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ABL1 tyrosine kinase domain mutations in chronic myeloid leukemia treatment resistance

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Abstract

The development of mutations in the BCR-ABL1 fusion gene transcript causes resistance to tyrosine kinase inhibitors (TKIs) based therapy in chronic myeloid leukemia (CML). Thereby, screening for BCR-ABL1 mutations is advised especially in patients undergoing poor response to treatment. In the current study the authors investigated 43 patients with CML that failed or had suboptimal response to TKIs treatment. Blood samples were collected from patients that were treated with TKIs. The analysis of genetic mutations was performed using a semi-nested PCR assay, followed by Sanger sequencing. The analysis revealed 15 mutations (32.55%): 14 point mutations and an exon 7 deletion. In roughly 30% of cases, mutations in the BCR-ABL1 fusion gene are common causes for treatment resistance.

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References

  1. Chan LC, Karhi KK, Rayter SI, Heisterkamp N, Eridani S, Powle R, Lawler SD, Groffen J, Foulkes JG, Greaves MF, Wiedemann LM et al (1987) A novel abl protein expressed in Philadelphia chromosome positive acute lymphoblastic leukaemia positive acute lymphoblastic leukaemia. Nature 325(6105):635

    Article  CAS  PubMed  Google Scholar 

  2. Rowley JD (1973) A new consistent chromosomal abnormality in chronic myelogenous leukaemia identified by quinacrine fluorescence and Giemsa staining. Nature 243(5405):290

    Article  CAS  PubMed  Google Scholar 

  3. Secker-Walker LM, Craig JM, Hawkins JM, Hoffbrand AV (1991) Philadelphia positive acute lymphoblastic leukemia in adults: age distribution, BCR breakpoint and prognostic significance. Leukemia 5(3):196–199

    CAS  PubMed  Google Scholar 

  4. Sawyers CL (1999) Chronic myeloid leukemia. N Engl J Med 340(17):1330–1340

    Article  CAS  PubMed  Google Scholar 

  5. Ren R (2005) Mechanisms of BCR–ABL in the pathogenesis of chronic myelogenous leukaemia. Nat Rev Cancer 5(3):172

    Article  CAS  PubMed  Google Scholar 

  6. Baccarani M, Saglio G, Goldman J, Hochhaus A, Simonsson B, Appelbaum F, Apperley J, Cervantes F, Cortes J, Deininger M, Gratwohl A et al (2006) Evolving concepts in the management of chronic myeloid leukemia: recommendations from an expert panel on behalf of the European LeukemiaNet. Blood 108(6):1809–1820

    Article  CAS  PubMed  Google Scholar 

  7. Jabbour E, Kantarjian H, Jones D, Talpaz M, Bekele N, O’brien S, Zhou X, Luthra R, Garcia-Manero G, Giles F, Rios MB et al (2006) Frequency and clinical significance of BCR-ABL mutations in patients with chronic myeloid leukemia treated with imatinib mesylate. Leukemia 20(10):1767

    Article  CAS  PubMed  Google Scholar 

  8. Fielding AK (2011) Current treatment of Philadelphia chromosome–positive acute lymphoblastic leukemia. ASH Education Program Book 2011(1):231–237

    Google Scholar 

  9. Chalandon Y, Thomas X, Hayette S, Cayuela JM, Abbal C, Huguet F, Raffoux E, Leguay T, Rousselot P, Lepretre S, Escoffre-Barbe M et al (2015) Randomized study of reduced-intensity chemotherapy combined with imatinib in adults with Ph-positive acute lymphoblastic leukemia. Blood 125(24):3711–3719

    Article  CAS  PubMed  Google Scholar 

  10. Branford S, Hughes T (2006) Detection of BCR-ABL mutations and resistance to imatinib mesylate. Methods Mol Med 125:93–106

    CAS  PubMed  Google Scholar 

  11. Corbin AS, La Rosée P, Stoffregen EP, Druker BJ, Deininger MW (2003) Several Bcr-Abl kinase domain mutants associated with imatinib mesylate resistance remain sensitive to imatinib. Blood 101(11):4611–4614

