Abstract
Aerosolized microorganisms have become an important factor in assessing air quality. To determine the characteristics of bacterial bioaerosols in air and rainwater, as well as calculate the recovery rate of bacteria after rains in Ho Chi Minh City, our study was performed using the SKC Biostage sampler for airborne bacteria and Plate Count Agar (PCA) medium for bacterial concentration. Subsequently, the study determined the bacterial community composition at the phylum and order levels using the 16S rRNA (16S metabarcoding) method. Before the rain, bacterial concentrations in the air ranged from 263.39 ± 21.00 to 277.39 ± 78.99 CFU/m3, and in rainwater 264.89 ± 51.17 to 285.72 ± 28.00 CFU/m3. Following rains, the bacterial concentrations decreased to their lowest levels within the first 1–2 h and gradually increased thereafter, reaching their peak after 9 h for heavy rain and after 12 h for light and moderate rains. The bacterial bioaerosols recovery rate was determined to be 100% for light and moderate rains and 94.6% for heavy rain. The change in bacterial concentration after rainfall showed a positive correlation with temperature (r = 0.85) and CO2 concentration (r = 0.70) and a negative correlation with relative humidity (r = − 0.79). Bacterial composition analysis revealed that the Actinobacteria, Firmicutes, and Proteobacteria phyla were dominant and characteristic of the humid tropical climate in Vietnam. Notably, Firmicutes were the most prevalent phylum both before and after rains. The increased prevalence of certain bacterial orders, particularly Staphylococcus, could contribute to the spread of pathogens, particularly foodborne pathogens. In addition to rain, relative humidity contributed to reducing bacterial bioaerosols concentration and their recovery rate after the rain.
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References
AccuWeather. (2023). AccuWeather. Retrieved April 15, 2023, from https://www.accuweather.com/
AQI. (2023). Vietnam air quality index (AQI): Real-time air pollution level. Retrieved April 20, 2023, from https://www.aqi.in/dashboard/vietnam
Arancibia, F., Ewig, S., Mensa, J., Gonzalez, J., Niederman, M. S., Torres, A., & Bauer, T. T. (2002). Community-acquired pneumonia due to gram-negative bacteria and Pseudomonas aeruginosa: Incidence, risk, and prognosis. Archives of Internal Medicine, 162(16), 1849–1858.
Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics (oxford, England), 30(15), 2114–2120. https://doi.org/10.1093/bioinformatics/btu170
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., & Caporaso, J. G. (2019). Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature biotechnology, 37(8), 8. https://doi.org/10.1038/s41587-019-0209-9
Bowers, R. M., McCubbin, I. B., Hallar, A. G., & Fierer, N. (2012). Seasonal variability in airborne bacterial communities at a high-elevation site. Atmospheric Environment, 50, 41–49. https://doi.org/10.1016/j.atmosenv.2012.01.005
Bowers, R. M., Clements, N., Emerson, J. B., Wiedinmyer, C., Hannigan, M. P., & Fierer, N. (2013). Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere. Environmental Science & Technology, 47(21), 12097–12106. https://doi.org/10.1021/es402970s
Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., & Holmes, S. P. (2016). DADA2: High-resolution sample inference from Illumina amplicon data. Nature Methods, 13(7), 7. https://doi.org/10.1038/nmeth.3869
CCKP. (2021). Vietnam—Climatology. World Bank Climate Change Knowledge Portal. Retrieved April 20, 2023, from https://climateknowledgeportal.worldbank.org/
Dong, L., Qi, J., Shao, C., Zhong, X., Gao, D., Cao, W., Gao, J., Bai, R., Long, G., & Chu, C. (2016). Concentration and size distribution of total airborne microbes in hazy and foggy weather. Science of the Total Environment, 541, 1011–1018. https://doi.org/10.1016/j.scitotenv.2015.10.001
Du, P., Du, R., Ren, W., Lu, Z., & Fu, P. (2018). Seasonal variation characteristic of inhalable microbial communities in PM2.5 in Beijing city, China. The Science of the Total Environment, 610–611, 308–315. https://doi.org/10.1016/j.scitotenv.2017.07.097
Eromo, T., Tassew, H., Daka, D., & Kibru, G. (2016). Bacteriological quality of street foods and antimicrobial resistance of isolates in Hawassa Ethiopia. Ethiopian Journal of Health Sciences, 26(6), 533–542. https://doi.org/10.4314/ejhs.v26i6.5
Fang, Z., Ouyang, Z., Hu, L., Wang, X., Zheng, H., & Lin, X. (2005). Culturable airborne fungi in outdoor environments in Beijing China. Science of the Total Environment, 350(1–3), 47–58. https://doi.org/10.1016/j.scitotenv.2005.01.032
FAO. (1991). Manual of food quality control. 12. Quality assurance in the food control microbiological laboratory. FAO food and nutrition paper, 14(12), 1–154.
