Skip to main content

Advertisement

Log in

Identification of a perchloric acid-soluble protein (PSP)-like ribonuclease from Trichomonas vaginalis

  • Original Paper
  • Published:
Parasitology Research Aims and scope Submit manuscript

Abstract

A perchloric acid-soluble protein (PSP), named here tv-psp1, was identified in Trichomonas vaginalis. It is expressed under normal culture conditions according to expressed sequence tag (EST) analysis. On the other hand, Tv-PSP1 protein was identified by mass spectrometry with a 40% of identity to human PSP (p14.1). Polyclonal antibodies against recombinant Tv-PSP1 (rTv-PSP1) recognized a single band at 13.5 kDa in total protein parasite extract by SDS-PAGE and a high molecular weight band analyzed by native PAGE. Structural analysis of Tv-PSP1, using dynamic light scattering, size exclusion chromatography, and circular dichroism spectroscopy, showed a trimeric structure stable at 7 M urea with 38% α-helix and 14% β-sheet in solution and a molecular weight of 40.5 kD. Tv-PSP1 models were used to perform dynamic simulations over 100 ns suggesting a stable homotrimeric structure. Tv-PSP1 was located in the nucleus, cytoplasm, and hydrogenosomes of T. vaginalis, and the in silico analysis by Search Tool for the Retrieval of Interacting Genes/Proteins (STRING) showed interactions with RNA binding proteins. The preliminary results of RNA degradation analysis with the recombinant Tv-PSP1 showed RNA partial deterioration suggesting a possible putative ribonuclease function.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig.1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Alvarez-Sanchez ME, Avila-Gonzalez L, Becerril-Garcia C, Fattel-Facenda LV, Ortega-Lopez J, Arroyo R (2000) A novel cysteine proteinase (CP65) of Trichomonas vaginalis involved in cytotoxicity. Microb Pathog 28:193–202. https://doi.org/10.1006/mpat.1999.0336

    Article  CAS  PubMed  Google Scholar 

  • Antonenkov VD, Ohlmeier S, Sormunen RT, Hiltunen JK (2007) UK114, a YjgF/Yer057p/UK114 family protein highly conserved from bacteria to mammals, is localized in rat liver peroxisomes. Biochem Biophys Res Commun 357:252–257. https://doi.org/10.1016/j.bbrc.2007.03.136

    Article  CAS  PubMed  Google Scholar 

  • Aurrecoechea C, Brestelli J, Brunk BP, Carlton JM, Dommer J, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Miller JA, Morrison HG, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Stoeckert CJ, Sullivan S, Treatman C, Wang H (2009) GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis. Nucleic Acids Res 37:D526–D530. https://doi.org/10.1093/nar/gkn631

    Article  CAS  PubMed  Google Scholar 

  • Bartorelli A, Bussolati B, Millesimo M, Gugliotta P, Bussolati G (1996) Antibody-dependent cytotoxic activity on human cancer cells expressing UK 114 tumor membrane antigen. Int J Oncol 8:543–548

    CAS  PubMed  Google Scholar 

  • Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The Protein Data Bank. Nucleic Acids Res 28:235–242. https://doi.org/10.1093/nar/28.1.235

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M (1983) CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J Comput Chem 4:187–217. https://doi.org/10.1002/jcc.540040211

    Article  CAS  Google Scholar 

  • Burman JD, Stevenson CE, Sawers RG, Lawson DM (2007) The crystal structure of Escherichia coli TdcF, a member of the highly conserved YjgF/YER057c/UK114 family. BMC Struct Biol 7:1

    Article  Google Scholar 

  • Bussolati G, Geuna M, Bussolati B, Millesimo M, Botta M, Bartorelli A (1997) Cytolytic and tumor inhibitory antibodies against UK114 protein in the sera of cancer patients. Int J Oncol 10:779–785

    CAS  PubMed  Google Scholar 

  • Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UCM, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Muller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ (2007) Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 315:207–212

    Article  Google Scholar 

  • Carvajal-Gamez B, Arroyo R, Lira R, López-Camarillo C, Alvarez-Sánchez M (2010) Identification of two novel Trichomonas vaginaliseif-5a genes. Infect Genet Evol 10:284–291

    Article  CAS  Google Scholar 

  • Ceciliani F, Faotto L, Negri A, Colombo I, Berra B, Bartorelli A, Ronchi S (1996) The primary structure of UK 114 tumor antigen. FEBS Lett 393:147–150. https://doi.org/10.1016/0014-5793(96)00850-2