    Article  CAS  PubMed  Google Scholar 

  12. Jones D, Kamel-Reid S, Bahler D, Dong H, Elenitoba-Johnson K, Press R, Quigley N, Rothberg P, Sabath D, Viswanatha D, Weck K et al (2009) Laboratory practice guidelines for detecting and reporting BCR-ABL drug resistance mutations in chronic myelogenous leukemia and acute lymphoblastic leukemia: a report of the Association for Molecular Pathology. J Mol Diagn 11(1):4–11

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Soverini S, Colarossi S, Gnani A, Rosti G, Castagnetti F, Poerio A, Iacobucci I, Amabile M, Abruzzese E, Orlandi E, Radaelli F et al (2006) Contribution of ABL kinase domain mutations to imatinib resistance in different subsets of Philadelphia-positive patients: by the GIMEMA Working Party on Chronic Myeloid Leukemia. Clin Cancer Res 12(24):7374–7379

    Article  CAS  PubMed  Google Scholar 

  14. Shah NP, Nicoll JM, Nagar B, Gorre ME, Paquette RL, Kuriyan J, Sawyers CL (2002) Multiple BCR-ABL kinase domain mutations confer polyclonal resistance to the tyrosine kinase inhibitor imatinib (STI571) in chronic phase and blast crisis chronic myeloid leukemia. Cancer Cell 2(2):117–125

    Article  CAS  PubMed  Google Scholar 

  15. Azam M, Latek RR, Daley GQ (2003) Mechanisms of autoinhibition and STI-571/imatinib resistance revealed by mutagenesis of BCR-ABL. Cell 112(6):831–843

    Article  CAS  PubMed  Google Scholar 

  16. Stagno F, Stella S, Spitaleri A, Pennisi MS, Di Raimondo F, Vigneri P (2016) Imatinib mesylate in chronic myeloid leukemia: frontline treatment and long-term outcomes. Expert Rev Anticancer Ther 16(3):273–278

    Article  CAS  PubMed  Google Scholar 

  17. Lovera S, Morando M, Pucheta-Martinez E, Martinez-Torrecuadrada JL, Saladino G, Gervasio FL (2015) Towards a molecular understanding of the link between imatinib resistance and kinase conformational dynamics. PLoS Comput Biol 11(11):e1004578

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Vaidya S, Vundinti BR, Shanmukhaiah C, Chakrabarti P, Ghosh K (2015) Evolution of BCR/ABL gene mutation in CML is time dependent and dependent on the pressure exerted by tyrosine kinase inhibitor. PLoS ONE 10(1):e0114828

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Kimura S, Ando T, Kojima K (2014) BCR-ABL point mutations and TKI treatment in CML patients. J Hematol Transf 2:1022–1033

    Google Scholar 

  20. Branford S, Rudzki Z, Walsh S, Parkinson I, Grigg A, Szer J, Taylor K, Herrmann R, Seymour JF, Arthur C, Joske D et al (2003) Detection of BCR-ABL mutations in patients with CML treated with imatinib is virtually always accompanied by clinical resistance, and mutations in the ATP phosphate-binding loop (P-loop) are associated with a poor prognosis. Blood 102(1):276–283

    Article  CAS  PubMed  Google Scholar 

  21. Griswold IJ, MacPartlin M, Bumm T, Goss VL, O’Hare T, Lee KA, Corbin AS, Stoffregen EP, Smith C, Johnson K, Moseson EM et al (2006) Kinase domain mutants of Bcr-Abl exhibit altered transformation potency, kinase activity, and substrate utilization, irrespective of sensitivity to imatinib. Mol Cell Biol 26(16):6082–6093

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Cortes JE, Kim DW, Pinilla-Ibarz JL, Le Coutre P, Paquette R, Chuah C, Nicolini FE, Apperley JF, Khoury HJ, Talpaz M, DiPersio J et al (2013) A phase 2 trial of ponatinib in Philadelphia chromosome–positive leukemias. N Engl J Med 369(19):1783–1796