Gandolfi, I., Bertolini, V., Bestetti, G., Ambrosini, R., Innocente, E., Rampazzo, G., Papacchini, M., & Franztti, A. (2015). Spatio-temporal variability of airborne bacterial communities and their correlation with particulate matter chemical composition across two urban areas. Applied Microbiology and Biotechnology, 99, 4867–4877.
Georgakopoulos, D. G., Després, V., Frohlich-Nowoisky, J., Psenner, R., Ariya, P. A., Pósfai, M., Ahern, H. E., Moffett, B. F., & Hill, T. C. J. (2009). Microbiology and atmospheric processes: Biological, physical and chemical characterization of aerosol particles. Biogeosciences, 6(4), 721–737. https://doi.org/10.5194/bg-6-721-2009
Ghosh, M., Wahi, S., Kumar, M., & Ganguli, A. (2007). Prevalence of enterotoxigenic Staphylococcus aureus and Shigella spp. in some raw street vended Indian foods. International Journal of Environmental Health Research, 17(2), 151–156. https://doi.org/10.1080/09603120701219204
Gou, H., Lu, J., Li, S., Tong, Y., Xie, C., & Zheng, X. (2016). Assessment of microbial communities in PM1 and PM10 of Urumqi during winter. Environmental pollution (Barking, Essex: 1987), 214, 202–210. https://doi.org/10.1016/j.envpol.2016.03.073
He, S., Goodkin, N., Jackisch, D., Ong, M. R., & Samanta, D. (2018). Continuous real-time analysis of the isotopic composition of precipitation during tropical rain events: Insights into tropical convection. Hydrological Processes, 32(1), 1531–1545. https://doi.org/10.1002/hyp.11520
Hu, W., Murata, K., Horikawa, Y., Naganuma, A., & Zhang, D. (2017). Bacterial community composition in rainwater associated with synoptic weather in an area downwind of the Asian continent. Science of the Total Environment, 601–602, 1775–1784. https://doi.org/10.1016/j.scitotenv.2017.06.052
Jang, G. I., Hwang, C. Y., & Cho, B. C. (2018). Effects of heavy rainfall on the composition of airborne bacterial communities. Frontiers of Environmental Science & Engineering, 12(2), 12. https://doi.org/10.1007/s11783-018-1008-0
Joung, Y. S., Ge, Z., & Buie, C. R. (2017). Bioaerosol generation by raindrops on soil. Nature Communications, 8(1), 14668. https://doi.org/10.1038/ncomms14668
Kang, S. M., Heo, K. J., & Lee, B. U. (2015). Why does rain increase the concentrations of environmental bioaerosols during monsoon? Aerosol and air quality research, 2320–2324. https://doi.org/10.4209/aaqr.2014.12.0328
Kaushik, R., Balasubramanian, R., & Dunstan, H. (2014). Microbial quality and phylogenetic diversity of fresh rainwater and tropical freshwater reservoir. PLoS ONE, 9(6), e100737.
Kulshrestha, U., Reddy, L., Satyanarayana, J., & Kulshrestha, M. J. (2009). Real-time wet scavenging of major chemical constituents of aerosols and role of rain intensity in Indian region. Atmospheric Environment, 43, 5123–5127.
Li, Y., Fu, H., Wang, W., Liu, J., Meng, Q., & Wang, W. (2015). Characteristics of bacterial and fungal aerosols during the autumn haze days in Xi’an, China. Atmospheric Environment, 122, 439–447. https://doi.org/10.1016/j.atmosenv.2015.09.070
Lonon, M. K. (1998). Bioaerosol sampling (indoor air) Culturable organisms: bacteria, fungi, thermophilic actinomycetes Method 0800. NIOSH Manual of analytical methods (NMAM), 1.
Lory, S. (2014). The family Staphylococcaceae. In E. Rosenberg, E. F. DeLong, S. Lory, E. Stackebrandt, & F. Thompson (Eds.), The prokaryotes: Firmicutes and Tenericutes (pp. 363–366). Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-30120-9_350
Malakootian, M., & Gharghani, M. A. (2016). Investigation of type and density of bio-aerosols in air samples from educational hospital wards of Kerman city, 2014. Environmental Health Engineering and Management Journal, 3(4), 197–202.
Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet Journal, 17(1), 1.
Peter, H., Hörtnagl, P., Reche, I., & Sommaruga, R. (2014). Bacterial diversity and composition during rain events with and without Saharan dust influence reaching a high mountain lake in the Alps. Environmental Microbiology Reports, 6, 618–624.
Polymenakou, P. N. (2012). Atmosphere: A source of pathogenic or beneficial microbes? Atmosphere, 3(1), 87–102. https://doi.org/10.3390/atmos3010087
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner, F. O. (2013). The SILVA ribosomal RNA gene database project: Improved data processing and web-based tools. Nucleic acids research, 41, D590–D596. https://doi.org/10.1093/nar/gks1219
Seinfeld, J. H., & Pandis, S. N. (2006). Atmospheric chemistry and physics: From air pollution to climate change. Chapter 20: Wet deposition (2nd ed.). A Wiley-Interscience Publication.