    Article  CAS  PubMed  Google Scholar 

  • Cui J, Das S, Smith TF, Samuelson J (2010) Trichomonas transmembrane cyclases result from massive gene duplication and concomitant development of pseudogenes. PLoS Negl Trop Dis 4:e782

    Article  Google Scholar 

  • Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK (2002) X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1). Proteins: Struct, Funct, Bioinf 48:431–436. https://doi.org/10.1002/prot.10151

    Article  CAS  Google Scholar 

  • Dhawan LLB, Pytlak A, Kulshrestha S, Blaxall BC, Taubman MB (2012) Y-box binding protein 1 and RNase UK114 mediate monocyte chemoattractant protein 1 mRNA stability in vascular smooth muscle cells. Mol Cell Biol 32:3768–3775. https://doi.org/10.1128/MCB.00846-12

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • El-Shazly AM, El-Naggar HM, Soliman M, El-Negeri M, El-Nemr HE, Handousa AE, Morsy TA (2001) A study on Trichomoniasis vaginalis and female infertility. J Egypt Soc Parasitol 31:545–553

    CAS  PubMed  Google Scholar 

  • Enos-Berlage JL, Langendorf MJ, Downs DM (1998) Complex metabolic phenotypes caused by a mutation in yjgF, encoding a member of the highly conserved YER057c/YjgF family of proteins. J Bacteriol 180:6519–6528

    CAS  PubMed  PubMed Central  Google Scholar 

  • Farkas A, Nardai G, Csermely P, Tompa P, Friedrich P (2004) DUK114, the Drosophila ortologue of bovine brain calpain activator protein, is a molecular chaperone. Biochem J 383:165–170

    Article  CAS  Google Scholar 

  • da Fonseca Pires S, Fialho LC Jr, Silva SO, Melo MN, de Souza CC, Tafuri WL, Bruna Romero O, de Andrade HM (2014) Identification of virulence factors in Leishmania infantum strains by a proteomic approach. J Proteome Res 13:1860–1872. https://doi.org/10.1021/pr400923g

    Article  CAS  PubMed  Google Scholar 

  • Ghezzo F, Berta GN, Bussolati B, Bosio A, Corvetti G, di Carlo F, Bussolati G, Guglielmone R, Bartorelli A (1999) Perchloric acid-soluble proteins from goat liver inhibit chemical carcinogenesis of Syrian hamster cheek-pouch carcinoma. Br J Cancer 79:54–58. https://doi.org/10.1038/sj.bjc.6690011

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Goping G, Kuijpers G, Vinet R, Pollard HB (1996) Comparison of LR White and Unicryl as embedding media for light and electron immunomicroscopy of chromaffin cells. J Histochem Cytochem 44:289–295

    Article  CAS  Google Scholar 

  • Greenfield NJ (2006) Using circular dichroism spectra to estimate protein secondary structure. Nat Protoc 1:2876–2890. https://doi.org/10.1038/nprot.2006.202

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Horváthová L, Šafaříková L, Basler M, Hrdý I, Campo NB, Shin JW, Huang KY, Huang PJ, Lin R, Tang P, Tachezy J (2012) Transcriptomic identification of iron-regulated and iron-independent gene copies within the heavily duplicated Trichomonas vaginalis genome. Genome Biol Evol 4:1017–1029

    Article  Google Scholar 

  • Huang J, MacKerell AD (2013) CHARMM36 all-atom additive protein force field: validation based on comparison to NMR data. J Comput Chem 34:2135–2145. https://doi.org/10.1002/jcc.23354

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jo S, Kim T, Iyer VG, Im W (2008) CHARMM-GUI: a web-based graphical user interface for CHARMM. J Comput Chem 29:1859–1865. https://doi.org/10.1002/jcc.20945

    Article  CAS  PubMed  Google Scholar 

  • Kanouchi H, Oka T, Asagi K, Tachibana H, Yamada* K (2000) Expression and cellular distribution of perchloric acid-soluble protein is dependent on the cell-proliferating states of NRK-52E cells. Cell Mol Life Sci 57:1103–1108. https://doi.org/10.1007/pl00000746

    Article  CAS  PubMed  Google Scholar 

  • Kanouchi H, Matsumoto M, Taga M, Yamada K, Oka T, Toné S, Minatogawa Y (2005) Nuclear transfer of perchloric acid-soluble protein by endoplasmic reticulum stressors. Protein Sci 14:2344–2349. https://doi.org/10.1110/ps.051481105