    Article  CAS  PubMed  Google Scholar 

  23. Zabriskie MS, Eide CA, Tantravahi SK, Vellore NA, Estrada J, Nicolini FE, Khoury HJ, Larson RA, Konopleva M, Cortes JE, Kantarjian H et al (2014) BCR-ABL1 compound mutations combining key kinase domain positions confer clinical resistance to ponatinib in Ph chromosome-positive leukemia. Cancer Cell 26(3):428–442

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Deininger MW, Hodgson JG, Shah NP, Cortes JE, Kim DW, Nicolini FE, Talpaz M, Baccarani M, Müller MC, Li J, Parker WT et al (2016) Compound mutations in BCR-ABL1 are not major drivers of primary or secondary resistance to ponatinib in CP-CML patients. Blood 127(6):703–712

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  25. Baccarani M, Deininger MW, Rosti G, Hochhaus A, Soverini S, Apperley JF, Cervantes F, Clark RE, Cortes JE, Guilhot F, Hjorth-Hansen H (2013) European LeukemiaNet recommendations for the management of chronic myeloid leukemia: 2013. Blood 122(6):872–884

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Steegmann JL, Baccarani M, Breccia M, Casado LF, Garcia-Gutierrez V, Hochhaus A, Kim DW, Kim TD, Khoury HJ, Le Coutre P, Mayer J et al (2016) European LeukemiaNet recommendations for the management and avoidance of adverse events of treatment in chronic myeloid leukaemia. Leukemia 30(8):1648

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Soverini S, Vitale A, Poerio A, Gnani A, Colarossi S, Iacobucci I, Cimino G, Elia L, Lonetti A, Vignetti M, Paolini S (2011) Philadelphia-positive acute lymphoblastic leukemia patients already harbor BCR-ABL kinase domain mutations at low levels at the time of diagnosis. Haematologica 96(4):552–557

    Article  CAS  PubMed  Google Scholar 

  28. Iqbal Z (2014) A comprehensive analysis of breakpoint cluster region-abelson fusion oncogene splice variants in chronic myeloid leukemia and their correlation with disease biology. Indian J Hum Genet 20(1):64

    Article  PubMed  PubMed Central  Google Scholar 

  29. Chandrasekhar C, Kumar PS, Sarma PV (2019) Novel mutations in the kinase domain of BCR-ABL gene causing imatinib resistance in chronic myeloid leukemia patients. Sci Rep 9(1):2412

    Article  PubMed  PubMed Central  Google Scholar 

  30. Langabeer SE, McCarron SL, Kelly J, Krawczyk J, McPherson S, Perera K, Murphy PT (2012) Chronic myeloid leukemia with e19a2 BCR-ABL1 transcripts and marked thrombocytosis: the role of molecular monitoring. Case Rep Hematol 2012:458716

    PubMed  PubMed Central  Google Scholar 

  31. Baccarani M, Cortes J, Pane F, Niederwieser D, Saglio G, Apperley J, Cervantes F, Deininger M, Gratwohl A, Guilhot F, Hochhaus A (2009) Chronic myeloid leukemia: an update of concepts and management recommendations of European LeukemiaNet. J Clin Oncol 27(35):6041

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  32. Swerdlow SH (2008) WHO classification of tumours of haematopoietic and lymphoid tissues. In: WHO classification of tumours 22008. WHO, Geneva, p 439

  33. Branford S, Rudzki Z, Walsh S, Grigg A, Arthur C, Taylor K, Herrmann R, Lynch KP, Hughes TP et al (2002) High frequency of point mutations clustered within the adenosine triphosphate–binding region of BCR/ABL in patients with chronic myeloid leukemia or Ph-positive acute lymphoblastic leukemia who develop imatinib (STI571) resistance. Blood 99(9):3472–3475

