Abstract
Rice is the most staple food consuming in China. During the past six decades, a large number of indica inbred rice cultivars have been developed. However, seldom studies have focused on evaluating the dynamic changes of grain quality improvement among the major cultivars. Our study evaluated the genetic improvement of 12 quality traits in indica inbred rice cultivars developed in rice breeding programs in South China during 1956–2020. The results indicated that significant improvement had been gained for the appearance quality, cooking and eating quality in the breeding program since the 1990s, while slight genetic improvement was attained before 1990. Among all the 12 traits, MGL (Milled Grain Length), LWR (Length Rate Ratio), GC (Gel Consistency), and ASV (Alkali Spreading Value) were significantly increased among these different cultivars; MGW (Milled Grain Width), CGR (Chalky Grain Rate), CA (Chalkiness Area), and AC (Amylase Content) showed a tremendously decreased trend from last thirty years. However, the other four traits, such as BRR (Brown Rice Rate), MRR (Milled Rice Rate), HMRR (Head Milled Rice Rate), and PC (Protein Content) showed little improvement during the breeding processes in these cultivars. The results also suggested that selecting a slender grain shape would be beneficial for breeding high quality indica rice. We also discussed that improving milling quality, especially HMRR of the high-quality cultivars and nutrition quality for special consumer groups as an meaningful direction for rice breeding.
Similar content being viewed by others
Data availability
The data presented in this study are available from the corresponding author upon request.
References
Association GS (2019) GDSMM: T/GDSMM001–2019, Product standard of Guangdong Simiao rice. China (in Chinese)
Balindong JL, Ward RM, Liu L, Rose TJ, Pallas LA, Ovenden BW, Snell PJ, Waters DLE (2018) Rice grain protein composition influences instrumental measures of rice cooking and eating quality. J Cereal Sci 79:35–42. https://doi.org/10.1016/j.jcs.2017.09.008
Chen S, Yang Y, Shi W, Ji Q, He F, Zhang Z, Cheng Z, Liu X, Xu M (2008) Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance. Plant Cell 20(7):1850–1861. https://doi.org/10.1105/tpc.108.058917
Chen Y, Wang M, Ouwerkerk PBF (2012) Molecular and environmental factors determining grain quality in rice. Food Energy Secur 1(2):111–132. https://doi.org/10.1002/fes3.11
Collaboration GBDCKD (2020) Global, regional, and national burden of chronic kidney disease, 1990–2017: a systematic analysis for the Global Burden of Disease Study 2017. Lancet 395(10225):709–733. https://doi.org/10.1016/S0140-6736(20)30045-3
Cox TS, Shogren MD, Sears RG, Martin TJ, Bolte LC (1989) Genetic improvement in milling and baking quality of hard red winter wheat cultivars, 1919 to 1988. Crop Sci 29(3):626–631. https://doi.org/10.2135/cropsci1989.0011183X002900030015x
Das P, Adak S, LahiriMajumder A (2020) Genetic manipulation for improved nutritional quality in rice. Front Genet 11:776. https://doi.org/10.3389/fgene.2020.00776
Deng N, Grassini P, Yang H, Huang J, Cassman KG, Peng S (2019) Closing yield gaps for rice self-sufficiency in China. Nat Commun 10(1):1725. https://doi.org/10.1038/s41467-019-09447-9
Eckardt NA (2000) Sequencing the rice genome. Plant Cell 12(11):2011–2017. https://doi.org/10.1105/tpc.12.11.2011
Fiaz S, Ahmad S, Noor MA, Wang X, Younas A, Riaz A, Riaz A, Ali F (2019) Applications of the CRISPR/Cas9 system for rice grain quality improvement: perspectives and opportunities. Int J Mol Sci. https://doi.org/10.3390/ijms20040888