Sharma, M., & Hudson, J. B. (2008). Ozone gas is an effective and practical antibacterial agent. American Journal of Infection Control, 36(8), 559–563. https://doi.org/10.1016/j.ajic.2007.10.021
Smets, W., Moretti, S., Denys, S., & Lebeer, S. (2016). Airborne bacteria in the atmosphere: Presence, purpose, and potential. Atmospheric Environment, 139, 214–221. https://doi.org/10.1016/j.atmosenv.2016.05.038
Stetzenbach, L. D. (2009). Airborne infectious microorganisms. Encyclopedia of microbiology, 175–182. https://doi.org/10.1016/B978-012373944-5.00177-2
Tang, J. W. (2009). The effect of environmental parameters on the survival of airborne infectious agents. Journal of the Royal Society Interface, 6(Suppl 6), 737–746. https://doi.org/10.1098/rsif.2009.0227.focus
Tong, Y. Y., & Lighthart, B. (1997). Solar radiation has a lethal effect on natural populations of culturable outdoor atmospheric bacteria. Atmospheric Environment, 31, 897–900.
Vos, P., Garrity, G. M., Jones D., Krieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K-H., & Whitman, W. B. (Eds.). (2009). Bergey’s manual of systematic bacteriology—The Firmicutes (2nd ed., Vol. 3). Pub by Springer. Retrieved December 3, 2023, from https://www.springer.com/series/4157
Wang, W., Ma, Y., Ma, X., Wu, F., Ma, X., An, L., & Feng, H. (2010). Seasonal variations of airborne bacteria in the Mogao Grottoes, Dunhuang. China. International Biodeterioration & Biodegradation, 64(4), 309–315. https://doi.org/10.1016/j.ibiod.2010.03.004
WHO. (2023). Air pollution in Viet Nam. World Health Organization. Retrieved April 20, 2023, from https://www.who.int/vietnam/health-topics/airpollution
Wiśniewska, K. A., Śliwińska-Wilczewska, S., & Lewandowska, A. U. (2022). Airborne microalgal and cyanobacterial diversity and composition during rain events in the southern Baltic Sea region. Scientific Reports, 12(1), 2029. https://doi.org/10.1038/s41598-022-06107-9
World Meteorological Organization. (2018). Guide to instruments and methods of observation (p. 548). World Meteorological Organization: Geneva, Switzerland.
Xiong, J., Liu, Y., Lin, X., Zhang, H., Zeng, J., Hou, J., Yang, Y., Yao, T., Knight, R., & Chu, H. (2012). Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau. Environmental Microbiology, 14(9), 2457–2466. https://doi.org/10.1111/j.1462-2920.2012.02799.x
Xu, C., Wei, M., Chen, J., Zhu, C., Li, J., Xu, X., Wang, W., Zhang, Q., Ding, A., Kan, H., Zhao, Z., & Mellouki, A. (2019). Profile of inhalable bacteria in PM2.5 at Mt. Tai, China: Abundance, community, and influence of air mass trajectories. Ecotoxicology and Environmental Safety, 168, 110–119. https://doi.org/10.1016/j.ecoenv.2018.10.071
Zeigler, D. R. (2013). The Family Paenibacillaceae (p. 24). The Bacillus Genetic Stock Center.
Zhen, Q., Deng, Y., Wang, Y., Wang, X., Zhang, H., Sun, X., & Ouyang, Z. (2017). Meteorological factors had more impact on airborne bacterial communities than air pollutants. Science of the Total Environment, 601–602, 703–712. https://doi.org/10.1016/j.scitotenv.2017.05.049
Acknowledgements
The authors thank the University of Science, Vietnam National University Ho Chi Minh City. We gratefully thank the members of the Air and Water Pollution—Public Health—Climate Change research group of the Faculty of Environment, VNUHCM-University of Science for the sampling instruments. We gratefully thank Prof. Sheng-Hsiang (Carlo) Wang from National Central University, Taiwan for supporting us with the Aerobox device.
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This research is funded by the University of Science, VNU-HCM under grant number T2022-69.
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Dang Diep Yen Nga and Vuong Hong Nhung designed and performed experiments, collected data, conducted data analysis, and wrote the manuscript. Nguyen Tri Nhan edited the manuscript. To Thi Hien helped in the preparation of the first draft of the manuscript.
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Nga, D.D.Y., Nhung, V.H., Nhan, N.T. et al. Study on the concentration, composition, and recovery rate of bacterial bioaerosols after rainfall in Ho Chi Minh City. Environ Monit Assess 196, 295 (2024). https://doi.org/10.1007/s10661-024-12442-3
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DOI: https://doi.org/10.1007/s10661-024-12442-3