    Article  CAS  PubMed  Google Scholar 

  34. Lewandowski K, Warzocha K, Hellmann A, Skotnicki A, Prejzner W, Foryciarz K, Sacha T, Gniot M, Majewski M, Solarska I, Nowak G et al (2009) Frequency of BCR-ABL gene mutations in Polish patients with chronic myeloid leukemia treated with imatinib. Polskie Archiwum Medycyny Wewnętrznej 119(12):789–794

    CAS  PubMed  Google Scholar 

  35. Hanfstein B, Müller MC, Kreil S, Ernst T, Schenk T, Lorentz C, Schwindel U, Leitner A, Hehlmann R, Hochhaus A et al (2011) Dynamics of mutant BCR-ABL-positive clones after cessation of tyrosine kinase inhibitor therapy. Haematologica 96(3):360–366

    Article  CAS  PubMed  Google Scholar 

  36. Soverini S, Hochhaus A, Nicolini FE, Gruber F, Lange T, Saglio G, Pane F, Müller MC, Ernst T, Rosti G, Porkka K et al (2011) BCR-ABL kinase domain mutation analysis in chronic myeloid leukemia patients treated with tyrosine kinase inhibitors: recommendations from an expert panel on behalf of European LeukemiaNet. Blood 118(5):1208–1215

    Article  CAS  PubMed  Google Scholar 

  37. Baccarani M, Pileri S, Steegmann JL, Muller M, Soverini S, Dreyling M, ESMO Guidelines Working Group (2012) Chronic myeloid leukemia: ESMO Clinical Practice Guidelines for diagnosis, treatment and follow-up. Ann Oncol 23(suppl_7):vii72–vii77

  38. Zhou T, Commodore L, Huang WS, Wang Y, Thomas M, Keats J, Xu Q, Rivera VM, Shakespeare WC, Clackson T, Dalgarno DC et al (2011) Structural mechanism of the pan-BCR-ABL inhibitor ponatinib (AP24534): lessons for overcoming kinase inhibitor resistance. Chem Biol Drug Des 77(1):1–1

    Article  CAS  PubMed  Google Scholar 

  39. Redaelli S, Piazza R, Rostagno R, Magistroni V, Perini P, Marega M, Gambacorti-Passerini C, Boschelli F et al (2009) Activity of bosutinib, dasatinib, and nilotinib against 18 imatinib-resistant BCR/ABL mutants. J Clin Oncol 27(3):469–471

    Article  CAS  PubMed  Google Scholar 

  40. O’Hare T, Eide CA, Deininger MW (2007) Bcr-Abl kinase domain mutations, drug resistance, and the road to a cure for chronic myeloid leukemia. Blood 110(7):2242–2249

    Article  CAS  PubMed  Google Scholar 

  41. Burke AC, Swords RT, Kelly K, Giles FJ (2011) Current status of agents active against the T315I chronic myeloid leukemia phenotype. Expert Opin Emerg Drugs 16(1):85–103

    Article  CAS  PubMed  Google Scholar 

  42. Hughes TP, Branford S (2009) Monitoring disease response to tyrosine kinase inhibitor therapy in CML. In: ASH Education Program Book 2009(1), pp 477–487

  43. La Rosée P, Deininger MW (2010) Resistance to imatinib: mutations and beyond. Semin Hematol 47(4):335–343

    Article  CAS  PubMed  Google Scholar 

  44. Shah NP, Skaggs BJ, Branford S, Hughes TP, Nicoll JM, Paquette RL, Sawyers CL (2007) Sequential ABL kinase inhibitor therapy selects for compound drug-resistant BCR-ABL mutations with altered oncogenic potency. J Clin Invest 117(9):2562–2569

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  45. Soverini S, Gnani A, Colarossi S, Castagnetti F, Abruzzese E, Paolini S, Merante S, Orlandi E, de Matteis S, Gozzini A, Iacobucci I et al (2009) Philadelphia-positive patients who already harbor imatinib-resistant Bcr-Abl kinase domain mutations have a higher likelihood of developing additional mutations associated with resistance to second-or third-line tyrosine kinase inhibitors. Blood 114(10):2168–2171