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kim J-M, Yoshikawa H, Shirahige K (2001) A member of the YER057c/yjgf/Uk114 family links isoleucine biosynthesis and intact mitochondria maintenance in Saccharomyces cerevisiae. Genes Cells 6:507–517. https://doi.org/10.1046/j.1365-2443.2001.00443.x

    Article  CAS  PubMed  Google Scholar 

  • López-Rosas I, Marchat LA, Olvera BG, Guillen N, Weber C, Hernández de la Cruz O, Ruíz-García E, Astudillo-de la Vega H, López-Camarillo C (2014) Proteomic analysis identifies endoribonuclease EhL-PSP and EhRRP41 exosome protein as novel interactors of EhCAF1 deadenylase. J Proteome 111:59–73. https://doi.org/10.1016/j.jprot.2014.06.019

    Article  CAS  Google Scholar 

  • Manavalan P, Johnson WC Jr (1983) Sensitivity of circular dichroism to protein tertiary structure class. Nature 305:831–832. https://doi.org/10.1038/305831a0

    Article  CAS  Google Scholar 

  • Manjasetty BA et al (2004) Crystal structure of Homo sapiens protein hp14.5. Proteins: Struct, Funct, Bioinf 54:797–800

    Article  CAS  Google Scholar 

  • Mason PR, Gwanzura L (1990) Reduced lymphocyte responses to mitogens in natural and experimental trichomoniasis. Infect Immun 58:3553–3557

    CAS  PubMed  PubMed Central  Google Scholar 

  • Melloni E, Michetti M, Salamino F, Pontremoli S (1998) Molecular and functional properties of a Calpain activator protein specific for μ-isoforms. J Biol Chem 273:12827–12831. https://doi.org/10.1074/jbc.273.21.12827

    Article  CAS  PubMed  Google Scholar 

  • Mistiniene E, Luksa V, Sereikaite J, Naktinis V (2003) Oligomeric assembly and ligand binding of the members of protein family YER057c/YIL051c/YJGF. Bioconjug Chem 14:1243–1252

    Article  CAS  Google Scholar 

  • Miyakawa T, Lee WC, Hataco K, Kato Y, Sawano Y, Miyazono KN, Tonakura M (2006) Crystal structure of the YjgF/YER057c/Uk114 family protein from the hyperthermophilic archaeon Sulfolobus tokodaii strain. Proteins: Struct, Funct, Bioinf 62:557–561

    Article  CAS  Google Scholar 

  • Morishita R, Kawagoshi A, Sawasaki T, Madin K, Ogasawara T, Oka T, Endo Y (1999) Ribonuclease activity of rat liver Perchloric acid-soluble protein, a potent inhibitor of protein synthesis. J Biol Chem 274:20688–20692. https://doi.org/10.1074/jbc.274.29.20688

    Article  CAS  PubMed  Google Scholar 

  • Oka T et al (1995) Isolation and characterization of a novel perchloric acid-soluble protein inhibiting cell-free protein synthesis. J Biochem Chem 270:30060–30067

    CAS  Google Scholar 

  • Oka T, Nishimoto Y, Sasagawa T, Kanouchi H, Kawasaki Y, Natori Y (1999) Production of functional rat liver PSP protein in Escherichia coli. Cell Mol Life Sci 55:131–134

    Article  CAS  Google Scholar 

  • Oxelmark E, Marchini A, Malanchi I, Magherini F, Jaquet L, Hajibagheri MAN, Blight KJ, Jauniaux JC, Tommasino M (2000) Mmf1p, a novel yeast mitochondrial protein conserved throughout evolution and involved in maintenance of the mitochondrial genome. Mol Cell Biol 20:7784–7797

    Article  CAS  Google Scholar 

  • Oyhenart J, Breccia JD (2014) Evidence for repeated gene duplications in Tritrichomonas foetus supported by EST analysis and comparison with the Trichomonas vaginalis genome. Vet Parasitol 206:267–276

    Article  CAS  Google Scholar 

  • Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE (2004) UCSF chimera—a visualization system for exploratory research and analysis. J Comput Chem 25:1605–1612. https://doi.org/10.1002/jcc.20084

