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Genomic regions associated with resistance to anthracnose in the Guatemalan climbing bean (Phaseolus vulgaris L.) germplasm collection

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Abstract

The anthracnose disease caused by the fungal pathogen Colletotrichum lindemuthianum (Sacc & Magnus) Briosi & Cavara, is a disease that causes significant seed yield losses in common bean (Phaseolus vulgaris L.) worldwide. A germplasm collection of climbing beans from Guatemala was evaluated in the greenhouse for their reaction to race 73 of C. lindemuthianum that occurs in many growing areas worldwide. This germplasm mostly represents the so-called race Guatemala. Approximately 10% of 369 climbing bean accessions showed no symptoms (score of 1 on a 1–9 anthracnose severity visual score scale). Genome wide association study (GWAS) results using 78,754 SNP markers indicated that genomic regions with resistance to race 73 of C. lindemuthianum exist in Pv04 and Pv07, which have been previously reported. We also report four candidate genes located on Pv04 and Pv07 suspected to be responsible for anthracnose resistance, based on their proximity to significantly associated SNP markers.

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Acknowledgements

Feed the Future, USAID, Legume Innovation Lab. Genetic Improvement of Middle-American Climbing Beans in Guatemala (SO1.A1); Dry bean breeding program, Dry bean pathology lab and Dry bean genomics lab, NDSU, Fargo, North Dakota; USDA-ARS Soybean Genomics and Improvement Laboratory Beltsville Agricultural Research Center, Maryland; ICTA, Dry bean breeding program, Guatemala. Special thanks to, Robin Lamppa, Rian Lee, Katelynn Walter, Ali Soltani, Luz Montejo, Julio Villatoro, Angela Miranda, Jessica Moscoso, Daniel Coc, Tomás Yancós, Elmer Estrada, Erick William De León, Leonel Esteban Monterroso and Eunice Barrera.

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Authors and Affiliations

  1. Instituto de Ciencia y Tecnología Agrícolas (ICTA), Villa Nueva, Guatemala

    C. R. Maldonado-Mota & M. G. Tobar-Piñón

  2. Department of Plant Sciences, North Dakota State University, Fargo, ND, USA

    P. E. McClean & J. M. Osorno

  3. Department of Plant Pathology, North Dakota State University, Fargo, ND, USA

    J. Pasche & R. Lamppa

  4. Department of Plant Biology, Michigan State University, East Lansing, MI, USA

    S. M. Moghaddam

  5. Trait and Technology, Hazera Seeds B.V., Made, The Netherlands

    S. Schröder

  6. USDA-ARS Soybean Genomics and Improvement Laboratory, United States Department of Agriculture research Service, Beltsville Agricultural Research Center, Beltsville, MD, USA

    M. A. Pastor-Corrales

  7. USDA-APHIS Plant Germplasm Quarantine Program, Beltsville Agricultural Research Center, Building 580, Beltsville, MD, USA

    O. P. Hurtado-Gonzales

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  1. C. R. Maldonado-Mota
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Maldonado-Mota, C.R., Moghaddam, S.M., Schröder, S. et al. Genomic regions associated with resistance to anthracnose in the Guatemalan climbing bean (Phaseolus vulgaris L.) germplasm collection. Genet Resour Crop Evol 68, 1073–1083 (2021). https://doi.org/10.1007/s10722-020-01050-y

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