMDV and some other parvoviruses.

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Acknowledgments

This work was supported by 863 Project (2011AA10A213).

Funding

This study was funded by 863 Project (2011AA10A213).

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Authors and Affiliations

  1. State Key Laboratory of Agrobiotechnology, Department of Biochemistry and Molecular Biology, College of Biological Sciences, China Agricultural University, No. 2 Yuanmingyuan West Road, Haidian District, Beijing, 100193, China

    Ji Xi, Jigui Wang, Yongle Yu, Xiaomei Zhang, Yaping Mao, Qiang Hou & Weiquan Liu

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  1. Ji Xi
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  2. Jigui Wang
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Xi, J., Wang, J., Yu, Y. et al. Genetic characterization of the complete genome of an Aleutian mink disease virus isolated in north China. Virus Genes 52, 463–473 (2016). https://doi.org/10.1007/s11262-016-1320-3

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