Fischer RA (2015) Definitions and determination of crop yield, yield gaps, and of rates of change. Field Crop Res 182:9–18. https://doi.org/10.1016/j.fcr.2014.12.006
Fitzgerald MA, McCouch SR, Hall RD (2009) Not just a grain of rice: the quest for quality. Trends Plant Sci 14(3):133–139. https://doi.org/10.1016/j.tplants.2008.12.004
Gao F, Ma D, Yin G, Rasheed A, Dong Y, Xiao Y, Xia X, Wu X, He Z (2017) Genetic progress in grain yield and physiological traits in chinese wheat cultivars of southern yellow and Huai Valley since 1950. Crop Sci 57(2):760–773. https://doi.org/10.2135/cropsci2016.05.0362
He XY, Liu ZX, Liu CG (2020) Sixty years’conventional rice breeding of guangdong academy of agricultural sciences: achievements and prospects. Guangdong Agri Sci 47:1–8. https://doi.org/10.16768/j.issn.1004-874X.2020.11.001
Huang K, Wang D, Duan P, Zhang B, Xu R, Li N, Li Y (2017) WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice. Plant J 91(5):849–860. https://doi.org/10.1111/tpj.13613
Kharabian-Masouleh A, Waters DL, Reinke RF, Ward R, Henry RJ (2012) SNP in starch biosynthesis genes associated with nutritional and functional properties of rice. Sci Rep 2:557. https://doi.org/10.1038/srep00557
Laidig F, Piepho HP, Rentel D, Drobek T, Meyer U, Huesken A (2017) Breeding progress, environmental variation and correlation of winter wheat yield and quality traits in German official variety trials and on-farm during 1983–2014. Theor Appl Genet 130(1):223–245. https://doi.org/10.1007/s00122-016-2810-3
Lenaerts B, Collard BCY, Demont M (2019) Review: improving global food security through accelerated plant breeding. Plant Sci 287:110207. https://doi.org/10.1016/j.plantsci.2019.110207
Li Y, Fan C, Xing Y, Yun P, Luo L, Yan B, Peng B, Xie W, Wang G, Li X, Xiao J, Xu C, He Y (2014) Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice. Nat Genet 46(4):398–404. https://doi.org/10.1038/ng.2923
Liu C-G, Zhang G-Q (2010) Genetic diversity revealed by ssr markers and temporal trends of major commercial inbred indica rice cultivars in South China in 1949–2005. Acta Agron Sin 36(11):1843–1852. https://doi.org/10.1016/s1875-2780(09)60082-1
Liu CG, Zhou HQ, Feng DJ, Zheng HB (2010) Genetic improvement of yield and plant-type traits of inbred indica rice cultivars in South China. Acta Agr Sin 43:3901–3911 ((in Chinese))
Liu J, Chen J, Zheng X, Wu F, Lin Q, Heng Y, Tian P, Cheng Z, Yu X, Zhou K, Zhang X, Guo X, Wang J, Wang H, Wan J (2017) GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice. Nat Plants 3:17043. https://doi.org/10.1038/nplants.2017.43
Ma X, Zhu Q, Chen Y, Liu YG (2016) CRISPR/Cas9 platforms for genome editing in plants: developments and applications. Mol Plant 9(7):961–974. https://doi.org/10.1016/j.molp.2016.04.009
Martin M, Fitzgerald MA (2002) Proteins in rice grains influence cooking properties! J Cereal Sci 36(3):285–294. https://doi.org/10.1006/jcrs.2001.0465
Meng X, Hu X, Liu Q, Song X, Gao C, Li J, Wang K (2018) Robust genome editing of CRISPR-Cas9 at NAG PAMs in rice. Sci China Life Sci 61(1):122–125. https://doi.org/10.1007/s11427-017-9247-9
Mochizuki T, Hara S (2000) Usefulness of the low protein rice on the diet therapy in patients with chronic renal failure. Nihon Jinzo Gakkai Shi 42(1):24–29 ((in Japanese))
National Bureau of Statistics of China (2020). China Statistics Press, Beijing, China. National Standard of People’s Republic of China GB/T17891–2017, Quality rice (2017). (in Chinese)