    Article  CAS  PubMed  Google Scholar 

  46. Jabbour E, Kantarjian H (2014) Chronic myeloid leukemia: 2014 update on diagnosis, monitoring, and management. Am J Hematol 89(5):547–556

    Article  CAS  PubMed  Google Scholar 

  47. Osborn M, Hughes T (2010) Managing imatinib resistance in chronic myeloid leukaemia. Curr Opin Hematol 17(2):97–103

    Article  CAS  PubMed  Google Scholar 

  48. O’Hare T, Walters DK, Stoffregen EP, Jia T, Manley PW, Mestan J, Cowan-Jacob SW, Lee FY, Heinrich MC, Deininger MW, Druker BJ et al (2005) In vitro activity of Bcr-Abl inhibitors AMN107 and BMS-354825 against clinically relevant imatinib-resistant Abl kinase domain mutants. Cancer Res 65(11):4500–4505

    Article  PubMed  Google Scholar 

  49. Shen X, Zhang M, Shen Y, Shi W, Liu W, Wei W (2015) Nilotinib rapidly reverses breakpoint cluster region-Abelson oncogene fusion gene and M244 V mutations in a patient with chronic myelogenous leukemia: a case report. Exp Ther Med 10(4):1479–1482

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  50. Sherbenou DW, Hantschel O, Turaga L, Kaupe I, Willis S, Bumm T, Press RD, Superti-Furga G, Druker BJ, Deininger MW et al (2008) Characterization of BCR-ABL deletion mutants from patients with chronic myeloid leukemia. Leukemia 22(6):1184

    Article  CAS  PubMed  Google Scholar 

  51. Curvo RP, Zalcberg IR, Scholl V, Pires V, Moellmann-Coelho A, Moreira MA (2008) A recurrent splicing variant without c-ABL Exon 7 in Imatinib-resistant patients. Leuk Res 32(3):508–510

    Article  CAS  PubMed  Google Scholar 

  52. Gaillard JB, Arnould C, Bravo S, Donadio D, Exbrayat C, Jourdan E, Reboul D, Chiesa J, Lavabre-Bertrand T et al (2010) Exon 7 deletion in the bcr-abl gene is frequent in chronic myeloid leukemia patients and is not correlated with resistance against imatinib. Mol Cancer Ther 9(11):3083–3089

    Article  CAS  PubMed  Google Scholar 

  53. Meggyesi N, Kalmár L, Fekete S, Masszi T, Tordai A, Andrikovics H (2012) Characterization of ABL exon 7 deletion by molecular genetic and bioinformatic methods reveals no association with imatinib resistance in chronic myeloid leukemia. Med Oncol 29(3):2136–2142

    Article  CAS  PubMed  Google Scholar 

  54. Patkar N, Ghodke K, Joshi S, Chaudhary S, Mascerhenas R, Dusseja S, Kabre S et al (2016) Characteristics of BCR-ABL kinase domain mutations in chronic myeloid leukemia from India: not just missense mutations but insertions and deletions are also associated with TKI resistance. Leuk Lymphoma 57(11):2653–2660

    Article  CAS  PubMed  Google Scholar 

  55. Alikian M, Gerrard G, Subramanian PG, Mudge K, Foskett P, Khorashad JS, Rezvani K et al (2012) BCR-ABL1 kinase domain mutations: methodology and clinical evaluation. Am J Hematol 87(3):298–304

    Article  CAS  PubMed  Google Scholar 

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Correspondence to Irina Cezara Vacarean-Trandafir.

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Vacarean-Trandafir, I.C., Ivanov, I.C., Dragos, L.M. et al. ABL1 tyrosine kinase domain mutations in chronic myeloid leukemia treatment resistance. Mol Biol Rep 46, 3747–3754 (2019). https://doi.org/10.1007/s11033-019-04816-5

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