    Article  CAS  PubMed  Google Scholar 

  • Pu Y-G, Jiang YL, Ye XD, Ma XX, Guo PC, Lian FM, Teng YB, Chen Y, Zhou CZ (2011) Crystal structures and putative interface of Saccharomyces cerevisiae mitochondrial matrix proteins Mmf1 and Mam33. J Struct Biol 175:469–474

    Article  CAS  Google Scholar 

  • Quintas-Granados LI, Villalpando JL, Vázquez-Carrillo LI, Arroyo R, Mendoza-Hernández G, Álvarez-Sánchez ME (2013) TvMP50 is an immunogenic metalloproteinase during male trichomoniasis. Mol Cell Proteomics 12:1953–1964

    Article  Google Scholar 

  • Roy AKA, Zhang Y (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 5:725–738. https://doi.org/10.1038/nprot.2010.5.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sasagawa T, Oka T, Tokumura A, Nishimoto Y, Muñoz S, Kuwahata M, Okita M, Tsuji H, Natori Y (1999) Analysis of the fatty acid components in a perchloric acid-soluble protein. Biochim Biophys Acta 1437:317–324

    Article  CAS  Google Scholar 

  • Servant FBC, Carrère S, Courcelle E, Gouzy J, Peyruc D, Kahn D (2002) ProDom: automated clustering of homologous domains. Brief Bioinform 3:246–251

    Article  CAS  Google Scholar 

  • Shevchenko A, Wilm M, Vorm O, Mann M (1996) Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels. Anal Chem 68:850–858

    Article  CAS  Google Scholar 

  • Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Soding J, Thompson JD, Higgins DG (2011) Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7:539. https://doi.org/10.1038/msb.2011.75

    Article  PubMed  PubMed Central  Google Scholar 

  • Sinha S, Rappu P, Lange S, Mäntsälä P, Zalkin H, Smith JL (1999) Crystal structure of Bacillus subtilis YabJ, a purine regulatory protein and member of the highly conserved YjgF family. Proc Natl Acad Sci 96:13074–13079

    Article  CAS  Google Scholar 

  • Su P, Feng T, Zhou X, Zhang S, Zhang Y, Cheng J’, Luo Y, Peng J, Zhang Z, Lu X, Zhang D, Liu Y (2015) Isolation of Rhp-PSP, a member of YER057c/YjgF/UK114 protein family with antiviral properties, from the photosynthetic bacterium Rhodopseudomonas palustris strain JSC-3b. Sci Rep 5:16121. https://doi.org/10.1038/srep16121

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Thakur KG, Praveena T, Gopal B (2010) Mycobacterium tuberculosis Rv2704 is a member of the YjgF/YER057c/UK114 family. Proteins: Struct, Funct, Bioinf 78:773–778. https://doi.org/10.1002/prot.22623

    Article  CAS  Google Scholar 

  • Volz K (1999) A test case for structure-based functional assignment: the 1.2 Å crystal structure of the yjgF gene product from Escherichia coli. Protein Sci 8:2428–2437. https://doi.org/10.1110/ps.8.11.2428

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • WHO (2012) Global prevalence and incidence of selected curable sexually transmitted infections overview and estimates. Geneva

  • Yang J, Yan R, Roy A, Xu D, Poisson J, Zhang Y (2015) The I-TASSER suite: protein structure and function prediction. Nat Methods 12:7–8. https://doi.org/10.1038/nmeth.3213 http://www.nature.com/nmeth/journal/v12/n1/abs/nmeth.3213.html#supplementary-information

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9:40

    Article  Google Scholar 

Download references

Acknowledgements

We acknowledge Biol. Anel Edith Lagunes Guillén, M.Sc. Laura Isabel Vazquez Carrillo, QFB Leticia Avila-González, and Brenda Herrera Villalobos for their technical assistance.

Funding

This work was supported by UACM and a grant from CONACyT (83808) Mexico (to M.E.A.S.). AVO was supported by a scholarship from ICyTDF (ICyTDF/SRI/70/2011).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to María Elizbeth Alvarez-Sanchez.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Additional information

Handling Editor: Julia Walochnik

Electronic supplementary material

ESM 1

(DOC 312 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Villalobos-Osnaya, A., Garza-Ramos, G., Serratos, I.N. et al. Identification of a perchloric acid-soluble protein (PSP)-like ribonuclease from Trichomonas vaginalis. Parasitol Res 117, 3639–3652 (2018). https://doi.org/10.1007/s00436-018-6065-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00436-018-6065-6

Keywords

Navigation