Nehe A, Akin B, Sanal T, Evlice AK, Unsal R, Dincer N, Demir L, Geren H, Sevim I, Orhan S, Yaktubay S, Ezici A, Guzman C, Morgounov A (2019) Genotype x environment interaction and genetic gain for grain yield and grain quality traits in Turkish spring wheat released between 1964 and 2010. PLoS ONE 14(7):e0219432. https://doi.org/10.1371/journal.pone.0219432
Qian Q, Guo L, Smith SM, Li J (2016) Breeding high-yield superior quality hybrid super rice by rational design. Natl Sci Rev 3(3):283–294. https://doi.org/10.1093/nsr/nww006
Qiu YX, Fu CX, Comes HP (2011) Plant molecular phylogeography in China and adjacent regions: tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora. Mol Phylogenet Evol 59(1):225–244. https://doi.org/10.1016/j.ympev.2011.01.012
Rayee R, Xuan TD, Khanh TD, Tran H-D, Kifayatullah K (2021) Efficacy of irrigation interval after anthesis on grain quality, alkali digestion, and gel consistency of rice. Agriculture. https://doi.org/10.3390/agriculture11040325
Saeedi P, Petersohn I, Salpea P, Malanda B, Karuranga S, Unwin N, Colagiuri S, Guariguata L, Motala AA, Ogurtsova K, Shaw JE, Bright D, Williams R, Committee IDFDA (2019) Global and regional diabetes prevalence estimates for 2019 and projections for 2030 and 2045: results from the international diabetes federation diabetes atlas, 9(th) edition. Diabetes Res Clin Pract 157:107843. https://doi.org/10.1016/j.diabres.2019.107843
Shi J, Wu M, Quan M (2017) Effects of protein oxidation on gelatinization characteristics during rice storage. J Cereal Sci 75:228–233. https://doi.org/10.1016/j.jcs.2017.04.013
Sun S, Wang L, Mao H, Shao L, Li X, Xiao J, Ouyang Y, Zhang Q (2018) A G-protein pathway determines grain size in rice. Nat Commun 9(1):851. https://doi.org/10.1038/s41467-018-03141-y
Tan YF, Li JX, Yu SB, Xing YZ, Xu CG, Zhang Q (1999) The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid, Shanyou 63. Theor Appl Genet 99(3–4):642–648. https://doi.org/10.1007/s001220051279
Tang ZYJ, Wang X, Cai K, Li X (2012) Temporal change in diversity of grain quality traits in major conventional rice varieties in Guangdong Province, China. Chinese J Rice Sci 26:669–676. https://doi.org/10.3969/j.issn.1001-7216.2012.06.006 (in Chinese)
Tian Z, Qian Q, Liu Q, Yan M, Liu X, Yan C, Liu G, Gao Z, Tang S, Zeng D, Wang Y, Yu J, Gu M, Li J (2009) Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities. Proc Natl Acad Sci U S A 106(51):21760–21765. https://doi.org/10.1073/pnas.0912396106
Wang S, Li S, Liu Q, Wu K, Zhang J, Wang S, Wang Y, Chen X, Zhang Y, Gao C, Wang F, Huang H, Fu X (2015a) The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat Genet 47(8):949–954. https://doi.org/10.1038/ng.3352
Wang S, Wu K, Yuan Q, Liu X, Liu Z, Lin X, Zeng R, Zhu H, Dong G, Qian Q, Zhang G, Fu X (2012) Control of grain size, shape and quality by OsSPL16 in rice. Nat Genet 44(8):950–954. https://doi.org/10.1038/ng.2327
Wang Y, Li J (2011) Branching in rice. Curr Opin Plant Biol 14(1):94–99. https://doi.org/10.1016/j.pbi.2010.11.002
Wang Y, Xiong G, Hu J, Jiang L, Yu H, Xu J, Fang Y, Zeng L, Xu E, Xu J, Ye W, Meng X, Liu R, Chen H, Jing Y, Wang Y, Zhu X, Li J, Qian Q (2015b) Copy number variation at the GL7 locus contributes to grain size diversity in rice. Nat Genet 47(8):944–948. https://doi.org/10.1038/ng.3346
Wu B, Hu W, Xing YZ (2018) The history and prospect of rice genetic breeding in China. Yi Chuan 40(10):841–857. https://doi.org/10.16288/j.yczz.18-213 ((inChinese))
Wu S, Lu Y-C, McMurtrey JE, Weesies G, Devine TE, Foster GR (2004) Soil conservation benefits of large biomass soybean (LBS) for increasing crop residue cover. J Sustain Agric 24(1):107–128. https://doi.org/10.1300/J064v24n01_09
Xie LH, Luo J, Tang SQ, Chen N, Jiao GA, Shao GN, Wei XJ, Hu PS (2013) Proteins affect rice eating quality properties and its mechanism. Chinese J Rice Sci 27:91–96. https://doi.org/10.3969/j.issn.1001-7216.2013.01.013 ((inChinese))
Xu Y, Lu Y, Xie C, Gao S, Wan J, Prasanna BM (2012) Whole-genome strategies for marker-assisted plant breeding. Mol Breed 29(4):833–854. https://doi.org/10.1007/s11032-012-9699-6
Zeng D, Tian Z, Rao Y, Dong G, Yang Y, Huang L, Leng Y, Xu J, Sun C, Zhang G, Hu J, Zhu L, Gao Z, Hu X, Guo L, Xiong G, Wang Y, Li J, Qian Q (2017) Rational design of high-yield and superior-quality rice. Nat Plants 3:17031. https://doi.org/10.1038/nplants.2017.31
Zhang Y, Massel K, Godwin ID, Gao C (2018) Applications and potential of genome editing in crop improvement. Genome Biol 19(1):210. https://doi.org/10.1186/s13059-018-1586-y
Zheng C, Guo ZX, Yuan YZ, Guo Y, Chai M, Liang XY, Bi RT (2019) Spatial and temporal changes of farmland soil acidification and their influencing factors in different regions of Guangdong Province, China. Ying Yong Sheng Tai Xue Bao 30(2):593–601. https://doi.org/10.13287/j.1001-9332.201902.030(inChinese)
Zhou H, Wang L, Liu G, Meng X, Jing Y, Shu X, Kong X, Sun J, Yu H, Smith SM, Wu D, Li J (2016) Critical roles of soluble starch synthase SSIIIa and granule-bound starch synthase Waxy in synthesizing resistant starch in rice. Proc Natl Acad Sci U S A 113(45):12844–12849. https://doi.org/10.1073/pnas.1615104113
Zhu L, Wu G, Cheng L, Zhang H, Wang L, Qian H, Qi X (2020) Investigation on molecular and morphology changes of protein and starch in rice kernel during cooking. Food Chem 316:126262. https://doi.org/10.1016/j.foodchem.2020.126262
Acknowledgements
The authors are grateful to Professor ZHANG Xu of Rice Research Institute, Guangdong Academy of Agricultural Sciences for critical reviews of this manuscript, Professor LI Hong and HE Xiu-Ying and Associate Professors CHEN Jian-You of Rice Research Institute, Guangdong Academy of Agricultural Sciences for providing the seeds of partial rice cultivars.
Funding
This study was supported by the Natural Science Foundation of Guangdong Province, China (2017A030313185, 2018A030313867), Guangdong Key Agricultural Program, China (2020B0202090003), Foundation of Guangdong Province Key Laboratory of Plant Molecular Breeding, Foundation of Guangdong Key laboratory of new technology in rice breeding (2020B1212060047).
Author information
Authors and Affiliations
Contributions
CL and ZZ conceived and designed the research; DC carried out the field experiments; XZ and JG carried out the rice quality analysis; KC, PC and YC analyzed the data; DC and XZ wrote the manuscript; CL and ZZ revised the manuscript. All the authors discussed the results and contributed to the manuscript.
Corresponding authors
Ethics declarations
Conflict of interest
The authors declare no conflict of interest.
Ethics approval
This article does not contain any studies with animals performed by any of the authors.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Zhou, XQ., Chen, DG., Guo, J. et al. Genetic improvement of grain quality traits in indica inbred rice cultivars developed in South China during 1956–2020. Euphytica 218, 8 (2022). https://doi.org/10.1007/s10681-021-02953-2
Received:
Accepted:
Published:
DOI: https://doi.org/10.1007/s10681-021-02953-2